MGE detailed information
MGE type: Prophage MGE length: 62674 bp
Accession: NZ_CP083880 Location: 3641582..3704255 Organism: Escherichia coli strain NDM3 Replicon: chromosome
Accession: NZ_CP083880 Location: 3641582..3704255 Organism: Escherichia coli strain NDM3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE26_RS17580 (3638893) | 3638893..3639765 | - | 873 | WP_001407301.1 | GTPase family protein | - |
| LCE26_RS17585 (3640029) | 3640029..3641585 | + | 1557 | WP_000200813.1 | type I restriction-modification system subunit M | - |
| LCE26_RS17590 (3641582) | 3641582..3642796 | + | 1215 | WP_042047042.1 | restriction endonuclease subunit S | - |
| LCE26_RS17595 (3642918) | 3642918..3646034 | + | 3117 | WP_020233940.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LCE26_RS17600 (3646182) | 3646182..3646976 | - | 795 | Protein_3439 | IS5 family transposase ISKpn26 | Transposase |
| LCE26_RS17605 (3647033) | 3647033..3648001 | - | 969 | WP_000654804.1 | IS5 family transposase IS903B | Transposase |
| LCE26_RS17610 (3648082) | 3648082..3648203 | - | 122 | Protein_3441 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LCE26_RS17615 (3648233) | 3648233..3648706 | + | 474 | WP_224180650.1 | phage tail protein | - |
| LCE26_RS17620 (3648709) | 3648709..3648942 | + | 234 | WP_001619155.1 | hypothetical protein | - |
| LCE26_RS17625 (3648923) | 3648923..3649333 | - | 411 | WP_001032316.1 | tail fiber assembly protein | - |
| LCE26_RS17630 (3650227) | 3650227..3652362 | - | 2136 | Protein_3445 | prophage tail fiber N-terminal domain-containing protein | - |
| LCE26_RS17635 (3652427) | 3652427..3653026 | - | 600 | WP_001233083.1 | hypothetical protein | VF |
| LCE26_RS17640 (3653097) | 3653097..3656594 | - | 3498 | WP_108084474.1 | host specificity protein J | - |
| LCE26_RS17645 (3656655) | 3656655..3657227 | - | 573 | WP_000847704.1 | tail assembly protein | - |
| LCE26_RS17650 (3657224) | 3657224..3657967 | - | 744 | WP_045154394.1 | C40 family peptidase | - |
| LCE26_RS17655 (3657973) | 3657973..3658671 | - | 699 | WP_001152639.1 | phage minor tail protein L | - |
| LCE26_RS17660 (3658671) | 3658671..3659000 | - | 330 | WP_000847379.1 | phage tail protein | - |
| LCE26_RS17665 (3658997) | 3658997..3661576 | - | 2580 | WP_021548553.1 | phage tail tape measure protein | - |
| LCE26_RS17670 (3661569) | 3661569..3662003 | - | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| LCE26_RS17675 (3661985) | 3661985..3662407 | - | 423 | WP_021548554.1 | phage minor tail protein G | - |
| LCE26_RS17680 (3662423) | 3662423..3663163 | - | 741 | WP_021548555.1 | phage tail protein | - |
| LCE26_RS17685 (3663171) | 3663171..3663566 | - | 396 | WP_021548556.1 | phage minor tail U family protein | - |
| LCE26_RS17690 (3663563) | 3663563..3664141 | - | 579 | WP_001518407.1 | phage tail protein | - |
| LCE26_RS17695 (3664153) | 3664153..3664506 | - | 354 | WP_029395143.1 | head-tail joining protein | - |
| LCE26_RS17700 (3664518) | 3664518..3664913 | - | 396 | WP_001468354.1 | DNA-packaging protein FI | - |
| LCE26_RS17705 (3664955) | 3664955..3665980 | - | 1026 | WP_029395141.1 | major capsid protein | - |
| LCE26_RS17710 (3666036) | 3666036..3666368 | - | 333 | WP_012304872.1 | head decoration protein | - |
| LCE26_RS17715 (3666378) | 3666378..3667697 | - | 1320 | WP_029395138.1 | S49 family peptidase | - |
| LCE26_RS17720 (3667678) | 3667678..3669279 | - | 1602 | WP_057077926.1 | phage portal protein | - |
| LCE26_RS17725 (3669276) | 3669276..3669482 | - | 207 | WP_000198149.1 | gpW family protein | - |
| LCE26_RS17730 (3669479) | 3669479..3671404 | - | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| LCE26_RS17735 (3671379) | 3671379..3671924 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LCE26_RS17740 (3672313) | 3672313..3672546 | + | 234 | WP_001663509.1 | YlcI/YnfO family protein | - |
| LCE26_RS17745 (3672603) | 3672603..3673013 | + | 411 | WP_000079508.1 | DUF1398 family protein | - |
| LCE26_RS17750 (3673364) | 3673364..3673516 | - | 153 | WP_001139678.1 | hypothetical protein | - |
| LCE26_RS17755 (3673504) | 3673504..3673941 | - | 438 | WP_001446997.1 | lysis protein | - |
| LCE26_RS17760 (3673938) | 3673938..3674414 | - | 477 | WP_060581801.1 | glycoside hydrolase family protein | - |
| LCE26_RS17765 (3674418) | 3674418..3674744 | - | 327 | WP_001120496.1 | phage holin, lambda family | - |
| LCE26_RS17770 (3675145) | 3675145..3675894 | + | 750 | WP_000907077.1 | TIGR04255 family protein | - |
| LCE26_RS17775 (3675910) | 3675910..3676254 | + | 345 | WP_125282403.1 | hypothetical protein | - |
| LCE26_RS17780 (3676258) | 3676258..3676872 | + | 615 | WP_000069422.1 | hypothetical protein | - |
