MGE detailed information
MGE type: Mobilizable plasmid MGE length: 171886 bp
Accession: NZ_CP084199 Location: 1..171886 Organism: Pantoea agglomerans strain CB1 Replicon: plasmid pCB1B
Accession: NZ_CP084199 Location: 1..171886 Organism: Pantoea agglomerans strain CB1 Replicon: plasmid pCB1B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO72_RS22090 (LDO72_22110) | 64..1137 | + | 1074 | WP_031593098.1 | RepB family plasmid replication initiator protein | - |
| LDO72_RS22095 (LDO72_22115) | 2501..3688 | - | 1188 | WP_275103351.1 | diguanylate phosphodiesterase | - |
| LDO72_RS22100 (LDO72_22120) | 3940..4149 | - | 210 | WP_143991481.1 | DUF1471 domain-containing protein | - |
| LDO72_RS22105 (LDO72_22125) | 4351..6135 | - | 1785 | WP_134161885.1 | GGDEF and EAL domain-containing protein | - |
| LDO72_RS22110 (LDO72_22130) | 6655..6879 | - | 225 | WP_010256955.1 | DUF3606 domain-containing protein | - |
| LDO72_RS22115 (LDO72_22135) | 7249..7488 | + | 240 | WP_022624236.1 | hypothetical protein | - |
| LDO72_RS22120 (LDO72_22140) | 7664..8152 | + | 489 | WP_275103352.1 | Hsp20 family protein | - |
| LDO72_RS22125 (LDO72_22145) | 8226..8990 | - | 765 | WP_143991480.1 | MerR family transcriptional regulator | - |
| LDO72_RS22130 (LDO72_22150) | 9186..9395 | - | 210 | WP_010256969.1 | CsbD family protein | - |
| LDO72_RS22135 (LDO72_22155) | 9555..10784 | - | 1230 | WP_275103353.1 | diguanylate phosphodiesterase | - |
| LDO72_RS22140 (LDO72_22160) | 11741..11974 | + | 234 | WP_060678836.1 | hypothetical protein | - |
| LDO72_RS22145 (LDO72_22165) | 12050..12379 | - | 330 | WP_031593089.1 | hypothetical protein | - |
| LDO72_RS22150 (LDO72_22170) | 13018..14676 | + | 1659 | WP_187492319.1 | Methyl-accepting chemotaxis protein I | VF |
| LDO72_RS22155 (LDO72_22175) | 15277..17202 | + | 1926 | WP_275103354.1 | Methyl-accepting chemotaxis protein I | VF |
| LDO72_RS22160 (LDO72_22180) | 17258..18058 | - | 801 | WP_109653783.1 | MBL fold metallo-hydrolase | - |
| LDO72_RS22165 (LDO72_22185) | 18136..19251 | - | 1116 | WP_275103355.1 | metallophosphoesterase | - |
| LDO72_RS22170 (LDO72_22190) | 19489..21816 | - | 2328 | WP_109653778.1 | FdhF/YdeP family oxidoreductase | - |
| LDO72_RS22175 (LDO72_22195) | 22171..22614 | + | 444 | WP_275103380.1 | cyclophilin-like fold protein | - |
| LDO72_RS22180 (LDO72_22200) | 22788..23135 | - | 348 | WP_003850685.1 | HNH nuclease YajD | - |
| LDO72_RS22185 (LDO72_22205) | 23470..23637 | - | 168 | WP_009093121.1 | hypothetical protein | - |
| LDO72_RS22190 (LDO72_22210) | 23925..27029 | + | 3105 | WP_275103356.1 | Multidrug resistance protein MexB | VF |
| LDO72_RS22195 (LDO72_22215) | 27089..28114 | - | 1026 | WP_275103357.1 | alpha/beta hydrolase | - |
| LDO72_RS22200 (LDO72_22220) | 28183..29376 | - | 1194 | WP_069027135.1 | MFS transporter | - |
| LDO72_RS22205 (LDO72_22225) | 29510..30406 | + | 897 | WP_275103358.1 | HTH-type transcriptional regulator PgrR | VF |
| LDO72_RS22210 (LDO72_22230) | 30470..30646 | - | 177 | WP_074399946.1 | general stress protein | - |
| LDO72_RS22215 (LDO72_22235) | 30848..31144 | + | 297 | WP_064703128.1 | hypothetical protein | - |
| LDO72_RS22220 (LDO72_22240) | 31189..31476 | - | 288 | WP_275103359.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LDO72_RS22225 (LDO72_22245) | 31476..31707 | - | 232 | Protein_27 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LDO72_RS22230 (LDO72_22250) | 32048..34021 | + | 1974 | WP_275103360.1 | Aerotaxis receptor | VF |
