MGE detailed information
MGE type: Prophage MGE length: 74067 bp
Accession: NZ_CP083872 Location: 3602736..3676802 Organism: Escherichia coli strain NDM5 Replicon: chromosome
Accession: NZ_CP083872 Location: 3602736..3676802 Organism: Escherichia coli strain NDM5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE27_RS17385 (3598827) | 3598827..3599783 | + | 957 | WP_000121359.1 | molybdenum cofactor insertion chaperone PaoD | - |
| LCE27_RS17390 (3599834) | 3599834..3600172 | + | 339 | Protein_3397 | LysR substrate-binding domain-containing protein | - |
| LCE27_RS17395 (3600493) | 3600493..3600861 | - | 369 | WP_001094398.1 | TA system toxin CbtA family protein | - |
| LCE27_RS17400 (3600882) | 3600882..3601240 | - | 359 | Protein_3399 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| LCE27_RS17405 (3601291) | 3601291..3601935 | - | 645 | WP_000086755.1 | hypothetical protein | - |
| LCE27_RS17410 (3601954) | 3601954..3602175 | - | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| LCE27_RS17415 (3602244) | 3602244..3602720 | - | 477 | WP_001424026.1 | RadC family protein | - |
| LCE27_RS17420 (3602736) | 3602736..3603209 | - | 474 | WP_000855059.1 | antirestriction protein | - |
| LCE27_RS17425 (3603551) | 3603551..3604372 | - | 822 | WP_001234565.1 | DUF932 domain-containing protein | - |
| LCE27_RS17430 (3604473) | 3604473..3604681 | - | 209 | Protein_3405 | DUF905 domain-containing protein | - |
| LCE27_RS17435 (3604782) | 3604782..3605237 | - | 456 | WP_000581506.1 | IrmA family protein | - |
| LCE27_RS17440 (3605313) | 3605313..3607828 | - | 2516 | Protein_3407 | hypothetical protein | - |
| LCE27_RS17445 (3607949) | 3607949..3611068 | - | 3120 | WP_000820497.1 | autotransporter adhesin Ag43 | - |
| LCE27_RS17450 (3611440) | 3611440..3612312 | - | 873 | WP_001407301.1 | GTPase family protein | - |
| LCE27_RS17455 (3612576) | 3612576..3614132 | + | 1557 | WP_000200813.1 | type I restriction-modification system subunit M | - |
| LCE27_RS17460 (3614129) | 3614129..3615343 | + | 1215 | WP_042047042.1 | restriction endonuclease subunit S | - |
| LCE27_RS17465 (3615465) | 3615465..3618581 | + | 3117 | WP_020233940.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LCE27_RS17470 (3618729) | 3618729..3619523 | - | 795 | Protein_3413 | IS5 family transposase ISKpn26 | Transposase |
| LCE27_RS17475 (3619580) | 3619580..3620548 | - | 969 | WP_000654804.1 | IS5 family transposase IS903B | Transposase |
| LCE27_RS17480 (3620629) | 3620629..3620750 | - | 122 | Protein_3415 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LCE27_RS17485 (3620780) | 3620780..3621253 | + | 474 | WP_224180650.1 | phage tail protein | - |
| LCE27_RS17490 (3621256) | 3621256..3621489 | + | 234 | WP_001619155.1 | hypothetical protein | - |
| LCE27_RS17495 (3621470) | 3621470..3621880 | - | 411 | WP_001032316.1 | tail fiber assembly protein | - |
| LCE27_RS17500 (3622774) | 3622774..3624909 | - | 2136 | Protein_3419 | prophage tail fiber N-terminal domain-containing protein | - |
| LCE27_RS17505 (3624974) | 3624974..3625573 | - | 600 | WP_001233083.1 | hypothetical protein | VF |
| LCE27_RS17510 (3625644) | 3625644..3629141 | - | 3498 | WP_108084474.1 | host specificity protein J | - |
| LCE27_RS17515 (3629202) | 3629202..3629774 | - | 573 | WP_000847704.1 | tail assembly protein | - |
| LCE27_RS17520 (3629771) | 3629771..3630514 | - | 744 | WP_045154394.1 | C40 family peptidase | - |
| LCE27_RS17525 (3630520) | 3630520..3631218 | - | 699 | WP_001152639.1 | phage minor tail protein L | - |
| LCE27_RS17530 (3631218) | 3631218..3631547 | - | 330 | WP_000847379.1 | phage tail protein | - |
