MGE detailed information
MGE type: Prophage MGE length: 33782 bp
Accession: NZ_CP084096 Location: 3042612..3076393 Organism: Escherichia coli O78 strain 3 Replicon: chromosome
Accession: NZ_CP084096 Location: 3042612..3076393 Organism: Escherichia coli O78 strain 3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF29_RS14440 (3038385) | 3038385..3039500 | + | 1116 | WP_000258562.1 | putative protein YneK | - |
| LCF29_RS14445 (3039651) | 3039651..3040841 | + | 1191 | WP_000210809.1 | L-arabinose MFS transporter | - |
| LCF29_RS14450 (3040866) | 3040866..3041531 | - | 666 | WP_000885019.1 | NAAT family transporter MarC | - |
| LCF29_RS14455 (3041743) | 3041743..3042177 | + | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| LCF29_RS14460 (3042197) | 3042197..3042580 | + | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| LCF29_RS14465 (3042612) | 3042612..3042830 | + | 219 | WP_000803524.1 | multiple antibiotic resistance protein MarB | - |
| LCF29_RS14470 (3042861) | 3042861..3043760 | - | 900 | WP_000087193.1 | O-acetylserine/cysteine exporter | - |
| LCF29_RS14475 (3043955) | 3043955..3045142 | + | 1188 | WP_021577478.1 | efflux MFS transporter YdeE | - |
| LCF29_RS14480 (3045269) | 3045269..3045364 | + | 96 | WP_000901367.1 | protein MgtS | - |
| LCF29_RS14485 (3045364) | 3045364..3045468 | + | 105 | WP_211180496.1 | protein MgtT | - |
| LCF29_RS14490 (3045583) | 3045583..3046473 | - | 891 | WP_000592844.1 | diguanylate cyclase DgcZ | - |
| LCF29_RS14495 (3046728) | 3046728..3047120 | - | 393 | WP_032223321.1 | YdeI family stress tolerance OB fold protein | - |
| LCF29_RS14500 (3047396) | 3047396..3047914 | + | 519 | WP_001024558.1 | 2-oxo-tetronate isomerase | - |
| LCF29_RS14505 (3047959) | 3047959..3050004 | - | 2046 | WP_024257804.1 | peptidyl-dipeptidase Dcp | - |
| LCF29_RS14510 (3050141) | 3050141..3050887 | + | 747 | WP_000636575.1 | hypothetical protein | VF |
| LCF29_RS14515 (3050976) | 3050976..3051662 | + | 687 | WP_000215556.1 | DNA-binding transcriptional regulator rspR | - |
| LCF29_RS14520 (3051839) | 3051839..3052042 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LCF29_RS14525 (3052078) | 3052078..3053379 | - | 1302 | Protein_2852 | mannitol dehydrogenase family protein | - |
| LCF29_RS14535 (3054145) | 3054145..3054285 | - | 141 | WP_225343795.1 | cold shock domain-containing protein | - |
| LCF29_RS14540 (3054318) | 3054318..3055015 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| LCF29_RS14545 (3055031) | 3055031..3055252 | - | 222 | Protein_2856 | lysozyme | - |
| LCF29_RS14550 (3055249) | 3055249..3055560 | - | 312 | WP_000189914.1 | YdfR family protein | - |
| LCF29_RS14555 (3055565) | 3055565..3055780 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LCF29_RS14560 (3056000) | 3056000..3056170 | + | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| LCF29_RS14565 (3056534) | 3056534..3056749 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LCF29_RS14570 (3057050) | 3057050..3057262 | + | 213 | WP_000087757.1 | cold shock-like protein CspF | - |
| LCF29_RS14575 (3057317) | 3057317..3057406 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| LCF29_RS14580 (3057684) | 3057684..3058436 | - | 753 | WP_001047135.1 | antitermination protein | - |
| LCF29_RS14585 (3058450) | 3058450..3059499 | - | 1050 | WP_001265195.1 | DUF968 domain-containing protein | - |
| LCF29_RS14590 (3059501) | 3059501..3059779 | - | 279 | WP_032140164.1 | hypothetical protein | - |
| LCF29_RS14595 (3059846) | 3059846..3060097 | - | 252 | WP_000981000.1 | protein Rem | - |
| LCF29_RS14600 (3060314) | 3060314..3060469 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LCF29_RS14605 (3060541) | 3060541..3060828 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LCF29_RS14610 (3060828) | 3060828..3061067 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LCF29_RS14615 (3061092) | 3061092..3061397 | + | 306 | WP_001326990.1 | protein YdfV | - |
| LCF29_RS14620 (3061600) | 3061600..3061932 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LCF29_RS14625 (3062369) | 3062369..3062518 | - | 150 | WP_180302674.1 | ISNCY family transposase ISCARN112 | Transposase |
| LCF29_RS14630 (3062639) | 3062639..3063688 | - | 1050 | Protein_2873 | ISNCY family transposase ISCARN112 | Transposase |
| LCF29_RS14635 (3063743) | 3063743..3064162 | - | 420 | WP_001151195.1 | DUF977 family protein | - |
| LCF29_RS14640 (3064203) | 3064203..3065168 | - | 966 | WP_000054506.1 | hypothetical protein | - |
| LCF29_RS14645 (3065149) | 3065149..3065670 | - | 522 | WP_000705349.1 | toxin YdaT family protein | - |
| LCF29_RS14650 (3065654) | 3065654..3065881 | - | 228 | WP_000476993.1 | Cro/CI family transcriptional regulator | - |
| LCF29_RS14655 (3065959) | 3065959..3066366 | + | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| LCF29_RS14660 (3066559) | 3066559..3066714 | + | 156 | WP_000379589.1 | DUF1391 family protein | - |
| LCF29_RS14665 (3066716) | 3066716..3067291 | + | 576 | WP_000344953.1 | hypothetical protein | - |
| LCF29_RS14670 (3067778) | 3067778..3067966 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LCF29_RS14675 (3067963) | 3067963..3068154 | + | 192 | WP_001083280.1 | lysis protein YdfD | - |
| LCF29_RS14680 (3068248) | 3068248..3070719 | + | 2472 | WP_044862779.1 | exonuclease | - |
| LCF29_RS14685 (3070792) | 3070792..3071043 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| LCF29_RS14690 (3071078) | 3071078..3072358 | + | 1281 | WP_047082556.1 | hypothetical protein ; Integrase | Integrase |
| LCF29_RS14695 (3072546) | 3072546..3073565 | - | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| LCF29_RS14700 (3073577) | 3073577..3074791 | - | 1215 | WP_024257740.1 | starvation-sensing protein RspA | - |
| LCF29_RS14705 (3074972) | 3074972..3075322 | - | 351 | WP_000598291.1 | YnfA family protein | - |
| LCF29_RS14710 (3075457) | 3075457..3075798 | + | 342 | WP_000705197.1 | DUF1283 family protein | - |
| LCF29_RS14715 (3075833) | 3075833..3076393 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| LCF29_RS14720 (3076396) | 3076396..3077106 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LCF29_RS14725 (3077214) | 3077214..3077519 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| LCF29_RS14730 (3077718) | 3077718..3080144 | + | 2427 | WP_023154523.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|