MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 125776 bp
Accession: NZ_CP083653 Location: 1..125776 Organism: Citrobacter amalonaticus strain FDAARGOS_1489 Replicon: plasmid unnamed2
Accession: NZ_CP083653 Location: 1..125776 Organism: Citrobacter amalonaticus strain FDAARGOS_1489 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA348_RS23680 (LA348_23680) | 549..2981 | - | 2433 | WP_212807623.1 | molybdopterin-dependent oxidoreductase | - |
| LA348_RS23685 (LA348_23685) | 3056..4111 | - | 1056 | WP_141227218.1 | IS630 family transposase ISPlu8 | Transposase |
| LA348_RS23690 (LA348_23690) | 4346..5104 | + | 759 | WP_121572306.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| LA348_RS23695 (LA348_23695) | 5157..6356 | + | 1200 | WP_224267616.1 | MFS transporter | - |
| LA348_RS23700 (LA348_23700) | 6521..6841 | + | 321 | Protein_5 | excinuclease ABC subunit A | - |
| LA348_RS23705 (LA348_23705) | 6949..8124 | + | 1176 | WP_224267617.1 | MFS transporter | - |
| LA348_RS23710 (LA348_23710) | 8245..8865 | + | 621 | WP_121572307.1 | DUF1349 domain-containing protein | - |
| LA348_RS23715 (LA348_23715) | 8979..10097 | + | 1119 | WP_121572308.1 | NADH:flavin oxidoreductase/NADH oxidase | - |
| LA348_RS23720 (LA348_23720) | 10667..10855 | - | 189 | WP_121572309.1 | hypothetical protein | - |
| LA348_RS23725 (LA348_23725) | 11142..11723 | + | 582 | WP_224267618.1 | hypothetical protein | - |
| LA348_RS23730 (LA348_23730) | 11880..12833 | + | 954 | WP_141227216.1 | hypothetical protein | - |
| LA348_RS23735 (LA348_23735) | 13148..14311 | - | 1164 | WP_141227215.1 | HNH endonuclease signature motif containing protein | - |
| LA348_RS23740 (LA348_23740) | 14589..15083 | + | 495 | WP_141227214.1 | thermonuclease family protein | - |
| LA348_RS23745 (LA348_23745) | 15076..15690 | + | 615 | WP_224267619.1 | hypothetical protein | - |
| LA348_RS23750 (LA348_23750) | 16117..16887 | + | 771 | WP_141227213.1 | TraX family protein | - |
| LA348_RS23755 (LA348_23755) | 16929..19106 | - | 2178 | WP_001567324.1 | peptidase domain-containing ABC transporter | - |
| LA348_RS23760 (LA348_23760) | 19106..20359 | - | 1254 | WP_001567323.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| LA348_RS24375 | 20362..20652 | - | 291 | WP_227641047.1 | CPBP family intramembrane metalloprotease | - |
| LA348_RS23770 (LA348_23770) | 21736..22092 | - | 357 | Protein_19 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LA348_RS23775 (LA348_23775) | 22120..23604 | + | 1485 | Protein_20 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| LA348_RS23780 (LA348_23780) | 24519..25532 | - | 1014 | WP_141227212.1 | plasmid replication initiator RepA | - |
| LA348_RS23785 (LA348_23785) | 26113..26901 | - | 789 | WP_141227211.1 | DsbA family protein | - |
| LA348_RS23790 (LA348_23790) | 26930..32353 | - | 5424 | WP_212807621.1 | Multifunctional conjugation protein TraI | Relaxase |
| LA348_RS23795 (LA348_23795) | 32350..34905 | - | 2556 | WP_212807619.1 | type IV conjugative transfer system coupling protein TraD | - |
| LA348_RS23800 (LA348_23800) | 35537..36268 | - | 732 | WP_141227209.1 | conjugal transfer complement resistance protein TraT | - |
| LA348_RS23805 (LA348_23805) | 36417..37130 | - | 714 | WP_141227208.1 | hypothetical protein | - |
| LA348_RS23810 (LA348_23810) | 37139..40144 | - | 3006 | WP_141227207.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LA348_RS23815 (LA348_23815) | 40144..41508 | - | 1365 | WP_141227206.1 | conjugal transfer pilus assembly protein TraH | - |
