MGE detailed information
MGE type: Genomic_island MGE length: 20029 bp
Accession: NZ_CP083888 Location: 4081568..4101596 Organism: Escherichia coli strain NDM1 Replicon: chromosome
Accession: NZ_CP083888 Location: 4081568..4101596 Organism: Escherichia coli strain NDM1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE25_RS19625 (4077047) | 4077047..4077550 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| LCE25_RS19630 (4077563) | 4077563..4078093 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| LCE25_RS19635 (4078103) | 4078103..4080739 | - | 2637 | WP_000121002.1 | fimbrial usher FimD | - |
| LCE25_RS19640 (4080806) | 4080806..4081531 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| LCE25_RS19645 (4081568) | 4081568..4082107 | - | 540 | WP_000824114.1 | hypothetical protein | VF |
| LCE25_RS19650 (4082172) | 4082172..4082720 | - | 549 | WP_000695564.1 | hypothetical protein | VF |
| LCE25_RS19655 (4083202) | 4083202..4083798 | - | 597 | WP_000044711.1 | Tyrosine recombinase XerC | VF |
| LCE25_RS19660 (4084276) | 4084276..4084644 | - | 369 | Protein_3836 | type 1 fimbria switch DNA invertase FimB | - |
| LCE25_RS19665 (4084696) | 4084696..4085393 | + | 698 | WP_223216367.1 | IS1 family transposase | - |
| LCE25_RS19670 (4085409) | 4085409..4085654 | - | 246 | Protein_3838 | type 1 fimbria switch DNA invertase FimB | - |
| LCE25_RS19675 (4087110) | 4087110..4087826 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| LCE25_RS19680 (4087846) | 4087846..4088952 | + | 1107 | WP_023568191.1 | N-acetylneuraminate epimerase | - |
| LCE25_RS19685 (4089017) | 4089017..4089997 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| LCE25_RS19690 (4090107) | 4090107..4090312 | + | 206 | Protein_3842 | HNH endonuclease | - |
| LCE25_RS19695 (4090580) | 4090580..4091820 | - | 1241 | Protein_3843 | helicase YjhR | - |
| LCE25_RS19700 (4091936) | 4091936..4092067 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| LCE25_RS19705 (4092558) | 4092558..4092815 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| LCE25_RS19710 (4092827) | 4092827..4093372 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| LCE25_RS19715 (4093428) | 4093428..4094174 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| LCE25_RS19720 (4094343) | 4094343..4094561 | + | 219 | Protein_3848 | hypothetical protein | - |
| LCE25_RS19725 (4094599) | 4094599..4094715 | + | 117 | Protein_3849 | VOC family protein | - |
| LCE25_RS19730 (4094960) | 4094960..4096081 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| LCE25_RS19735 (4096078) | 4096078..4096356 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| LCE25_RS19740 (4096368) | 4096368..4097681 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| LCE25_RS19745 (4097694) | 4097694..4098500 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| LCE25_RS19750 (4098631) | 4098631..4099062 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| LCE25_RS19755 (4099074) | 4099074..4099706 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| LCE25_RS19760 (4099723) | 4099723..4100505 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| LCE25_RS19765 (4100808) | 4100808..4101596 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| LCE25_RS19770 (4101601) | 4101601..4102506 | + | 906 | WP_086611338.1 | dihydrodipicolinate synthase family protein | - |
| LCE25_RS19775 (4102517) | 4102517..4104484 | + | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| LCE25_RS19780 (4104591) | 4104591..4105940 | + | 1350 | WP_001128363.1 | GntP family permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|