| LDO72_RS22235 (LDO72_22255) | 34126..35142 | + | 1017 | WP_039387390.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LDO72_RS22240 (LDO72_22260) | 35192..35860 | - | 669 | WP_275103361.1 | DUF2268 domain-containing putative Zn-dependent protease | - |
| LDO72_RS22245 (LDO72_22265) | 36211..36990 | + | 780 | WP_275103362.1 | MBL fold metallo-hydrolase | - |
| LDO72_RS22250 (LDO72_22270) | 37064..38056 | + | 993 | WP_083070606.1 | HTH-type transcriptional regulator CdhR | VF |
| LDO72_RS22255 (LDO72_22275) | 38148..38549 | - | 402 | WP_109653765.1 | H-NS family nucleoid-associated regulatory protein | - |
| LDO72_RS22260 (LDO72_22280) | 38825..40387 | + | 1563 | WP_182687982.1 | Phytochrome-like protein cph2 | VF |
| LDO72_RS22265 (LDO72_22285) | 40456..40902 | + | 447 | WP_031593775.1 | VOC family protein | - |
| LDO72_RS22270 (LDO72_22290) | 41129..41530 | - | 402 | WP_010257055.1 | H-NS family nucleoid-associated regulatory protein | - |
| LDO72_RS22275 (LDO72_22295) | 42713..42892 | + | 180 | WP_071941192.1 | DUF2256 domain-containing protein | - |
| LDO72_RS22280 (LDO72_22300) | 42945..43247 | - | 303 | WP_275103363.1 | hypothetical protein | - |
| LDO72_RS22285 (LDO72_22305) | 43360..43902 | - | 543 | WP_275103364.1 | YfaZ family outer membrane protein | - |
| LDO72_RS22290 (LDO72_22310) | 43966..44202 | - | 237 | WP_275103365.1 | YgdI/YgdR family lipoprotein | - |
| LDO72_RS22295 (LDO72_22315) | 44576..44995 | + | 420 | WP_275103366.1 | DUF1090 family protein | - |
| LDO72_RS22300 (LDO72_22320) | 45674..46054 | + | 381 | WP_031593781.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| LDO72_RS22305 (LDO72_22325) | 46488..46958 | - | 471 | WP_143991465.1 | WbuC family cupin fold metalloprotein | - |
| LDO72_RS22310 (LDO72_22330) | 47286..47510 | + | 225 | WP_031593784.1 | FeoA domain-containing protein | - |
| LDO72_RS22315 (LDO72_22335) | 47510..49837 | + | 2328 | WP_275103367.1 | Fe(2+) transporter FeoB | VF |
| LDO72_RS22320 (LDO72_22340) | 49962..50957 | - | 996 | WP_275103381.1 | alpha/beta hydrolase | - |
| LDO72_RS22325 (LDO72_22345) | 51533..52219 | + | 687 | WP_275103368.1 | amidohydrolase family protein | - |
| LDO72_RS22330 (LDO72_22350) | 52501..53538 | - | 1038 | WP_109653747.1 | tyrosine-type recombinase/integrase | - |
| LDO72_RS22335 (LDO72_22355) | 54486..54956 | + | 471 | WP_031593793.1 | SgcJ/EcaC family oxidoreductase | - |
| LDO72_RS22340 (LDO72_22360) | 55256..56473 | - | 1218 | WP_275103369.1 | monooxygenase | - |
| LDO72_RS22345 (LDO72_22365) | 56466..57926 | - | 1461 | WP_275103370.1 | MFS transporter | - |
| LDO72_RS22350 (LDO72_22370) | 58286..59695 | - | 1410 | WP_275103371.1 | LLM class flavin-dependent oxidoreductase | - |
| LDO72_RS22355 (LDO72_22375) | 59764..61176 | - | 1413 | WP_275103372.1 | FAD-dependent oxidoreductase | - |
| LDO72_RS22360 (LDO72_22380) | 61196..62368 | - | 1173 | WP_083070619.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| LDO72_RS22365 (LDO72_22385) | 62643..64532 | + | 1890 | WP_109653735.1 | Transcriptional regulatory protein ZraR | VF |
| LDO72_RS22370 (LDO72_22390) | 64628..65578 | + | 951 | WP_275103373.1 | sulfonate ABC transporter substrate-binding protein | - |
| LDO72_RS22375 (LDO72_22395) | 65871..67004 | + | 1134 | WP_235765258.1 | glutathione-independent formaldehyde dehydrogenase | - |
| LDO72_RS22380 (LDO72_22400) | 67293..67544 | + | 252 | WP_039387444.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LDO72_RS22385 (LDO72_22405) | 67541..67828 | + | 288 | WP_010257115.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LDO72_RS22390 (LDO72_22410) | 68192..68506 | + | 315 | WP_143790132.1 | hypothetical protein | - |