| LA348_RS23820 (LA348_23820) | 41501..41770 | - | 270 | WP_141227205.1 | hypothetical protein | - |
| LA348_RS23825 (LA348_23825) | 41890..42495 | - | 606 | WP_141227204.1 | F-type conjugal transfer protein TrbB | - |
| LA348_RS23830 (LA348_23830) | 42485..42703 | - | 219 | WP_141227203.1 | hypothetical protein | - |
| LA348_RS23835 (LA348_23835) | 42693..43181 | - | 489 | WP_141227202.1 | hypothetical protein | - |
| LA348_RS23840 (LA348_23840) | 43191..43970 | - | 780 | WP_141227242.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LA348_RS23845 (LA348_23845) | 43970..45808 | - | 1839 | WP_141227201.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LA348_RS23850 (LA348_23850) | 45805..46425 | - | 621 | WP_141227200.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LA348_RS23855 (LA348_23855) | 46435..47373 | - | 939 | WP_249413431.1 | conjugal transfer pilus assembly protein TraU | - |
| LA348_RS23860 (LA348_23860) | 47430..47753 | - | 324 | WP_141227198.1 | hypothetical protein | - |
| LA348_RS23865 (LA348_23865) | 47817..48038 | - | 222 | WP_141227197.1 | hypothetical protein | - |
| LA348_RS23870 (LA348_23870) | 48141..49169 | - | 1029 | WP_141227196.1 | hypothetical protein | - |
| LA348_RS23875 (LA348_23875) | 49160..49453 | - | 294 | WP_141227195.1 | hypothetical protein | - |
| LA348_RS23880 (LA348_23880) | 49450..50085 | - | 636 | WP_141227194.1 | type-F conjugative transfer system protein TraW | - |
| LA348_RS23885 (LA348_23885) | 50082..50498 | - | 417 | WP_141227193.1 | type-F conjugative transfer system protein TrbI | - |
| LA348_RS23890 (LA348_23890) | 50495..53095 | - | 2601 | WP_141227192.1 | type IV secretion system protein TraC | - |
| LA348_RS23895 (LA348_23895) | 53092..53289 | - | 198 | WP_141227191.1 | hypothetical protein | - |
| LA348_RS23900 (LA348_23900) | 53286..53840 | - | 555 | WP_141227190.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LA348_RS23905 (LA348_23905) | 53912..54334 | - | 423 | WP_141227189.1 | hypothetical protein | - |
| LA348_RS23910 (LA348_23910) | 54518..55927 | - | 1410 | WP_141227188.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LA348_RS23915 (LA348_23915) | 55924..56664 | - | 741 | WP_141227187.1 | type-F conjugative transfer system secretin TraK | - |
| LA348_RS23920 (LA348_23920) | 56676..57260 | - | 585 | WP_141227186.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| LA348_RS23925 (LA348_23925) | 57266..57568 | - | 303 | WP_141227185.1 | type IV conjugative transfer system protein TraL | - |
| LA348_RS23930 (LA348_23930) | 57572..57925 | - | 354 | WP_141227184.1 | type IV conjugative transfer system pilin TraA | - |
| LA348_RS23935 (LA348_23935) | 58124..58765 | + | 642 | WP_141227183.1 | Arc family DNA-binding protein | - |
| LA348_RS23940 (LA348_23940) | 58798..59193 | - | 396 | WP_141227182.1 | conjugal transfer protein | - |
| LA348_RS23945 (LA348_23945) | 59767..60306 | + | 540 | WP_141227181.1 | hypothetical protein | VF |
| LA348_RS23950 (LA348_23950) | 60335..61156 | - | 822 | WP_141227180.1 | DUF932 domain-containing protein | - |
| LA348_RS23955 (LA348_23955) | 61173..61466 | - | 294 | WP_071580395.1 | hypothetical protein | - |
| LA348_RS23960 (LA348_23960) | 62158..62493 | - | 336 | WP_141227240.1 | hypothetical protein | - |
| LA348_RS23965 (LA348_23965) | 62537..63328 | - | 792 | WP_141227239.1 | N-6 DNA methylase | - |
