MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 43849 bp
Accession: NZ_CP084023 Location: 3056525..3100373 Organism: Pectobacterium aroidearum strain LJ2 Replicon: chromosome
Accession: NZ_CP084023 Location: 3056525..3100373 Organism: Pectobacterium aroidearum strain LJ2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF43_RS13910 | 3051583..3052935 | + | 1353 | WP_225181163.1 | 3-carboxy-cis,cis-muconate cycloisomerase | - |
| LCF43_RS13915 | 3053080..3054501 | + | 1422 | WP_225181164.1 | DASS family sodium-coupled anion symporter | - |
| LCF43_RS13920 | 3054586..3054753 | - | 168 | WP_180777106.1 | YqaE/Pmp3 family membrane protein | - |
| LCF43_RS13925 | 3054929..3055315 | + | 387 | WP_225181165.1 | lysozyme inhibitor LprI family protein | - |
| LCF43_RS13935 | 3055557..3056354 | + | 798 | WP_225181166.1 | DgsA anti-repressor MtfA | - |
| LCF43_RS13945 | 3056702..3057973 | + | 1272 | WP_225181167.1 | Prophage integrase IntS ; Integrase | Integrase |
| LCF43_RS13950 | 3058107..3058421 | - | 315 | WP_039516912.1 | helix-turn-helix transcriptional regulator | - |
| LCF43_RS13955 | 3058607..3058921 | - | 315 | WP_038667684.1 | helix-turn-helix transcriptional regulator | - |
| LCF43_RS13960 | 3059068..3059340 | + | 273 | WP_039468625.1 | helix-turn-helix transcriptional regulator | - |
| LCF43_RS13965 | 3059755..3060669 | + | 915 | WP_225181168.1 | hypothetical protein | - |
| LCF43_RS13970 | 3060823..3061017 | + | 195 | WP_039508997.1 | AlpA family transcriptional regulator | - |
| LCF43_RS13975 | 3061034..3061618 | + | 585 | Protein_2736 | DUF2857 domain-containing protein | - |
| LCF43_RS13980 | 3061608..3061817 | + | 210 | WP_025918861.1 | TraR/DksA family transcriptional regulator | - |
| LCF43_RS13985 | 3062244..3063158 | - | 915 | WP_225181169.1 | hypothetical protein | - |
| LCF43_RS13990 | 3063704..3063925 | + | 222 | WP_225181170.1 | hypothetical protein | - |
| LCF43_RS13995 | 3064005..3064670 | + | 666 | WP_225181171.1 | Type IV secretion system protein virB1 | VF |
| LCF43_RS14000 | 3064667..3064948 | + | 282 | WP_155482730.1 | TrbC/VirB2 family protein | - |
| LCF43_RS14005 | 3064958..3067705 | + | 2748 | WP_225181172.1 | Type IV secretion system protein virB4 | VF |
| LCF43_RS14010 | 3067729..3068445 | + | 717 | WP_205947877.1 | type IV secretion system protein | - |
| LCF43_RS14015 | 3068456..3068680 | + | 225 | WP_205947876.1 | EexN family lipoprotein | - |
| LCF43_RS14020 | 3068692..3069732 | + | 1041 | WP_205947875.1 | type IV secretion system protein | - |
| LCF43_RS14025 | 3069821..3069961 | + | 141 | WP_025918851.1 | hypothetical protein | - |
| LCF43_RS14030 | 3069954..3070637 | + | 684 | WP_025918850.1 | Type IV secretion system protein PtlE | VF |
| LCF43_RS14035 | 3070634..3071527 | + | 894 | WP_225181173.1 | P-type conjugative transfer protein VirB9 | - |
| LCF43_RS14040 | 3071524..3072747 | + | 1224 | WP_225181174.1 | Type IV secretion system protein virB10 | VF |
| LCF43_RS14045 | 3072737..3073753 | + | 1017 | WP_225181175.1 | Type IV secretion system protein VirB11 | VF |