| LDO72_RS22395 (LDO72_22415) | 68503..69321 | - | 819 | WP_275103374.1 | DUF4225 domain-containing protein | - |
| LDO72_RS22400 (LDO72_22420) | 69578..69808 | + | 231 | Protein_62 | ISNCY family transposase ISKpn21 | Transposase |
| LDO72_RS22405 (LDO72_22425) | 69828..70112 | + | 285 | Protein_63 | IS3 family transposase | - |
| LDO72_RS22410 (LDO72_22430) | 70209..71129 | - | 921 | WP_069027204.1 | Recombination-promoting nuclease RpnA | VF |
| LDO72_RS22415 (LDO72_22435) | 71538..71704 | + | 167 | Protein_65 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LDO72_RS22420 (LDO72_22440) | 71986..72681 | + | 696 | WP_143790070.1 | haloacid dehalogenase type II | - |
| LDO72_RS22425 (LDO72_22445) | 72786..73151 | - | 366 | WP_010257128.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF | - |
| LDO72_RS22430 (LDO72_22450) | 73148..73468 | - | 321 | WP_022624286.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - |
| LDO72_RS22435 (LDO72_22455) | 73468..75135 | - | 1668 | WP_275103375.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| LDO72_RS22440 (LDO72_22460) | 75135..76037 | - | 903 | WP_275103376.1 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
| LDO72_RS22445 (LDO72_22465) | 76037..78016 | - | 1980 | WP_275103377.1 | Bifunctional polymyxin resistance protein ArnA | VF |
| LDO72_RS22450 (LDO72_22470) | 78013..78996 | - | 984 | WP_069027197.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| LDO72_RS22455 (LDO72_22475) | 78998..80134 | - | 1137 | WP_143790073.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| LDO72_RS22460 (LDO72_22480) | 80833..81411 | + | 579 | WP_275103382.1 | YceI family protein | - |
| LDO72_RS22465 (LDO72_22485) | 81438..82229 | - | 792 | WP_275103378.1 | hypothetical protein | - |
| LDO72_RS22470 (LDO72_22490) | 82226..82726 | - | 501 | WP_115758297.1 | sigma-70 family RNA polymerase sigma factor | - |
| LDO72_RS22475 (LDO72_22495) | 82763..83299 | - | 537 | WP_208443727.1 | tetratricopeptide repeat protein | - |
| LDO72_RS22480 (LDO72_22500) | 83443..84456 | - | 1014 | WP_275103379.1 | Gfo/Idh/MocA family oxidoreductase | - |
| LDO72_RS22485 (LDO72_22505) | 84565..85575 | + | 1011 | WP_031593860.1 | LacI family DNA-binding transcriptional regulator | - |
| LDO72_RS22490 (LDO72_22510) | 86209..86661 | + | 453 | WP_275103325.1 | PACE efflux transporter | - |
| LDO72_RS22495 (LDO72_22515) | 86892..87095 | + | 204 | WP_031593862.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| LDO72_RS22500 (LDO72_22520) | 87276..91493 | - | 4218 | WP_275103326.1 | S6 family peptidase | - |
| LDO72_RS22505 (LDO72_22525) | 92122..92271 | - | 150 | WP_231115726.1 | DUF333 domain-containing protein | - |
| LDO72_RS22510 (LDO72_22530) | 93041..95833 | + | 2793 | WP_275103327.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| LDO72_RS22515 (LDO72_22535) | 95875..96195 | + | 321 | WP_109653701.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| LDO72_RS22520 (LDO72_22540) | 96369..96647 | - | 279 | WP_143991506.1 | hypothetical protein | - |
| LDO72_RS22525 (LDO72_22545) | 96761..97468 | - | 708 | WP_231115724.1 | LuxR family transcriptional regulator | - |
| LDO72_RS22530 (LDO72_22550) | 97434..98024 | - | 591 | WP_031594259.1 | helix-turn-helix domain-containing protein | - |
| LDO72_RS22535 (LDO72_22555) | 99061..99378 | + | 318 | WP_143790082.1 | hypothetical protein | - |
