MGE detailed information
MGE type: Prophage MGE length: 63288 bp
Accession: NZ_CP084096 Location: 2801141..2864428 Organism: Escherichia coli O78 strain 3 Replicon: chromosome
Accession: NZ_CP084096 Location: 2801141..2864428 Organism: Escherichia coli O78 strain 3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF29_RS13380 (2796536) | 2796536..2797501 | + | 966 | WP_001261208.1 | L-Ala-D/L-Glu epimerase | - |
| LCF29_RS13385 (2797476) | 2797476..2798204 | - | 729 | WP_225343542.1 | murein tripeptide amidase MpaA | - |
| LCF29_RS13390 (2798495) | 2798495..2799133 | - | 639 | WP_071337771.1 | SDR family oxidoreductase | - |
| LCF29_RS13395 (2799151) | 2799151..2800083 | - | 933 | WP_000680618.1 | alpha/beta hydrolase | - |
| LCF29_RS13400 (2800083) | 2800083..2801003 | - | 921 | WP_024257745.1 | alpha/beta hydrolase | - |
| LCF29_RS13405 (2801141) | 2801141..2802040 | + | 900 | WP_000817685.1 | hypothetical protein | VF |
| LCF29_RS13410 (2802377) | 2802377..2803990 | + | 1614 | WP_000683020.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| LCF29_RS13415 (2804041) | 2804041..2805072 | - | 1032 | WP_000559900.1 | low conductance mechanosensitive channel YnaI | - |
| LCF29_RS13420 (2805316) | 2805316..2805573 | + | 258 | WP_000605090.1 | DUF2534 family protein | - |
| LCF29_RS13425 (2805623) | 2805623..2806573 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| LCF29_RS13430 (2806725) | 2806725..2807477 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| LCF29_RS13435 (2807672) | 2807672..2808187 | - | 516 | WP_000945005.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| LCF29_RS13440 (2808198) | 2808198..2809724 | - | 1527 | WP_000062967.1 | p-aminobenzoyl-glutamate transporter | - |
| LCF29_RS13445 (2809761) | 2809761..2811206 | - | 1446 | WP_225343543.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| LCF29_RS13450 (2811206) | 2811206..2812516 | - | 1311 | WP_071337715.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| LCF29_RS13455 (2812692) | 2812692..2813600 | + | 909 | WP_000885453.1 | LysR family transcriptional regulator | - |
| LCF29_RS13460 (2813930) | 2813930..2814493 | + | 564 | WP_001046829.1 | DNA endonuclease SmrA | - |
| LCF29_RS13465 (2814514) | 2814514..2815746 | - | 1233 | WP_024257744.1 | diguanylate cyclase DgcM | - |
| LCF29_RS13470 (2815940) | 2815940..2815987 | + | 48 | WP_211180494.1 | protein YnaN | - |
| LCF29_RS13475 (2816001) | 2816001..2816984 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| LCF29_RS13480 (2817259) | 2817259..2817429 | + | 171 | WP_001625136.1 | protein YnaL | - |
| LCF29_RS13485 (2817462) | 2817462..2818835 | + | 1374 | WP_000123746.1 | ATP-dependent RNA helicase DbpA | - |
| LCF29_RS13490 (2818964) | 2818964..2819899 | - | 936 | WP_001157403.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| LCF29_RS13495 (2819951) | 2819951..2821186 | - | 1236 | WP_000040852.1 | hypothetical protein ; Integrase | Integrase |
| LCF29_RS13500 (2821188) | 2821188..2821403 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (2821507) | 2821507..2821685 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2821507) | 2821507..2821685 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2821507) | 2821507..2821685 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (2821507) | 2821507..2821685 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| LCF29_RS13505 (2821482) | 2821482..2821691 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| LCF29_RS13510 (2821684) | 2821684..2821878 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| LCF29_RS13515 (2821935) | 2821935..2822744 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| LCF29_RS13520 (2822737) | 2822737..2825337 | - | 2601 | WP_225343544.1 | exodeoxyribonuclease VIII | - |
| LCF29_RS13525 (2825439) | 2825439..2825714 | - | 276 | WP_000632297.1 | protein RacC | - |
| LCF29_RS13530 (2825789) | 2825789..2825959 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| LCF29_RS13535 (2825959) | 2825959..2826180 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| LCF29_RS13540 (2826622) | 2826622..2827110 | + | 489 | WP_001324055.1 | superinfection exclusion B family protein | - |
| LCF29_RS13545 (2827107) | 2827107..2827262 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| LCF29_RS25740 (2827273) | 2827273..2827407 | - | 135 | WP_000233809.1 | phage protein | - |
