MGE detailed information
MGE type: Genomic_island MGE length: 20029 bp
Accession: NZ_CP083990 Location: 3938654..3958682 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Accession: NZ_CP083990 Location: 3938654..3958682 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH23_RS19170 (3934133) | 3934133..3934636 | - | 504 | WP_072647342.1 | type 1 fimbria minor subunit FimG | - |
| LCH23_RS19175 (3934649) | 3934649..3935179 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| LCH23_RS19180 (3935189) | 3935189..3937825 | - | 2637 | WP_000121005.1 | fimbrial usher FimD | - |
| LCH23_RS19185 (3937892) | 3937892..3938617 | - | 726 | WP_000066547.1 | type 1 fimbria chaperone FimC | - |
| LCH23_RS19190 (3938654) | 3938654..3939193 | - | 540 | WP_000824114.1 | putative major fimbrial subunit LpfA | VF |
| LCH23_RS19195 (3939258) | 3939258..3939806 | - | 549 | WP_000695564.1 | Type-1 fimbrial protein, A chain | VF |
| LCH23_RS19200 (3940288) | 3940288..3940842 | - | 555 | WP_000983104.1 | Tyrosine recombinase XerD | VF |
| LCH23_RS19210 (3942138) | 3942138..3942740 | - | 603 | WP_000790583.1 | Tyrosine recombinase XerC | VF |
| LCH23_RS19215 (3944196) | 3944196..3944912 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| LCH23_RS19220 (3944932) | 3944932..3946038 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| LCH23_RS19225 (3946103) | 3946103..3947083 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| LCH23_RS19230 (3947193) | 3947193..3947398 | + | 206 | Protein_3779 | HNH endonuclease | - |
| LCH23_RS19235 (3947666) | 3947666..3948906 | - | 1241 | Protein_3780 | helicase YjhR | - |
| LCH23_RS19240 (3949022) | 3949022..3949153 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| LCH23_RS19245 (3949644) | 3949644..3949901 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| LCH23_RS19250 (3949913) | 3949913..3950458 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| LCH23_RS19255 (3950514) | 3950514..3951260 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| LCH23_RS19260 (3951429) | 3951429..3951647 | + | 219 | Protein_3785 | hypothetical protein | - |
| LCH23_RS19265 (3951685) | 3951685..3951801 | + | 117 | Protein_3786 | VOC family protein | - |
| LCH23_RS19270 (3952046) | 3952046..3953167 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| LCH23_RS19275 (3953164) | 3953164..3953442 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| LCH23_RS19280 (3953454) | 3953454..3954767 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| LCH23_RS19285 (3954780) | 3954780..3955586 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| LCH23_RS19290 (3955717) | 3955717..3956148 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| LCH23_RS19295 (3956160) | 3956160..3956792 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| LCH23_RS19300 (3956809) | 3956809..3957591 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| LCH23_RS19305 (3957894) | 3957894..3958682 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| LCH23_RS19310 (3958687) | 3958687..3959592 | + | 906 | WP_000714563.1 | dihydrodipicolinate synthase family protein | - |
| LCH23_RS19315 (3959603) | 3959603..3961570 | + | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| LCH23_RS19320 (3961677) | 3961677..3963026 | + | 1350 | WP_001128363.1 | GntP family permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|