| LCE27_RS17535 (3631544) | 3631544..3634123 | - | 2580 | WP_021548553.1 | phage tail tape measure protein | - |
| LCE27_RS17540 (3634116) | 3634116..3634550 | - | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| LCE27_RS17545 (3634532) | 3634532..3634954 | - | 423 | WP_021548554.1 | phage minor tail protein G | - |
| LCE27_RS17550 (3634970) | 3634970..3635710 | - | 741 | WP_021548555.1 | phage tail protein | - |
| LCE27_RS17555 (3635718) | 3635718..3636113 | - | 396 | WP_021548556.1 | phage minor tail U family protein | - |
| LCE27_RS17560 (3636110) | 3636110..3636688 | - | 579 | WP_001518407.1 | phage tail protein | - |
| LCE27_RS17565 (3636700) | 3636700..3637053 | - | 354 | WP_029395143.1 | head-tail joining protein | - |
| LCE27_RS17570 (3637065) | 3637065..3637460 | - | 396 | WP_001468354.1 | DNA-packaging protein FI | - |
| LCE27_RS17575 (3637502) | 3637502..3638527 | - | 1026 | WP_029395141.1 | major capsid protein | - |
| LCE27_RS17580 (3638583) | 3638583..3638915 | - | 333 | WP_012304872.1 | head decoration protein | - |
| LCE27_RS17585 (3638925) | 3638925..3640244 | - | 1320 | WP_029395138.1 | S49 family peptidase | - |
| LCE27_RS17590 (3640225) | 3640225..3641826 | - | 1602 | WP_057077926.1 | phage portal protein | - |
| LCE27_RS17595 (3641823) | 3641823..3642029 | - | 207 | WP_000198149.1 | gpW family protein | - |
| LCE27_RS17600 (3642026) | 3642026..3643951 | - | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| LCE27_RS17605 (3643926) | 3643926..3644471 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LCE27_RS17610 (3644860) | 3644860..3645093 | + | 234 | WP_001663509.1 | YlcI/YnfO family protein | - |
| LCE27_RS17615 (3645150) | 3645150..3645560 | + | 411 | WP_000079508.1 | DUF1398 family protein | - |
| LCE27_RS17620 (3645911) | 3645911..3646063 | - | 153 | WP_001139678.1 | hypothetical protein | - |
| LCE27_RS17625 (3646051) | 3646051..3646488 | - | 438 | WP_001446997.1 | lysis protein | - |
| LCE27_RS17630 (3646485) | 3646485..3646961 | - | 477 | WP_060581801.1 | glycoside hydrolase family protein | - |
| LCE27_RS17635 (3646965) | 3646965..3647291 | - | 327 | WP_001120496.1 | phage holin, lambda family | - |
| LCE27_RS17640 (3647692) | 3647692..3648441 | + | 750 | WP_000907077.1 | TIGR04255 family protein | - |
| LCE27_RS17645 (3648457) | 3648457..3648801 | + | 345 | WP_125282403.1 | hypothetical protein | - |
| LCE27_RS17650 (3648805) | 3648805..3649419 | + | 615 | WP_000069422.1 | hypothetical protein | - |
| LCE27_RS17655 (3649445) | 3649445..3649789 | - | 345 | WP_001205456.1 | antiterminator Q family protein | - |
| LCE27_RS17660 (3649808) | 3649808..3650797 | - | 990 | WP_001433852.1 | DUF968 domain-containing protein | - |
| LCE27_RS17665 (3650805) | 3650805..3651602 | - | 798 | WP_060581690.1 | KilA-N domain-containing protein | - |
| LCE27_RS17670 (3651622) | 3651622..3652011 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LCE27_RS17675 (3652008) | 3652008..3652334 | - | 327 | WP_000210164.1 | LexA family transcriptional regulator | - |
| LCE27_RS17680 (3652331) | 3652331..3652984 | - | 654 | WP_060581688.1 | phage N-6-adenine-methyltransferase | - |
| LCE27_RS17685 (3652984) | 3652984..3653478 | - | 495 | WP_224434057.1 | PerC family transcriptional regulator | - |
| LCE27_RS17690 (3653475) | 3653475..3654416 | - | 942 | WP_000104977.1 | helix-turn-helix domain-containing protein | - |
| LCE27_RS17695 (3654406) | 3654406..3654585 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| LCE27_RS17700 (3654761) | 3654761..3655312 | - | 552 | WP_001434539.1 | protein YmfL | - |
