MGE detailed information
MGE type: Prophage MGE length: 61905 bp
Accession: NZ_CP084032 Location: 1947009..2008913 Organism: Pectobacterium colocasium strain LJ1 Replicon: chromosome
Accession: NZ_CP084032 Location: 1947009..2008913 Organism: Pectobacterium colocasium strain LJ1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF41_RS08785 | 1942527..1944626 | + | 2100 | WP_225087725.1 | ATP-dependent DNA helicase DinG | - |
| LCF41_RS08790 | 1945141..1946574 | + | 1434 | WP_225087726.1 | serralysin family metalloprotease | - |
| LCF41_RS08795 | 1946629..1946991 | + | 363 | WP_225087727.1 | protease inhibitor Inh/omp19 family protein | - |
| LCF41_RS08800 | 1947009..1948736 | + | 1728 | WP_225087728.1 | Type I secretion system ATP-binding protein PrsD | VF |
| LCF41_RS08805 | 1948764..1950092 | + | 1329 | WP_225087729.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| LCF41_RS08810 | 1950095..1951462 | + | 1368 | WP_225087730.1 | TolC family outer membrane protein | - |
| LCF41_RS08815 | 1951676..1952005 | + | 330 | WP_010281025.1 | putative holin | - |
| LCF41_RS08820 | 1952007..1952618 | + | 612 | WP_225087731.1 | transglycosylase SLT domain-containing protein | - |
| LCF41_RS08825 | 1952608..1953282 | + | 675 | WP_225087732.1 | hypothetical protein | - |
| LCF41_RS08830 | 1953272..1953601 | + | 330 | WP_180741352.1 | hypothetical protein | - |
| LCF41_RS08835 | 1953594..1953905 | + | 312 | WP_225087733.1 | hypothetical protein | - |
| LCF41_RS08840 | 1954168..1954635 | + | 468 | WP_225087734.1 | Gp37 family protein | - |
| LCF41_RS08845 | 1954632..1954829 | + | 198 | WP_107167957.1 | hypothetical protein | - |
| LCF41_RS08850 | 1954819..1956246 | + | 1428 | WP_225087735.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LCF41_RS08855 | 1956246..1956770 | + | 525 | WP_005972713.1 | phage major tail tube protein | - |
| LCF41_RS08860 | 1956827..1957123 | + | 297 | WP_225087737.1 | ferredoxin | - |
| LCF41_RS08865 | 1957263..1957583 | + | 321 | WP_225087738.1 | phage tail assembly protein | - |
| LCF41_RS22245 | 1957680..1957808 | + | 129 | WP_263059357.1 | hypothetical protein | - |
| LCF41_RS08870 | 1957894..1960365 | + | 2472 | WP_225088126.1 | phage tail tape measure protein | - |
| LCF41_RS08875 | 1960365..1961294 | + | 930 | WP_225087739.1 | phage tail protein | - |
| LCF41_RS08880 | 1961284..1961496 | + | 213 | WP_180741347.1 | tail protein X | - |
| LCF41_RS08885 | 1961484..1962644 | + | 1161 | WP_225087740.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LCF41_RS08890 | 1962641..1963222 | + | 582 | WP_225087741.1 | phage baseplate assembly protein V | - |
| LCF41_RS08895 | 1963281..1963628 | + | 348 | WP_181847671.1 | GPW/gp25 family protein | - |
| LCF41_RS08900 | 1963619..1964722 | + | 1104 | WP_225087742.1 | baseplate J/gp47 family protein | - |
| LCF41_RS08905 | 1964715..1965296 | + | 582 | WP_225087743.1 | phage tail protein I | - |
| LCF41_RS08910 | 1965299..1967185 | + | 1887 | WP_225087746.1 | phage tail protein | - |
| LCF41_RS08915 | 1967444..1967665 | + | 222 | Protein_1738 | IS630 family transposase ISEc40 | Transposase |
| LCF41_RS08920 | 1967693..1967967 | + | 275 | Protein_1739 | helix-turn-helix domain-containing protein | - |
| LCF41_RS08925 | 1968077..1969045 | + | 969 | WP_180741340.1 | DNA-binding protein YbiB | - |
| LCF41_RS08930 | 1969131..1970999 | + | 1869 | WP_225087747.1 | M3 family metallopeptidase | - |
| LCF41_RS08935 | 1971122..1972444 | + | 1323 | WP_225087748.1 | IS4 family transposase IS1271 | Transposase |
| LCF41_RS08940 | 1972474..1973196 | - | 723 | WP_039351001.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| LCF41_RS08945 | 1973193..1973852 | - | 660 | WP_015839847.1 | glutamine ABC transporter permease GlnP | - |
| LCF41_RS08950 | 1973879..1974625 | - | 747 | WP_010294862.1 | glutamine ABC transporter substrate-binding protein GlnH | - |
| LCF41_RS08955 | 1975039..1975542 | - | 504 | WP_015839848.1 | DNA starvation/stationary phase protection protein Dps | - |
