MGE detailed information
MGE type: Prophage MGE length: 52698 bp
Accession: NZ_CP083888 Location: 4395831..4448528 Organism: Escherichia coli strain NDM1 Replicon: chromosome
Accession: NZ_CP083888 Location: 4395831..4448528 Organism: Escherichia coli strain NDM1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE25_RS21165 (4390904) | 4390904..4391320 | - | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| LCE25_RS21170 (4391431) | 4391431..4392144 | - | 714 | WP_001384961.1 | acid phosphatase AphA | - |
| LCE25_RS21175 (4392546) | 4392546..4392750 | + | 205 | Protein_4134 | hypothetical protein | - |
| LCE25_RS21180 (4392780) | 4392780..4393031 | + | 252 | WP_000275035.1 | hypothetical protein | - |
| LCE25_RS21185 (4393253) | 4393253..4394446 | - | 1194 | WP_000486964.1 | aromatic amino acid transaminase | - |
| LCE25_RS21190 (4394699) | 4394699..4395778 | - | 1080 | WP_001147328.1 | alanine racemase | - |
| LCE25_RS21195 (4395831) | 4395831..4397246 | - | 1416 | WP_097419736.1 | replicative DNA helicase | - |
| LCE25_RS21200 (4397329) | 4397329..4398312 | + | 984 | WP_000235516.1 | L-threonine 3-dehydrogenase | VF |
| LCE25_RS21205 (4398478) | 4398478..4398720 | - | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| LCE25_RS21210 (4398854) | 4398854..4399891 | - | 1038 | WP_000543828.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| LCE25_RS21215 (4399980) | 4399980..4401077 | + | 1098 | WP_021557428.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LCE25_RS21220 (4401139) | 4401139..4401387 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| LCE25_RS21225 (4401503) | 4401503..4401634 | - | 132 | Protein_4144 | tail fiber assembly protein | - |
| LCE25_RS21230 (4401686) | 4401686..4402507 | - | 822 | WP_224446609.1 | tail fiber domain-containing protein | - |
| LCE25_RS21235 (4403135) | 4403135..4404172 | - | 1038 | Protein_4146 | prophage tail fiber N-terminal domain-containing protein | - |
| LCE25_RS21240 (4404237) | 4404237..4404836 | - | 600 | WP_224446585.1 | hypothetical protein | VF |
| LCE25_RS21245 (4404904) | 4404904..4408602 | - | 3699 | WP_224446586.1 | phage tail protein | - |
| LCE25_RS21250 (4408669) | 4408669..4409007 | - | 339 | WP_001332187.1 | hypothetical protein | - |
| LCE25_RS21255 (4409080) | 4409080..4409652 | - | 573 | WP_239606237.1 | tail assembly protein | - |
| LCE25_RS21260 (4409649) | 4409649..4410392 | - | 744 | WP_224446587.1 | C40 family peptidase | - |
| LCE25_RS21265 (4410397) | 4410397..4411095 | - | 699 | WP_096998838.1 | phage minor tail protein L | - |
| LCE25_RS21270 (4411095) | 4411095..4411424 | - | 330 | WP_000847317.1 | phage tail protein | - |
| LCE25_RS21275 (4411421) | 4411421..4414495 | - | 3075 | WP_096951751.1 | phage tail tape measure protein | - |
| LCE25_RS21280 (4414467) | 4414467..4414796 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| LCE25_RS21285 (4414805) | 4414805..4415191 | - | 387 | WP_001300035.1 | phage minor tail protein G | - |
| LCE25_RS21290 (4415252) | 4415252..4415995 | - | 744 | WP_000211124.1 | phage tail protein | - |
| LCE25_RS21295 (4416006) | 4416006..4416407 | - | 402 | WP_001079410.1 | phage minor tail U family protein | - |
| LCE25_RS21300 (4416404) | 4416404..4416994 | - | 591 | WP_096998837.1 | phage tail protein | - |
| LCE25_RS21305 (4417006) | 4417006..4417281 | - | 276 | WP_089622495.1 | DNA breaking-rejoining protein | - |
| LCE25_RS21310 (4417274) | 4417274..4417597 | - | 324 | WP_001097050.1 | DUF2190 family protein | - |
| LCE25_RS21315 (4417684) | 4417684..4419711 | - | 2028 | WP_224446588.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| LCE25_RS21320 (4419656) | 4419656..4421236 | - | 1581 | WP_077625506.1 | phage portal protein | - |
| LCE25_RS21325 (4421164) | 4421164..4421376 | - | 213 | WP_001072975.1 | hypothetical protein | - |
| LCE25_RS21330 (4421373) | 4421373..4423475 | - | 2103 | WP_096998835.1 | phage terminase large subunit family protein | - |
| LCE25_RS21335 (4423475) | 4423475..4423966 | - | 492 | WP_000349509.1 | DUF1441 family protein | - |
| LCE25_RS21340 (4424324) | 4424324..4424506 | + | 183 | WP_204162886.1 | hypothetical protein | - |
| LCE25_RS21345 (4424474) | 4424474..4425022 | - | 549 | WP_058100756.1 | Rha family transcriptional regulator | - |
| LCE25_RS21350 (4425224) | 4425224..4425661 | - | 438 | WP_089519095.1 | lysis protein | - |
