MGE detailed information
MGE type: Prophage MGE length: 38814 bp
Accession: NZ_CP084207 Location: 4326212..4365025 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Accession: NZ_CP084207 Location: 4326212..4365025 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB15_RS20930 (4322055) | 4322055..4325129 | + | 3075 | WP_000177906.1 | beta-galactosidase | - |
| LDB15_RS20935 (4325181) | 4325181..4326155 | + | 975 | Protein_4098 | lactose permease | - |
| LDB15_RS20940 (4326212) | 4326212..4326909 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| LDB15_RS20945 (4326918) | 4326918..4327010 | + | 93 | Protein_4100 | sigma factor-binding protein Crl | - |
| LDB15_RS20950 (4327049) | 4327049..4328104 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| LDB15_RS20955 (4328392) | 4328392..4329495 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LDB15_RS20960 (4329507) | 4329507..4330760 | + | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LDB15_RS20970 (4331332) | 4331332..4331673 | - | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| LDB15_RS20975 (4331694) | 4331694..4332011 | - | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| LDB15_RS20980 (4332030) | 4332030..4332251 | - | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| LDB15_RS20985 (4332260) | 4332260..4332736 | - | 477 | WP_000811693.1 | RadC family protein | - |
| LDB15_RS20990 (4332752) | 4332752..4333210 | - | 459 | WP_000211838.1 | antirestriction protein | - |
| LDB15_RS20995 (4333308) | 4333308..4333547 | - | 240 | WP_000194654.1 | DUF905 family protein | - |
| LDB15_RS21000 (4333624) | 4333624..4334091 | - | 468 | WP_001547765.1 | protein YkfB | - |
| LDB15_RS21005 (4334114) | 4334114..4334557 | - | 444 | WP_000824223.1 | lipoprotein YafY | - |
| LDB15_RS21010 (4334557) | 4334557..4334784 | - | 228 | WP_001548158.1 | protein YpjK | - |
| LDB15_RS21015 (4334780) | 4334780..4334971 | - | 192 | Protein_4113 | DeoR family transcriptional regulator | - |
| LDB15_RS21020 (4335188) | 4335188..4336009 | - | 822 | WP_000197389.1 | DUF932 domain-containing protein | - |
| LDB15_RS21025 (4336101) | 4336101..4336964 | - | 864 | WP_001065553.1 | GTPase family protein | - |
| LDB15_RS21030 (4337293) | 4337293..4338186 | - | 894 | WP_000770246.1 | LysR substrate-binding domain-containing protein | - |
| LDB15_RS21035 (4338282) | 4338282..4338539 | + | 258 | Protein_4117 | IS3 family transposase ISEc52 | Transposase |
| LDB15_RS21040 (4338607) | 4338607..4339758 | + | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| LDB15_RS21045 (4339768) | 4339768..4340193 | + | 426 | Protein_4119 | IS3 family transposase | - |
| LDB15_RS21050 (4340866) | 4340866..4341957 | + | 1092 | Protein_4120 | reverse transcriptase domain-containing protein | - |
| LDB15_RS21055 (4342105) | 4342105..4343085 | - | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| LDB15_RS21060 (4343329) | 4343329..4344732 | + | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| LDB15_RS21065 (4344719) | 4344719..4345651 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| LDB15_RS21070 (4345760) | 4345760..4346806 | - | 1047 | WP_000192349.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| LDB15_RS21075 (4346818) | 4346818..4347165 | - | 348 | Protein_4125 | ABC transporter permease subunit | - |
| LDB15_RS21085 (4347935) | 4347935..4348108 | + | 174 | Protein_4127 | IS30 family transposase | - |
| LDB15_RS21090 (4348118) | 4348118..4348366 | - | 249 | Protein_4128 | IS3 family transposase ISEhe3 | Transposase |
| LDB15_RS21095 (4348389) | 4348389..4348739 | - | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| LDB15_RS21100 (4348753) | 4348753..4348818 | - | 66 | Protein_4130 | hypothetical protein | - |
| LDB15_RS21105 (4348833) | 4348833..4349987 | - | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| LDB15_RS21110 (4350282) | 4350282..4351190 | + | 909 | WP_072647389.1 | 2-keto-3-deoxygluconate aldolase | - |
| LDB15_RS21115 (4351205) | 4351205..4353172 | + | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| LDB15_RS21120 (4353399) | 4353399..4354781 | + | 1383 | WP_000192863.1 | MFS transporter | - |
| LDB15_RS21125 (4354793) | 4354793..4356403 | + | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| LDB15_RS21130 (4356408) | 4356408..4357166 | - | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| LDB15_RS21135 (4357305) | 4357305..4358309 | - | 1005 | WP_001281825.1 | Ornithine carbamoyltransferase subunit F | VF |
| LDB15_RS21140 (4358279) | 4358279..4358374 | - | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| LDB15_RS21145 (4358433) | 4358433..4358636 | + | 204 | Protein_4139 | DUF3987 domain-containing protein | - |
| LDB15_RS21155 (4359504) | 4359504..4360235 | + | 732 | WP_000388269.1 | protein YagJ | - |
| LDB15_RS21160 (4360326) | 4360326..4360952 | - | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| LDB15_RS21165 (4361224) | 4361224..4361922 | - | 699 | WP_001214248.1 | recombinase family protein | - |
| LDB15_RS21170 (4361949) | 4361949..4362803 | - | 855 | WP_000072039.1 | protein YagM | - |
| LDB15_RS21175 (4362922) | 4362922..4363146 | - | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| LDB15_RS21180 (4363143) | 4363143..4363583 | - | 441 | WP_000224818.1 | protein YagN | - |
| LDB15_RS21185 (4363700) | 4363700..4365100 | - | 1401 | WP_001407714.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB15_RS21190 (4365385) | 4365385..4365723 | - | 339 | Protein_4148 | LysR substrate-binding domain-containing protein | - |
| LDB15_RS21195 (4365774) | 4365774..4366730 | - | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LDB15_RS21200 (4366740) | 4366740..4368938 | - | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LDB15_RS21205 (4368935) | 4368935..4369891 | - | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|