| LDO72_RS22540 (LDO72_22560) | 99388..99609 | + | 222 | WP_143991505.1 | hypothetical protein | - |
| LDO72_RS22545 (LDO72_22565) | 99681..100244 | + | 564 | WP_227438927.1 | Major fimbrial subunit SMF-1 | VF |
| LDO72_RS22550 (LDO72_22570) | 100305..101042 | + | 738 | WP_064703070.1 | putative fimbrial chaperone YadV | VF |
| LDO72_RS22555 (LDO72_22575) | 101068..103653 | + | 2586 | WP_143991504.1 | Outer membrane usher protein HtrE | VF |
| LDO72_RS22560 (LDO72_22580) | 103666..104727 | + | 1062 | WP_275103328.1 | Fimbria adhesin protein | VF |
| LDO72_RS22565 (LDO72_22585) | 104784..105446 | + | 663 | WP_275103329.1 | response regulator transcription factor | - |
| LDO72_RS22570 (LDO72_22590) | 105483..106805 | + | 1323 | WP_163659012.1 | TolC family outer membrane protein | - |
| LDO72_RS22575 (LDO72_22595) | 106831..108090 | + | 1260 | WP_143790088.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| LDO72_RS22580 (LDO72_22600) | 108156..110291 | + | 2136 | WP_275103330.1 | peptidase domain-containing ABC transporter | - |
| LDO72_RS22585 (LDO72_22605) | 110284..110715 | + | 432 | WP_064703076.1 | DcrB-related protein | - |
| LDO72_RS22590 (LDO72_22610) | 110804..111301 | - | 498 | WP_064703077.1 | FidL-like protein | - |
| LDO72_RS22595 (LDO72_22615) | 111298..112212 | - | 915 | WP_275103331.1 | winged helix-turn-helix domain-containing protein | - |
| LDO72_RS22600 (LDO72_22620) | 112536..113150 | + | 615 | WP_275103332.1 | Fatty acid metabolism regulator protein | VF |
| LDO72_RS22605 (LDO72_22625) | 113388..114671 | + | 1284 | WP_275103333.1 | beta-ketoacyl-ACP synthase II | - |
| LDO72_RS22610 (LDO72_22630) | 114912..115796 | + | 885 | WP_069027174.1 | ROK family protein | - |
| LDO72_RS22615 (LDO72_22635) | 115809..116762 | - | 954 | WP_069027173.1 | LacI family DNA-binding transcriptional regulator | - |
| LDO72_RS22620 (LDO72_22640) | 117051..117380 | + | 330 | WP_143790091.1 | PTS sugar transporter subunit IIB | - |
| LDO72_RS22625 (LDO72_22645) | 117377..118705 | + | 1329 | WP_275103334.1 | PTS sugar transporter subunit IIC | - |
| LDO72_RS22630 (LDO72_22650) | 118726..120126 | + | 1401 | WP_275103335.1 | glycoside hydrolase family 1 protein | - |
| LDO72_RS22635 (LDO72_22655) | 120123..120437 | + | 315 | WP_039387287.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| LDO72_RS22640 (LDO72_22660) | 120644..121432 | - | 789 | WP_275103336.1 | MipA/OmpV family protein | - |
| LDO72_RS22645 (LDO72_22665) | 121562..122260 | + | 699 | WP_275103337.1 | Response regulator ArlR | VF |
| LDO72_RS22650 (LDO72_22670) | 122257..123426 | + | 1170 | WP_031594551.1 | ATP-binding protein | - |
| LDO72_RS22655 (LDO72_22675) | 123520..124653 | + | 1134 | WP_031594552.1 | efflux RND transporter periplasmic adaptor subunit | - |
| LDO72_RS22660 (LDO72_22680) | 124650..127694 | + | 3045 | WP_275103338.1 | efflux RND transporter permease subunit | - |
| LDO72_RS22665 (LDO72_22685) | 127745..127990 | - | 246 | WP_010256845.1 | hypothetical protein | - |
| LDO72_RS22670 (LDO72_22690) | 128062..128967 | - | 906 | WP_069027166.1 | LysR family transcriptional regulator | - |
| LDO72_RS22675 (LDO72_22695) | 129072..129854 | + | 783 | WP_033781025.1 | acetolactate decarboxylase | - |
| LDO72_RS22680 (LDO72_22700) | 129869..131548 | + | 1680 | WP_010256852.1 | acetolactate synthase AlsS | - |
| LDO72_RS22685 (LDO72_22705) | 131570..132343 | + | 774 | WP_064703086.1 | Diacetyl reductase [(S)-acetoin forming] | VF |
| LDO72_RS22690 (LDO72_22710) | 132549..134000 | + | 1452 | WP_031593742.1 | Flagellin | VF |