| LCE27_RS17705 (3655350) | 3655350..3655550 | - | 201 | WP_000205494.1 | Cro/CI family transcriptional regulator | - |
| LCE27_RS17710 (3655648) | 3655648..3656274 | + | 627 | WP_000450735.1 | LexA family transcriptional regulator | - |
| LCE27_RS17715 (3656502) | 3656502..3657017 | - | 516 | WP_000559916.1 | hypothetical protein | - |
| LCE27_RS17720 (3657162) | 3657162..3657473 | + | 312 | Protein_3463 | hypothetical protein | - |
| LCE27_RS17725 (3657488) | 3657488..3657850 | + | 363 | WP_000135682.1 | protein YfdP | - |
| LCE27_RS17730 (3657916) | 3657916..3658740 | + | 825 | WP_057077927.1 | DUF2303 family protein | - |
| LCE27_RS17735 (3658868) | 3658868..3659404 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| LCE27_RS17740 (3659395) | 3659395..3659757 | + | 363 | WP_001242749.1 | phage protein | - |
| LCE27_RS17745 (3659757) | 3659757..3660062 | + | 306 | WP_000206734.1 | protein YfdT | - |
| LCE27_RS17750 (3659978) | 3659978..3660412 | + | 435 | WP_077873866.1 | helix-turn-helix domain-containing protein | - |
| LCE27_RS17755 (3660334) | 3660334..3661452 | + | 1119 | WP_223350505.1 | hypothetical protein ; Integrase | Integrase |
| LCE27_RS17765 (3661657) | 3661657..3662910 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| LCE27_RS17770 (3662922) | 3662922..3664025 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| LCE27_RS17775 (3664313) | 3664313..3665368 | + | 1056 | WP_000749867.1 | phosphoporin PhoE | - |
| LCE27_RS17780 (3665407) | 3665407..3665808 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3666526) | 3666526..3666606 | - | 81 | NuclAT_15 | - | - |
| - (3666526) | 3666526..3666606 | - | 81 | NuclAT_15 | - | - |
| - (3666526) | 3666526..3666606 | - | 81 | NuclAT_15 | - | - |
| - (3666526) | 3666526..3666606 | - | 81 | NuclAT_15 | - | - |
| LCE27_RS17785 (3665866) | 3665866..3667110 | - | 1245 | WP_000189532.1 | esterase FrsA | - |
| LCE27_RS17790 (3667202) | 3667202..3667660 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| LCE27_RS17795 (3667921) | 3667921..3669378 | + | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| LCE27_RS17800 (3669435) | 3669435..3669956 | - | 522 | Protein_3478 | peptide chain release factor H | - |
| LCE27_RS17805 (3669952) | 3669952..3670158 | - | 207 | Protein_3479 | RtcB family protein | - |
| LCE27_RS17810 (3670476) | 3670476..3670928 | - | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| LCE27_RS17815 (3670938) | 3670938..3671336 | - | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LCE27_RS17820 (3671339) | 3671339..3671632 | - | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LCE27_RS17825 (3671684) | 3671684..3672739 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| LCE27_RS17830 (3672810) | 3672810..3673595 | - | 786 | WP_000207552.1 | hypothetical protein | VF |
| LCE27_RS17835 (3673567) | 3673567..3675279 | + | 1713 | Protein_3485 | hypothetical protein | VF |
| LCE27_RS17840 (3675503) | 3675503..3676000 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| LCE27_RS17845 (3676176) | 3676176..3676925 | - | 750 | WP_000056849.1 | hypothetical protein | VF |
| LCE27_RS17850 (3677135) | 3677135..3677395 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| LCE27_RS17855 (3677398) | 3677398..3677676 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | - |
| LCE27_RS17860 (3677832) | 3677832..3678572 | + | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LCE27_RS17865 (3678543) | 3678543..3679310 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| LCE27_RS17870 (3679516) | 3679516..3680094 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|