MGE detailed information
MGE type: Prophage MGE length: 38814 bp
Accession: NZ_CP083990 Location: 3517106..3555919 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Accession: NZ_CP083990 Location: 3517106..3555919 Organism: Escherichia coli strain EC2648-Vir2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH23_RS17110 (3512949) | 3512949..3516023 | + | 3075 | WP_000177906.1 | beta-galactosidase | - |
| LCH23_RS17115 (3516075) | 3516075..3517049 | + | 975 | Protein_3365 | lactose permease | - |
| LCH23_RS17120 (3517106) | 3517106..3517803 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| LCH23_RS17125 (3517812) | 3517812..3517904 | + | 93 | Protein_3367 | sigma factor-binding protein Crl | - |
| LCH23_RS17130 (3517943) | 3517943..3518998 | - | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| LCH23_RS17135 (3519286) | 3519286..3520389 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LCH23_RS17140 (3520401) | 3520401..3521654 | + | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LCH23_RS17150 (3522226) | 3522226..3522567 | - | 342 | WP_000854672.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| LCH23_RS17155 (3522588) | 3522588..3522905 | - | 318 | WP_000070395.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| LCH23_RS17160 (3522924) | 3522924..3523145 | - | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| LCH23_RS17165 (3523154) | 3523154..3523630 | - | 477 | WP_000811693.1 | RadC family protein | - |
| LCH23_RS17170 (3523646) | 3523646..3524104 | - | 459 | WP_000211838.1 | antirestriction protein | - |
| LCH23_RS17175 (3524202) | 3524202..3524441 | - | 240 | WP_000194654.1 | DUF905 family protein | - |
| LCH23_RS17180 (3524518) | 3524518..3524985 | - | 468 | WP_001547765.1 | protein YkfB | - |
| LCH23_RS17185 (3525008) | 3525008..3525451 | - | 444 | WP_000824223.1 | lipoprotein YafY | - |
| LCH23_RS17190 (3525451) | 3525451..3525678 | - | 228 | WP_001548158.1 | protein YpjK | - |
| LCH23_RS17195 (3525674) | 3525674..3525865 | - | 192 | Protein_3380 | DeoR family transcriptional regulator | - |
| LCH23_RS17200 (3526082) | 3526082..3526903 | - | 822 | WP_000197389.1 | DUF932 domain-containing protein | - |
| LCH23_RS17205 (3526995) | 3526995..3527858 | - | 864 | WP_001065553.1 | GTPase family protein | - |
| LCH23_RS17210 (3528187) | 3528187..3529080 | - | 894 | WP_000770246.1 | LysR substrate-binding domain-containing protein | - |
| LCH23_RS17215 (3529176) | 3529176..3529433 | + | 258 | Protein_3384 | IS3 family transposase ISEc52 | Transposase |
| LCH23_RS17220 (3529501) | 3529501..3530652 | + | 1152 | WP_001254938.1 | IS30 family transposase IS30D | Transposase |
| LCH23_RS17225 (3530662) | 3530662..3531087 | + | 426 | Protein_3386 | IS3 family transposase | - |
| LCH23_RS17230 (3531760) | 3531760..3532851 | + | 1092 | Protein_3387 | reverse transcriptase domain-containing protein | - |
| LCH23_RS17235 (3532999) | 3532999..3533979 | - | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| LCH23_RS17240 (3534223) | 3534223..3535626 | + | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| LCH23_RS17245 (3535613) | 3535613..3536545 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| LCH23_RS17250 (3536654) | 3536654..3537700 | - | 1047 | WP_000192349.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| LCH23_RS17255 (3537712) | 3537712..3538059 | - | 348 | Protein_3392 | ABC transporter permease subunit | - |
| LCH23_RS17265 (3538829) | 3538829..3539002 | + | 174 | Protein_3394 | IS30 family transposase | - |
| LCH23_RS17270 (3539012) | 3539012..3539260 | - | 249 | Protein_3395 | IS3 family transposase ISEhe3 | Transposase |
| LCH23_RS17275 (3539283) | 3539283..3539633 | - | 351 | WP_001030800.1 | type IV toxin-antitoxin system antitoxin YagB | - |
| LCH23_RS17280 (3539647) | 3539647..3539712 | - | 66 | Protein_3397 | hypothetical protein | - |
| LCH23_RS17285 (3539727) | 3539727..3540881 | - | 1155 | WP_010723086.1 | IS481 family transposase ISEc19 | Transposase |
| LCH23_RS17290 (3541176) | 3541176..3542084 | + | 909 | WP_072647389.1 | 2-keto-3-deoxygluconate aldolase | - |
| LCH23_RS17295 (3542099) | 3542099..3544066 | + | 1968 | WP_000151261.1 | xylonate dehydratase YagF | - |
| LCH23_RS17300 (3544293) | 3544293..3545675 | + | 1383 | WP_000192863.1 | MFS transporter | - |
| LCH23_RS17305 (3545687) | 3545687..3547297 | + | 1611 | WP_000406871.1 | glycoside hydrolase family 43 protein | - |
| LCH23_RS17310 (3547302) | 3547302..3548060 | - | 759 | WP_001121657.1 | DNA-binding transcriptional repressor XynR | - |
| LCH23_RS17315 (3548199) | 3548199..3549203 | - | 1005 | WP_001281825.1 | Ornithine carbamoyltransferase subunit F | VF |
| LCH23_RS17320 (3549173) | 3549173..3549268 | - | 96 | WP_211180486.1 | putative translational regulatory protein ArgL | - |
| LCH23_RS17325 (3549327) | 3549327..3549530 | + | 204 | Protein_3406 | DUF3987 domain-containing protein | - |
| LCH23_RS17335 (3550398) | 3550398..3551129 | + | 732 | WP_000388269.1 | protein YagJ | - |
| LCH23_RS17340 (3551220) | 3551220..3551846 | - | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| LCH23_RS17345 (3552118) | 3552118..3552816 | - | 699 | WP_001214248.1 | recombinase family protein | - |
| LCH23_RS17350 (3552843) | 3552843..3553697 | - | 855 | WP_000072039.1 | protein YagM | - |
| LCH23_RS17355 (3553816) | 3553816..3554040 | - | 225 | WP_001272156.1 | helix-turn-helix domain-containing protein | - |
| LCH23_RS17360 (3554037) | 3554037..3554477 | - | 441 | WP_000224818.1 | protein YagN | - |
| LCH23_RS17365 (3554594) | 3554594..3555994 | - | 1401 | WP_001407714.1 | hypothetical protein ; Integrase | Integrase |
| LCH23_RS17370 (3556279) | 3556279..3556617 | - | 339 | Protein_3415 | LysR substrate-binding domain-containing protein | - |
| LCH23_RS17375 (3556668) | 3556668..3557624 | - | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LCH23_RS17380 (3557634) | 3557634..3559832 | - | 2199 | WP_000667026.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| LCH23_RS17385 (3559829) | 3559829..3560785 | - | 957 | WP_000643333.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|