| LCF29_RS13550 (2827698) | 2827698..2828117 | - | 420 | WP_000233320.1 | helix-turn-helix domain-containing protein | - |
| LCF29_RS13555 (2828197) | 2828197..2828451 | + | 255 | WP_001072343.1 | hypothetical protein | - |
| LCF29_RS13560 (2828448) | 2828448..2828870 | + | 423 | WP_000693802.1 | toxin YdaT family protein | - |
| LCF29_RS13565 (2828883) | 2828883..2829740 | + | 858 | WP_000899746.1 | YdaU family protein | - |
| LCF29_RS13570 (2829747) | 2829747..2830493 | + | 747 | WP_000788968.1 | ATP-binding protein | - |
| LCF29_RS13575 (2830516) | 2830516..2831277 | + | 762 | WP_000450674.1 | DUF1627 domain-containing protein | - |
| LCF29_RS13580 (2831293) | 2831293..2831709 | + | 417 | WP_001151122.1 | DUF977 family protein | - |
| LCF29_RS13590 (2833244) | 2833244..2834206 | + | 963 | WP_014639476.1 | hypothetical protein | - |
| LCF29_RS13595 (2834222) | 2834222..2835223 | + | 1002 | WP_000354966.1 | hypothetical protein | - |
| LCF29_RS13600 (2835844) | 2835844..2836182 | - | 339 | WP_000149055.1 | DUF1971 domain-containing protein | - |
| LCF29_RS13605 (2836996) | 2836996..2837595 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| LCF29_RS13610 (2837595) | 2837595..2837885 | + | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| LCF29_RS13615 (2837882) | 2837882..2838424 | + | 543 | WP_000640161.1 | DUF1133 family protein | - |
| LCF29_RS13620 (2839637) | 2839637..2839897 | + | 261 | Protein_2670 | cell envelope integrity protein TolA | - |
| LCF29_RS13625 (2840069) | 2840069..2840443 | + | 375 | WP_001348108.1 | cell envelope integrity TolA C-terminal domain-containing protein | - |
| LCF29_RS13630 (2840695) | 2840695..2840910 | + | 216 | WP_225343545.1 | class II holin family protein | - |
| LCF29_RS13635 (2840910) | 2840910..2841407 | + | 498 | WP_001135310.1 | lysozyme RrrD | - |
| LCF29_RS25745 (2841624) | 2841624..2841809 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| LCF29_RS13645 (2842006) | 2842006..2843463 | + | 1458 | WP_001097893.1 | Trk system potassium transporter TrkG | - |
| LCF29_RS13650 (2843601) | 2843601..2843858 | + | 258 | Protein_2676 | ParB/Srx family N-terminal domain-containing protein | - |
| LCF29_RS13655 (2844382) | 2844382..2845314 | + | 933 | WP_001614535.1 | hypothetical protein | - |
| LCF29_RS13660 (2845292) | 2845292..2845501 | + | 210 | WP_000126788.1 | hypothetical protein | - |
| LCF29_RS13665 (2845505) | 2845505..2846599 | + | 1095 | WP_024240905.1 | terminase small subunit | - |
| LCF29_RS13670 (2846580) | 2846580..2847881 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| LCF29_RS13675 (2847884) | 2847884..2848991 | + | 1108 | Protein_2681 | DUF4055 domain-containing protein | - |
| LCF29_RS13680 (2848990) | 2848990..2849724 | + | 735 | Protein_2682 | phage tail tube protein | - |
| LCF29_RS13685 (2849875) | 2849875..2850234 | + | 360 | WP_012565075.1 | protein YdaY | - |
| LCF29_RS13690 (2850706) | 2850706..2853939 | + | 3234 | WP_225343547.1 | phage tail tape measure protein | - |
| LCF29_RS13695 (2853932) | 2853932..2854270 | + | 339 | WP_000024051.1 | phage tail protein | - |
| LCF29_RS13700 (2854270) | 2854270..2854968 | + | 699 | WP_225343548.1 | phage minor tail protein L | - |
| LCF29_RS13705 (2854973) | 2854973..2855716 | + | 744 | WP_032241748.1 | C40 family peptidase | - |
| LCF29_RS13710 (2855713) | 2855713..2856255 | + | 543 | WP_001377948.1 | tail assembly protein | - |
| LCF29_RS13715 (2856316) | 2856316..2859711 | + | 3396 | WP_225343549.1 | host specificity protein J | - |
| LCF29_RS13720 (2859779) | 2859779..2860378 | + | 600 | WP_001233158.1 | hypothetical protein | VF |
| LCF29_RS13725 (2860443) | 2860443..2863844 | + | 3402 | WP_225343550.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LCF29_RS13730 (2863844) | 2863844..2864428 | + | 585 | WP_096216083.1 | tail fiber assembly protein | - |
| LCF29_RS13735 (2864641) | 2864641..2865498 | - | 858 | WP_000968131.1 | iron/manganese ABC transporter permease subunit SitD | - |
| LCF29_RS13740 (2865495) | 2865495..2866352 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| LCF29_RS13745 (2866349) | 2866349..2867176 | - | 828 | WP_000983721.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| LCF29_RS13750 (2867176) | 2867176..2868090 | - | 915 | WP_000286867.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| LCF29_RS13755 (2868675) | 2868675..2869109 | - | 435 | WP_001295593.1 | universal stress protein UspF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|