| LCF43_RS14050 | 3073797..3074099 | + | 303 | WP_225181176.1 | conjugal transfer protein | - |
| LCF43_RS14055 | 3074894..3076630 | + | 1737 | WP_225181177.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LCF43_RS14060 | 3076639..3077442 | + | 804 | WP_225181178.1 | MobC family replication-relaxation protein | - |
| LCF43_RS14065 | 3077435..3077689 | + | 255 | WP_225181179.1 | hypothetical protein | - |
| LCF43_RS14070 | 3078287..3078463 | + | 177 | Protein_2755 | site-specific DNA-methyltransferase | - |
| LCF43_RS14075 | 3078795..3079448 | + | 654 | WP_225181180.1 | hypothetical protein | - |
| LCF43_RS14080 | 3079463..3081040 | + | 1578 | WP_225181181.1 | RNA-directed DNA polymerase | - |
| LCF43_RS14085 | 3081739..3082524 | + | 786 | WP_225181182.1 | hypothetical protein | - |
| LCF43_RS14095 | 3082948..3083892 | - | 945 | WP_225181183.1 | zincin-like metallopeptidase domain-containing protein | - |
| LCF43_RS14100 | 3084457..3084999 | - | 543 | WP_225181184.1 | hypothetical protein | - |
| LCF43_RS14105 | 3084975..3085391 | - | 417 | WP_225181185.1 | hypothetical protein | - |
| LCF43_RS14110 | 3085537..3086648 | + | 1112 | WP_225181186.1 | IS3 family transposase IS1400 | Transposase |
| LCF43_RS14115 | 3086886..3087761 | + | 876 | WP_225181187.1 | hypothetical protein | - |
| LCF43_RS14120 | 3087961..3088563 | - | 603 | WP_065684227.1 | IS91 family transposase ISMno24 | Transposase |
| LCF43_RS14125 | 3088746..3089711 | - | 966 | WP_006326560.1 | hypothetical protein | - |
| LCF43_RS14130 | 3089979..3090140 | + | 162 | Protein_2766 | mobilization protein mobC | - |
| LCF43_RS14135 | 3090195..3090509 | - | 315 | WP_119880390.1 | CcdB family protein | Toxin Detail |
| LCF43_RS14140 | 3090512..3090748 | - | 237 | WP_012769207.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| LCF43_RS14145 | 3091068..3092015 | - | 948 | Protein_2769 | zincin-like metallopeptidase domain-containing protein | - |
| LCF43_RS14150 | 3092789..3095098 | + | 2310 | WP_205946791.1 | TerB N-terminal domain-containing protein | - |
| LCF43_RS14155 | 3095102..3096418 | + | 1317 | WP_043901839.1 | ATP-binding protein | - |
| LCF43_RS14160 | 3096415..3098613 | + | 2199 | WP_129713334.1 | DEAD/DEAH box helicase | - |
| LCF43_RS21930 | 3098679..3098807 | - | 129 | WP_263639618.1 | hypothetical protein | - |
| LCF43_RS21935 | 3099281..3099691 | + | 411 | WP_129713335.1 | hypothetical protein | - |
| LCF43_RS14170 | 3100217..3100438 | + | 222 | Protein_2775 | hypothetical protein | - |
| LCF43_RS14175 | 3100467..3101357 | - | 891 | WP_225181188.1 | oxidoreductase | - |
| LCF43_RS14180 | 3101481..3102683 | - | 1203 | WP_225181189.1 | tyrosine--tRNA ligase | - |
| LCF43_RS14185 | 3103001..3103336 | + | 336 | WP_181847578.1 | gamma-glutamylcyclotransferase family protein | - |
| LCF43_RS14190 | 3103508..3103753 | - | 246 | WP_180777137.1 | YmjA family protein | - |
| LCF43_RS14195 | 3104210..3105187 | + | 978 | WP_180777138.1 | DUF1852 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|