| LCE26_RS17785 (3676898) | 3676898..3677242 | - | 345 | WP_001205456.1 | antiterminator Q family protein | - |
| LCE26_RS17790 (3677261) | 3677261..3678250 | - | 990 | WP_001433852.1 | DUF968 domain-containing protein | - |
| LCE26_RS17795 (3678258) | 3678258..3679055 | - | 798 | WP_060581690.1 | KilA-N domain-containing protein | - |
| LCE26_RS17800 (3679075) | 3679075..3679464 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LCE26_RS17805 (3679461) | 3679461..3679787 | - | 327 | WP_000210164.1 | LexA family transcriptional regulator | - |
| LCE26_RS17810 (3679784) | 3679784..3680437 | - | 654 | WP_060581688.1 | phage N-6-adenine-methyltransferase | - |
| LCE26_RS17815 (3680437) | 3680437..3680931 | - | 495 | WP_224434057.1 | PerC family transcriptional regulator | - |
| LCE26_RS17820 (3680928) | 3680928..3681869 | - | 942 | WP_000104977.1 | helix-turn-helix domain-containing protein | - |
| LCE26_RS17825 (3681859) | 3681859..3682038 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| LCE26_RS17830 (3682214) | 3682214..3682765 | - | 552 | WP_001434539.1 | protein YmfL | - |
| LCE26_RS17835 (3682803) | 3682803..3683003 | - | 201 | WP_000205494.1 | Cro/CI family transcriptional regulator | - |
| LCE26_RS17840 (3683101) | 3683101..3683727 | + | 627 | WP_000450735.1 | LexA family transcriptional regulator | - |
| LCE26_RS17845 (3683955) | 3683955..3684470 | - | 516 | WP_000559916.1 | hypothetical protein | - |
| LCE26_RS17850 (3684615) | 3684615..3684926 | + | 312 | Protein_3489 | hypothetical protein | - |
| LCE26_RS17855 (3684941) | 3684941..3685303 | + | 363 | WP_000135682.1 | protein YfdP | - |
| LCE26_RS17860 (3685369) | 3685369..3686193 | + | 825 | WP_057077927.1 | DUF2303 family protein | - |
| LCE26_RS17865 (3686321) | 3686321..3686857 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| LCE26_RS17870 (3686848) | 3686848..3687210 | + | 363 | WP_001242749.1 | phage protein | - |
| LCE26_RS17875 (3687210) | 3687210..3687515 | + | 306 | WP_000206734.1 | protein YfdT | - |
| LCE26_RS17880 (3687515) | 3687515..3687865 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| LCE26_RS17885 (3687787) | 3687787..3688905 | + | 1119 | WP_223350505.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LCE26_RS17895 (3689110) | 3689110..3690363 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LCE26_RS17900 (3690375) | 3690375..3691478 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LCE26_RS17905 (3691766) | 3691766..3692821 | + | 1056 | WP_000749867.1 | phosphoporin PhoE | - |
| LCE26_RS17910 (3692860) | 3692860..3693261 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3693979) | 3693979..3694059 | - | 81 | NuclAT_13 | - | - |
| - (3693979) | 3693979..3694059 | - | 81 | NuclAT_13 | - | - |
| - (3693979) | 3693979..3694059 | - | 81 | NuclAT_13 | - | - |
| - (3693979) | 3693979..3694059 | - | 81 | NuclAT_13 | - | - |
| LCE26_RS17915 (3693319) | 3693319..3694563 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| LCE26_RS17920 (3694655) | 3694655..3695113 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| LCE26_RS17925 (3695374) | 3695374..3696831 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| LCE26_RS17930 (3696888) | 3696888..3697409 | - | 522 | Protein_3504 | peptide chain release factor H | - |
| LCE26_RS17935 (3697405) | 3697405..3697611 | - | 207 | Protein_3505 | RtcB family protein | - |
| LCE26_RS17940 (3697929) | 3697929..3698381 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| LCE26_RS17945 (3698391) | 3698391..3698789 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LCE26_RS17950 (3698792) | 3698792..3699085 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LCE26_RS17955 (3699137) | 3699137..3700192 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| LCE26_RS17960 (3700263) | 3700263..3701048 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| LCE26_RS17965 (3701020) | 3701020..3702732 | + | 1713 | Protein_3511 | hypothetical protein | VF |
| LCE26_RS17970 (3702956) | 3702956..3703453 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| LCE26_RS17975 (3703629) | 3703629..3704378 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| LCE26_RS17980 (3704588) | 3704588..3704848 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| LCE26_RS17985 (3704851) | 3704851..3705129 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | - |
| LCE26_RS17990 (3705285) | 3705285..3706025 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LCE26_RS17995 (3705996) | 3705996..3706763 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| LCE26_RS18000 (3706969) | 3706969..3707547 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|