MGE detailed information
MGE type: Prophage MGE length: 38814 bp
Accession: NZ_CP084209 Location: 3517085..3555898 Organism: Escherichia coli strain EC2648-R2 Replicon: chromosome
Accession: NZ_CP084209 Location: 3517085..3555898 Organism: Escherichia coli strain EC2648-R2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB16_RS17115 (3512928) | 3512928..3516002 | + | 3075 | WP_000177906.1 | beta-galactosidase | - |
| LDB16_RS17120 (3516054) | 3516054..3517028 | + | 975 | Protein_3365 | lactose permease | - |
| LDB16_RS17125 (3517085) | 3517085..3517782 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| LDB16_RS17130 (3517791) | 3517791..3517883 | + | 93 | Protein_3367 | sigma factor-binding protein Crl | - |
| LDB16_RS17135 (3517922) | 3517922..3518977 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| LDB16_RS17140 (3519265) | 3519265..3520368 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LDB16_RS17145 (3520380) | 3520380..3521633 | + | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LDB16_RS17155 (3522205) | 3522205..3522546 | - | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| LDB16_RS17160 (3522567) | 3522567..3522884 | - | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| LDB16_RS17165 (3522903) | 3522903..3523124 | - | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| LDB16_RS17170 (3523133) | 3523133..3523609 | - | 477 | WP_000811693.1 | RadC family protein | - |
| LDB16_RS17175 (3523625) | 3523625..3524083 | - | 459 | WP_000211838.1 | antirestriction protein | - |
| LDB16_RS17180 (3524181) | 3524181..3524420 | - | 240 | WP_000194654.1 | DUF905 family protein | - |
| LDB16_RS17185 (3524497) | 3524497..3524964 | - | 468 | WP_001547765.1 | protein YkfB | - |
| LDB16_RS17190 (3524987) | 3524987..3525430 | - | 444 | WP_000824223.1 | lipoprotein YafY | - |
| LDB16_RS17195 (3525430) | 3525430..3525657 | - | 228 | WP_001548158.1 | protein YpjK | - |
| LDB16_RS17200 (3525653) | 3525653..3525844 | - | 192 | Protein_3380 | DeoR family transcriptional regulator | - |
| LDB16_RS17205 (3526061) | 3526061..3526882 | - | 822 | WP_000197389.1 | DUF932 domain-containing protein | - |
| LDB16_RS17210 (3526974) | 3526974..3527837 | - | 864 | WP_001065553.1 | GTPase family protein | - |
| LDB16_RS17215 (3528166) | 3528166..3529059 | - | 894 | WP_000770246.1 | LysR substrate-binding domain-containing protein | - |
| LDB16_RS17220 (3529155) | 3529155..3529412 | + | 258 | Protein_3384 | IS3 family transposase ISEc52 | Transposase |
| LDB16_RS17225 (3529480) | 3529480..3530631 | + | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| LDB16_RS17230 (3530641) | 3530641..3531066 | + | 426 | Protein_3386 | IS3 family transposase | - |
| LDB16_RS17235 (3531739) | 3531739..3532830 | + | 1092 | Protein_3387 | reverse transcriptase domain-containing protein | - |
| LDB16_RS17240 (3532978) | 3532978..3533958 | - | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| LDB16_RS17245 (3534202) | 3534202..3535605 | + | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| LDB16_RS17250 (3535592) | 3535592..3536524 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| LDB16_RS17255 (3536633) | 3536633..3537679 | - | 1047 | WP_000192349.1 | hypothetical protein | VF |
| LDB16_RS17260 (3537691) | 3537691..3538038 | - | 348 | Protein_3392 | ABC transporter permease subunit | - |
| LDB16_RS17270 (3538808) | 3538808..3538981 | + | 174 | Protein_3394 | IS30 family transposase | - |
| LDB16_RS17275 (3538991) | 3538991..3539239 | - | 249 | Protein_3395 | IS3 family transposase ISEhe3 | Transposase |
| LDB16_RS17280 (3539262) | 3539262..3539612 | - | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| LDB16_RS17285 (3539626) | 3539626..3539691 | - | 66 | Protein_3397 | hypothetical protein | - |
| LDB16_RS17290 (3539706) | 3539706..3540860 | - | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| LDB16_RS17295 (3541155) | 3541155..3542063 | + | 909 | WP_072647389.1 | 2-keto-3-deoxygluconate aldolase | - |
| LDB16_RS17300 (3542078) | 3542078..3544045 | + | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| LDB16_RS17305 (3544272) | 3544272..3545654 | + | 1383 | WP_000192863.1 | MFS transporter | - |
| LDB16_RS17310 (3545666) | 3545666..3547276 | + | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| LDB16_RS17315 (3547281) | 3547281..3548039 | - | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| LDB16_RS17320 (3548178) | 3548178..3549182 | - | 1005 | WP_001281825.1 | hypothetical protein | VF |
| LDB16_RS17325 (3549152) | 3549152..3549247 | - | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| LDB16_RS17330 (3549306) | 3549306..3549509 | + | 204 | Protein_3406 | DUF3987 domain-containing protein | - |
| LDB16_RS17340 (3550377) | 3550377..3551108 | + | 732 | WP_000388269.1 | protein YagJ | - |
| LDB16_RS17345 (3551199) | 3551199..3551825 | - | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| LDB16_RS17350 (3552097) | 3552097..3552795 | - | 699 | WP_001214248.1 | recombinase family protein | - |
| LDB16_RS17355 (3552822) | 3552822..3553676 | - | 855 | WP_000072039.1 | protein YagM | - |
| LDB16_RS17360 (3553795) | 3553795..3554019 | - | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| LDB16_RS17365 (3554016) | 3554016..3554456 | - | 441 | WP_000224818.1 | protein YagN | - |
| LDB16_RS17370 (3554573) | 3554573..3555973 | - | 1401 | WP_001407714.1 | hypothetical protein ; Integrase | Integrase |
| LDB16_RS17375 (3556258) | 3556258..3556596 | - | 339 | Protein_3415 | LysR substrate-binding domain-containing protein | - |
| LDB16_RS17380 (3556647) | 3556647..3557603 | - | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LDB16_RS17385 (3557613) | 3557613..3559811 | - | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LDB16_RS17390 (3559808) | 3559808..3560764 | - | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|