| LCE25_RS21355 (4425658) | 4425658..4426134 | - | 477 | WP_096932280.1 | glycoside hydrolase family protein | - |
| LCE25_RS21360 (4426138) | 4426138..4426473 | - | 336 | WP_001120502.1 | phage holin, lambda family | - |
| LCE25_RS21365 (4426550) | 4426550..4427602 | - | 1053 | WP_224446589.1 | site-specific DNA-methyltransferase | - |
| LCE25_RS21370 (4427753) | 4427753..4427956 | - | 204 | WP_000917724.1 | hypothetical protein | - |
| LCE25_RS21375 (4428180) | 4428180..4428605 | - | 426 | WP_000217632.1 | hypothetical protein | - |
| LCE25_RS21380 (4428886) | 4428886..4429638 | - | 753 | WP_001047105.1 | antitermination protein | - |
| LCE25_RS21385 (4429652) | 4429652..4430641 | - | 990 | WP_001360050.1 | DUF968 domain-containing protein | - |
| LCE25_RS21390 (4430649) | 4430649..4431458 | - | 810 | WP_001061379.1 | KilA-N domain-containing protein | - |
| LCE25_RS21395 (4431478) | 4431478..4431867 | - | 390 | WP_001402832.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LCE25_RS21400 (4431864) | 4431864..4432190 | - | 327 | WP_000210170.1 | LexA family transcriptional regulator | - |
| LCE25_RS21405 (4432187) | 4432187..4432840 | - | 654 | WP_049144297.1 | phage N-6-adenine-methyltransferase | - |
| LCE25_RS21410 (4432840) | 4432840..4433334 | - | 495 | WP_072108508.1 | PerC family transcriptional regulator | - |
| LCE25_RS21415 (4433331) | 4433331..4434149 | - | 819 | WP_024249647.1 | helix-turn-helix domain-containing protein | - |
| LCE25_RS21420 (4434146) | 4434146..4434370 | - | 225 | WP_000620696.1 | hypothetical protein | - |
| LCE25_RS21425 (4434367) | 4434367..4435257 | - | 891 | WP_224446590.1 | Rha family phage regulatory protein | - |
| LCE25_RS21430 (4435187) | 4435187..4435366 | - | 180 | WP_001341559.1 | DUF4222 domain-containing protein | - |
| LCE25_RS21435 (4435512) | 4435512..4436063 | - | 552 | WP_052970432.1 | protein YmfL | - |
| LCE25_RS21440 (4436056) | 4436056..4436316 | - | 261 | WP_001191669.1 | helix-turn-helix transcriptional regulator | - |
| LCE25_RS21445 (4436414) | 4436414..4437106 | + | 693 | WP_001345148.1 | helix-turn-helix transcriptional regulator | - |
| LCE25_RS21450 (4437809) | 4437809..4438171 | + | 363 | WP_000135680.1 | protein YfdP | - |
| LCE25_RS21455 (4438237) | 4438237..4439061 | + | 825 | WP_224446591.1 | DUF2303 family protein | - |
| LCE25_RS21460 (4439189) | 4439189..4439725 | + | 537 | WP_000008165.1 | 5'-deoxynucleotidase | - |
| LCE25_RS21465 (4439716) | 4439716..4440219 | + | 504 | WP_224446592.1 | ead/Ea22-like family protein | - |
| LCE25_RS21470 (4440221) | 4440221..4440412 | + | 192 | WP_021518174.1 | hypothetical protein | - |
| LCE25_RS21475 (4440414) | 4440414..4440962 | + | 549 | WP_114447249.1 | DUF551 domain-containing protein | - |
| LCE25_RS21480 (4440962) | 4440962..4441534 | + | 573 | WP_001061339.1 | 3'-5' exonuclease | - |
| LCE25_RS21485 (4441571) | 4441571..4441852 | + | 282 | WP_224446593.1 | pyocin activator PrtN family protein | - |
| LCE25_RS21490 (4441900) | 4441900..4442073 | - | 174 | WP_000390071.1 | hypothetical protein | - |
| LCE25_RS21495 (4442113) | 4442113..4442499 | - | 387 | WP_014640052.1 | hypothetical protein | Toxin Detail |
| LCE25_RS21500 (4442529) | 4442529..4443038 | - | 510 | WP_001339382.1 | Panacea domain-containing protein | Antitoxin Detail |
| LCE25_RS21505 (4443355) | 4443355..4443459 | - | 105 | Protein_4200 | tRNA-dihydrouridine synthase | - |
| LCE25_RS21510 (4443823) | 4443823..4444844 | - | 1022 | Protein_4201 | DUF2713 domain-containing protein | - |
| LCE25_RS21515 (4445162) | 4445162..4445677 | + | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| LCE25_RS21520 (4445719) | 4445719..4445928 | - | 210 | WP_001030593.1 | CsbD family protein | - |
| LCE25_RS21525 (4446044) | 4446044..4447369 | - | 1326 | WP_001295692.1 | MATE family efflux transporter DinF | - |
| LCE25_RS21530 (4447442) | 4447442..4448050 | - | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| LCE25_RS21535 (4448160) | 4448160..4448528 | - | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| LCE25_RS21540 (4448699) | 4448699..4451122 | + | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| LCE25_RS21545 (4451277) | 4451277..4452149 | - | 873 | WP_000455228.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| LCE25_RS21550 (4452162) | 4452162..4452659 | - | 498 | WP_001297295.1 | chorismate lyase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|