MGE detailed information
MGE type: Prophage MGE length: 38814 bp
Accession: NZ_CP084205 Location: 3516121..3554934 Organism: Escherichia coli strain EC2648-R1 Replicon: chromosome
Accession: NZ_CP084205 Location: 3516121..3554934 Organism: Escherichia coli strain EC2648-R1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB14_RS17105 (3511964) | 3511964..3515038 | + | 3075 | WP_000177906.1 | beta-galactosidase | - |
| LDB14_RS17110 (3515090) | 3515090..3516064 | + | 975 | Protein_3363 | lactose permease | - |
| LDB14_RS17115 (3516121) | 3516121..3516818 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| LDB14_RS17120 (3516827) | 3516827..3516919 | + | 93 | Protein_3365 | sigma factor-binding protein Crl | - |
| LDB14_RS17125 (3516958) | 3516958..3518013 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| LDB14_RS17130 (3518301) | 3518301..3519404 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LDB14_RS17135 (3519416) | 3519416..3520669 | + | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LDB14_RS17145 (3521241) | 3521241..3521582 | - | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| LDB14_RS17150 (3521603) | 3521603..3521920 | - | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| LDB14_RS17155 (3521939) | 3521939..3522160 | - | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| LDB14_RS17160 (3522169) | 3522169..3522645 | - | 477 | WP_000811693.1 | RadC family protein | - |
| LDB14_RS17165 (3522661) | 3522661..3523119 | - | 459 | WP_000211838.1 | antirestriction protein | - |
| LDB14_RS17170 (3523217) | 3523217..3523456 | - | 240 | WP_000194654.1 | DUF905 family protein | - |
| LDB14_RS17175 (3523533) | 3523533..3524000 | - | 468 | WP_001547765.1 | protein YkfB | - |
| LDB14_RS17180 (3524023) | 3524023..3524466 | - | 444 | WP_000824223.1 | lipoprotein YafY | - |
| LDB14_RS17185 (3524466) | 3524466..3524693 | - | 228 | WP_001548158.1 | protein YpjK | - |
| LDB14_RS17190 (3524689) | 3524689..3524880 | - | 192 | Protein_3378 | DeoR family transcriptional regulator | - |
| LDB14_RS17195 (3525097) | 3525097..3525918 | - | 822 | WP_000197389.1 | DUF932 domain-containing protein | - |
| LDB14_RS17200 (3526010) | 3526010..3526873 | - | 864 | WP_001065553.1 | GTPase family protein | - |
| LDB14_RS17205 (3527202) | 3527202..3528095 | - | 894 | WP_000770246.1 | LysR substrate-binding domain-containing protein | - |
| LDB14_RS17210 (3528191) | 3528191..3528448 | + | 258 | Protein_3382 | IS3 family transposase ISEc52 | Transposase |
| LDB14_RS17215 (3528516) | 3528516..3529667 | + | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| LDB14_RS17220 (3529677) | 3529677..3530102 | + | 426 | Protein_3384 | IS3 family transposase | - |
| LDB14_RS17225 (3530775) | 3530775..3531866 | + | 1092 | Protein_3385 | reverse transcriptase domain-containing protein | - |
| LDB14_RS17230 (3532014) | 3532014..3532994 | - | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| LDB14_RS17235 (3533238) | 3533238..3534641 | + | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| LDB14_RS17240 (3534628) | 3534628..3535560 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| LDB14_RS17245 (3535669) | 3535669..3536715 | - | 1047 | WP_000192349.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LDB14_RS17250 (3536727) | 3536727..3537074 | - | 348 | Protein_3390 | ABC transporter permease subunit | - |
| LDB14_RS17260 (3537844) | 3537844..3538017 | + | 174 | Protein_3392 | IS30 family transposase | - |
| LDB14_RS17265 (3538027) | 3538027..3538275 | - | 249 | Protein_3393 | IS3 family transposase ISEhe3 | Transposase |
| LDB14_RS17270 (3538298) | 3538298..3538648 | - | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| LDB14_RS17275 (3538662) | 3538662..3538727 | - | 66 | Protein_3395 | hypothetical protein | - |
| LDB14_RS17280 (3538742) | 3538742..3539896 | - | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| LDB14_RS17285 (3540191) | 3540191..3541099 | + | 909 | WP_072647389.1 | 2-keto-3-deoxygluconate aldolase | - |
| LDB14_RS17290 (3541114) | 3541114..3543081 | + | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| LDB14_RS17295 (3543308) | 3543308..3544690 | + | 1383 | WP_000192863.1 | MFS transporter | - |
| LDB14_RS17300 (3544702) | 3544702..3546312 | + | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| LDB14_RS17305 (3546317) | 3546317..3547075 | - | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| LDB14_RS17310 (3547214) | 3547214..3548218 | - | 1005 | WP_001281825.1 | Ornithine carbamoyltransferase, catabolic | VF |
| LDB14_RS17315 (3548188) | 3548188..3548283 | - | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| LDB14_RS17320 (3548342) | 3548342..3548545 | + | 204 | Protein_3404 | DUF3987 domain-containing protein | - |
| LDB14_RS17330 (3549413) | 3549413..3550144 | + | 732 | WP_000388269.1 | protein YagJ | - |
| LDB14_RS17335 (3550235) | 3550235..3550861 | - | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| LDB14_RS17340 (3551133) | 3551133..3551831 | - | 699 | WP_001214248.1 | recombinase family protein | - |
| LDB14_RS17345 (3551858) | 3551858..3552712 | - | 855 | WP_000072039.1 | protein YagM | - |
| LDB14_RS17350 (3552831) | 3552831..3553055 | - | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| LDB14_RS17355 (3553052) | 3553052..3553492 | - | 441 | WP_000224818.1 | protein YagN | - |
| LDB14_RS17360 (3553609) | 3553609..3555009 | - | 1401 | WP_001407714.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LDB14_RS17365 (3555294) | 3555294..3555632 | - | 339 | Protein_3413 | LysR substrate-binding domain-containing protein | - |
| LDB14_RS17370 (3555683) | 3555683..3556639 | - | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LDB14_RS17375 (3556649) | 3556649..3558847 | - | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LDB14_RS17380 (3558844) | 3558844..3559800 | - | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|