| LCF41_RS08960 | 1975889..1976440 | + | 552 | WP_225087749.1 | adenylate kinase | - |
| LCF41_RS08965 | 1976428..1977315 | - | 888 | WP_225087751.1 | threonine/homoserine exporter RhtA | - |
| LCF41_RS08970 | 1977692..1978207 | + | 516 | WP_205554660.1 | Outer membrane protein X | VF |
| LCF41_RS08975 | 1978553..1979722 | + | 1170 | WP_225087753.1 | MFS transporter | - |
| LCF41_RS08980 | 1979764..1981167 | - | 1404 | WP_225087754.1 | EmmdR/YeeO family multidrug/toxin efflux MATE transporter | - |
| LCF41_RS08985 | 1981536..1982072 | + | 537 | WP_225087756.1 | rhodanese family protein | - |
| LCF41_RS08990 | 1982137..1982466 | + | 330 | WP_225087757.1 | DHCW motif cupin fold protein | - |
| LCF41_RS22250 | 1982710..1982997 | + | 288 | WP_284144952.1 | GyrI-like domain-containing protein | - |
| LCF41_RS22255 | 1983009..1983173 | + | 165 | WP_284144953.1 | hypothetical protein | - |
| LCF41_RS09000 | 1983337..1984215 | - | 879 | WP_225087759.1 | cell envelope biogenesis protein OmpA | - |
| LCF41_RS09005 | 1984865..1985095 | - | 231 | Protein_1757 | integrase arm-type DNA-binding domain-containing protein | - |
| LCF41_RS09010 | 1985430..1985789 | - | 360 | WP_225087760.1 | hypothetical protein | - |
| LCF41_RS09015 | 1985847..1986086 | - | 240 | WP_225088127.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LCF41_RS09020 | 1986133..1986417 | - | 285 | WP_225087761.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LCF41_RS09025 | 1986407..1986652 | - | 246 | WP_225087762.1 | CopG family ribbon-helix-helix protein | - |
| LCF41_RS09030 | 1987387..1988709 | + | 1323 | WP_225087763.1 | DUF4062 domain-containing protein | - |
| LCF41_RS09035 | 1989752..1992358 | - | 2607 | WP_225087764.1 | TOPRIM and DUF927 domain-containing protein | - |
| LCF41_RS09040 | 1992515..1992712 | - | 198 | WP_225088128.1 | host cell division inhibitor Icd-like protein | - |
| LCF41_RS09045 | 1992748..1992930 | - | 183 | Protein_1765 | host cell division inhibitor Icd-like protein | - |
| LCF41_RS09050 | 1993188..1993403 | - | 216 | WP_010286533.1 | AlpA family phage regulatory protein | - |
| LCF41_RS09055 | 1993680..1994930 | - | 1251 | WP_225087766.1 | Prophage integrase IntA ; Integrase | Integrase |
| LCF41_RS09065 | 1995263..1997011 | - | 1749 | WP_225087767.1 | LPS biosynthesis-modulating metalloenzyme YejM | - |
| LCF41_RS09070 | 1997026..1997256 | - | 231 | WP_015839894.1 | YejL family protein | - |
| LCF41_RS09075 | 1997492..1998502 | + | 1011 | WP_225087768.1 | nucleoid-associated protein YejK | - |
| LCF41_RS09080 | 1998586..1999734 | - | 1149 | WP_225087769.1 | heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein | - |
| LCF41_RS09085 | 1999834..2000118 | - | 285 | WP_180741325.1 | 50S ribosomal protein L25 | - |
| LCF41_RS09090 | 2000254..2002032 | - | 1779 | WP_225087770.1 | DEAD/DEAH box helicase | - |
| LCF41_RS09095 | 2002035..2002274 | - | 240 | WP_225087771.1 | YecH family protein | - |
| LCF41_RS09100 | 2002484..2003179 | + | 696 | WP_225087772.1 | 16S rRNA pseudouridine(516) synthase RsuA | - |
| LCF41_RS09105 | 2003220..2004410 | + | 1191 | WP_225087773.1 | Bcr/CflA family multidrug efflux MFS transporter | - |
| LCF41_RS09110 | 2004792..2005136 | + | 345 | WP_015839902.1 | YejG family protein | - |
| LCF41_RS09115 | 2005176..2006792 | - | 1617 | WP_225087774.1 | putative ABC transporter ATP-binding protein YejF | VF |
| LCF41_RS09120 | 2006794..2007819 | - | 1026 | WP_225087775.1 | microcin C ABC transporter permease | - |
| LCF41_RS09125 | 2007816..2008913 | - | 1098 | WP_225087776.1 | microcin C ABC transporter permease YejB | - |
| LCF41_RS09130 | 2008923..2010731 | - | 1809 | WP_225087777.1 | extracellular solute-binding protein | - |
| LCF41_RS09135 | 2011163..2011747 | - | 585 | WP_225087779.1 | bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase | - |
| LCF41_RS09140 | 2012070..2012771 | - | 702 | WP_225087780.1 | phosphatase PAP2 family protein | - |
| LCF41_RS09145 | 2012810..2013796 | - | 987 | WP_225087781.1 | GTP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|