MGE detailed information
MGE type: Genomic_island MGE length: 24617 bp
Accession: NZ_CP084032 Location: 1023790..1048406 Organism: Pectobacterium colocasium strain LJ1 Replicon: chromosome
Accession: NZ_CP084032 Location: 1023790..1048406 Organism: Pectobacterium colocasium strain LJ1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF41_RS04540 | 1019691..1021559 | - | 1869 | WP_225087071.1 | Svx/AvrXca family virulence/avirulence protein | - |
| LCF41_RS04545 | 1021740..1023056 | - | 1317 | WP_225087072.1 | cytosine permease | - |
| LCF41_RS04550 | 1023071..1023760 | - | 690 | WP_225087073.1 | helix-turn-helix transcriptional regulator | - |
| LCF41_RS04555 | 1023790..1024203 | - | 414 | WP_225087074.1 | GNAT family N-acetyltransferase | - |
| LCF41_RS04560 | 1024870..1025163 | + | 294 | WP_225087075.1 | type I toxin-antitoxin system antitoxin YafN | - |
| LCF41_RS04565 | 1025160..1025565 | + | 406 | Protein_886 | type II toxin-antitoxin system YafO family toxin | - |
| LCF41_RS04570 | 1025895..1028117 | + | 2223 | WP_225087076.1 | FhuE receptor | VF |
| LCF41_RS04575 | 1028265..1028468 | + | 204 | WP_225087077.1 | AAA family ATPase | - |
| LCF41_RS04580 | 1028532..1029101 | - | 570 | WP_225087078.1 | Laminin-binding fimbrial subunit ElfA | VF |
| LCF41_RS04585 | 1029119..1030153 | - | 1035 | WP_225087079.1 | hypothetical protein | - |
| LCF41_RS04590 | 1030170..1030919 | - | 750 | WP_225087080.1 | Chaperone protein PapD | VF |
| LCF41_RS04595 | 1030957..1033497 | - | 2541 | WP_225087081.1 | Outer membrane usher protein PapC | VF |
| LCF41_RS04600 | 1033585..1034133 | - | 549 | WP_225087082.1 | Fimbria A protein | VF |
| LCF41_RS04605 | 1034826..1035599 | + | 774 | WP_225087083.1 | CadC family transcriptional regulator | - |
| LCF41_RS04610 | 1035586..1036056 | + | 471 | WP_225087084.1 | FidL | - |
| LCF41_RS04615 | 1036193..1036744 | - | 552 | WP_225088099.1 | copper-binding periplasmic metallochaperone CueP | - |
| LCF41_RS04620 | 1036958..1037359 | - | 402 | WP_180743333.1 | VOC family protein | - |
| LCF41_RS04625 | 1037448..1038011 | - | 564 | WP_225087085.1 | TetR/AcrR family transcriptional regulator | - |
| LCF41_RS04630 | 1038144..1038677 | + | 534 | WP_180743331.1 | HPP family protein | - |
| LCF41_RS04635 | 1038767..1039024 | - | 258 | Protein_900 | TetR/AcrR family transcriptional regulator | - |
| LCF41_RS04640 | 1039028..1039360 | + | 333 | Protein_901 | NAD(P)H-dependent oxidoreductase | - |
| LCF41_RS04645 | 1039421..1040623 | + | 1203 | WP_225087086.1 | methyltransferase | - |
| LCF41_RS04650 | 1040836..1041255 | + | 420 | WP_225087087.1 | hypothetical protein | - |
| LCF41_RS04655 | 1041371..1042558 | - | 1188 | WP_225087088.1 | MFS transporter | - |
| LCF41_RS04660 | 1042674..1043630 | + | 957 | WP_225087089.1 | AraC family transcriptional regulator | - |
| LCF41_RS04665 | 1043961..1044440 | + | 480 | WP_225087090.1 | hypothetical protein | - |
| LCF41_RS04670 | 1044620..1044781 | - | 162 | WP_225087091.1 | hypothetical protein | - |
| LCF41_RS04675 | 1045564..1046550 | - | 987 | WP_225087092.1 | SIR2 family protein | - |
| LCF41_RS04680 | 1046946..1047161 | - | 216 | WP_225087093.1 | CcdB family protein | Toxin Detail |
| LCF41_RS04685 | 1047239..1047457 | - | 219 | WP_225087094.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LCF41_RS04690 | 1047472..1047720 | - | 249 | WP_010299606.1 | helix-turn-helix transcriptional regulator | - |
| LCF41_RS04695 | 1047805..1048059 | - | 255 | WP_225087095.1 | helix-turn-helix transcriptional regulator | - |
| LCF41_RS04700 | 1048164..1048406 | + | 243 | WP_225087096.1 | helix-turn-helix transcriptional regulator | - |
| LCF41_RS22230 | 1048878..1049009 | + | 132 | WP_284144944.1 | hypothetical protein | - |
| LCF41_RS04710 | 1049241..1051394 | + | 2154 | WP_225087097.1 | ornithine decarboxylase | - |
| LCF41_RS04715 | 1051455..1052906 | - | 1452 | WP_225087098.1 | L-asparagine permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|