| LDO72_RS22695 (LDO72_22715) | 134339..135652 | + | 1314 | WP_031593743.1 | CitMHS family transporter | - |
| LDO72_RS22700 (LDO72_22720) | 135820..136659 | + | 840 | WP_143790095.1 | MBL fold metallo-hydrolase | - |
| LDO72_RS22705 (LDO72_22725) | 136711..137025 | - | 315 | WP_039387307.1 | HigA family addiction module antitoxin | - |
| LDO72_RS22710 (LDO72_22730) | 137025..137306 | - | 282 | WP_143790096.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LDO72_RS22715 (LDO72_22735) | 137460..137711 | + | 252 | WP_143790097.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| LDO72_RS22720 (LDO72_22740) | 137882..140419 | - | 2538 | WP_275103339.1 | UvrABC system protein A | VF |
| LDO72_RS22725 (LDO72_22745) | 141082..141540 | + | 459 | WP_083070647.1 | hypothetical protein | - |
| LDO72_RS22730 (LDO72_22750) | 141534..141827 | + | 294 | WP_083070583.1 | DUF1493 family protein | - |
| LDO72_RS22735 (LDO72_22755) | 141927..143020 | + | 1094 | WP_139794667.1 | IS3 family transposase ISEhe4 | Transposase |
| LDO72_RS22740 (LDO72_22760) | 143236..144702 | - | 1467 | WP_275103340.1 | YsnF/AvaK domain-containing protein | - |
| LDO72_RS22745 (LDO72_22765) | 144989..145558 | - | 570 | WP_275103341.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| LDO72_RS22750 (LDO72_22770) | 145819..146403 | + | 585 | WP_072036856.1 | GNAT family protein | - |
| LDO72_RS22755 (LDO72_22775) | 146451..148589 | - | 2139 | WP_039387318.1 | EAL domain-containing protein | - |
| LDO72_RS22760 (LDO72_22780) | 148995..149234 | - | 240 | WP_031593758.1 | hypothetical protein | - |
| LDO72_RS22765 (LDO72_22785) | 149597..151030 | - | 1434 | WP_275103342.1 | Methyl-accepting chemotaxis protein II | VF |
| LDO72_RS22770 (LDO72_22790) | 151377..153158 | + | 1782 | WP_275103343.1 | GGDEF and EAL domain-containing protein | - |
| LDO72_RS22775 (LDO72_22795) | 153179..154762 | - | 1584 | WP_275103344.1 | sensor domain-containing diguanylate cyclase | - |
| LDO72_RS22780 (LDO72_22800) | 155166..155375 | - | 210 | WP_064703104.1 | hypothetical protein | - |
| LDO72_RS22785 (LDO72_22805) | 155859..156770 | + | 912 | WP_275103345.1 | GNAT family N-acetyltransferase | - |
| LDO72_RS22790 (LDO72_22810) | 156772..157017 | - | 246 | WP_069027150.1 | hypothetical protein | - |
| LDO72_RS22795 (LDO72_22815) | 157237..157770 | + | 534 | WP_064703105.1 | SRPBCC family protein | - |
| LDO72_RS22800 (LDO72_22820) | 157771..158937 | + | 1167 | WP_275103346.1 | zinc-dependent alcohol dehydrogenase | - |
| LDO72_RS22805 (LDO72_22825) | 159275..159820 | + | 546 | WP_275103347.1 | chorismate mutase | - |
| LDO72_RS22810 (LDO72_22830) | 159843..161033 | + | 1191 | WP_275103348.1 | cytochrome P450 | - |
| LDO72_RS22815 (LDO72_22835) | 161069..162073 | - | 1005 | WP_083070592.1 | LacI family DNA-binding transcriptional regulator | - |
| LDO72_RS22820 (LDO72_22840) | 162103..163512 | - | 1410 | WP_275103349.1 | sucrose-6-phosphate hydrolase | - |
| LDO72_RS22825 (LDO72_22845) | 163512..164882 | - | 1371 | WP_010256928.1 | sucrose-specific PTS transporter subunit IIBC | - |
| LDO72_RS22830 (LDO72_22850) | 164950..166464 | - | 1515 | WP_275103350.1 | carbohydrate porin | - |
| LDO72_RS22835 (LDO72_22855) | 166623..167549 | - | 927 | WP_109653643.1 | aminoimidazole riboside kinase | - |
| LDO72_RS22840 (LDO72_22860) | 167769..168740 | - | 972 | WP_143991483.1 | ParB family protein | - |
| LDO72_RS22845 (LDO72_22865) | 168737..169939 | - | 1203 | WP_010256940.1 | Plasmid partition protein A | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|