| LA348_RS23970 (LA348_23970) | 63369..63515 | - | 147 | WP_047353114.1 | hypothetical protein | - |
| LA348_RS23975 (LA348_23975) | 63664..63822 | - | 159 | WP_224267620.1 | hypothetical protein | - |
| LA348_RS23980 (LA348_23980) | 63932..64246 | - | 315 | WP_141227237.1 | hypothetical protein | - |
| LA348_RS23985 (LA348_23985) | 64876..65361 | + | 486 | WP_141227236.1 | cytoplasmic protein | - |
| LA348_RS23990 (LA348_23990) | 65627..65752 | - | 126 | WP_223540704.1 | type I toxin-antitoxin system Hok family toxin | - |
| LA348_RS23995 (LA348_23995) | 65703..65843 | - | 141 | WP_224267613.1 | DUF5431 family protein | - |
| LA348_RS24000 (LA348_24000) | 66019..66213 | - | 195 | WP_141227246.1 | hypothetical protein | - |
| LA348_RS24005 (LA348_24005) | 66255..66485 | - | 231 | WP_102889948.1 | hypothetical protein | - |
| LA348_RS24010 (LA348_24010) | 66482..67213 | - | 732 | WP_141227235.1 | plasmid SOS inhibition protein A | - |
| LA348_RS24015 (LA348_24015) | 67210..67644 | - | 435 | WP_141227234.1 | conjugation system SOS inhibitor PsiB | - |
| LA348_RS24020 (LA348_24020) | 67682..69694 | - | 2013 | WP_141227233.1 | ParB/RepB/Spo0J family partition protein | - |
| LA348_RS24025 (LA348_24025) | 69762..70127 | - | 366 | WP_141227232.1 | hypothetical protein | - |
| LA348_RS24030 (LA348_24030) | 70171..70443 | - | 273 | WP_141227231.1 | hypothetical protein | - |
| LA348_RS24380 | 70946..71080 | - | 135 | WP_263440520.1 | hypothetical protein | - |
| LA348_RS24035 (LA348_24035) | 71264..71460 | - | 197 | Protein_73 | hypothetical protein | - |
| LA348_RS24040 (LA348_24040) | 71503..71931 | - | 429 | WP_039265203.1 | antirestriction protein | - |
| LA348_RS24045 (LA348_24045) | 72288..72710 | - | 423 | WP_141227230.1 | DUF1380 family protein | - |
| LA348_RS24050 (LA348_24050) | 72767..72988 | - | 222 | WP_141227229.1 | hypothetical protein | - |
| LA348_RS24055 (LA348_24055) | 72985..73677 | - | 693 | WP_039265206.1 | DNA methylase | - |
| LA348_RS24060 (LA348_24060) | 74074..74541 | - | 468 | WP_039265207.1 | hypothetical protein | - |
| LA348_RS24065 (LA348_24065) | 74925..75128 | - | 204 | WP_039265208.1 | hypothetical protein | - |
| LA348_RS24070 (LA348_24070) | 75157..75420 | - | 264 | WP_039265209.1 | hypothetical protein | - |
| LA348_RS24075 (LA348_24075) | 75424..76089 | - | 666 | WP_039265210.1 | plasmid partitioning/stability family protein | - |
| LA348_RS24080 (LA348_24080) | 76092..77063 | - | 972 | WP_084635667.1 | plasmid segregation protein ParM | - |
| LA348_RS24085 (LA348_24085) | 77295..77726 | + | 432 | WP_039265212.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LA348_RS24090 (LA348_24090) | 77726..78997 | + | 1272 | WP_039265213.1 | Y-family DNA polymerase | - |
| LA348_RS24095 (LA348_24095) | 79441..80196 | + | 756 | WP_039265214.1 | replication initiation protein RepE | - |
| LA348_RS24100 (LA348_24100) | 80471..81823 | - | 1353 | WP_039265215.1 | hypothetical protein | - |
| LA348_RS24105 (LA348_24105) | 82097..82723 | + | 627 | WP_039265216.1 | ParA family plasmid-partitioning AAA ATPase | - |
| LA348_RS24110 (LA348_24110) | 82720..83022 | + | 303 | WP_039265217.1 | hypothetical protein | - |
| LA348_RS24115 (LA348_24115) | 83293..84440 | - | 1148 | Protein_89 | IS3 family transposase ISEhe3 | Transposase |
| LA348_RS24120 (LA348_24120) | 84633..84950 | + | 318 | WP_141227228.1 | hypothetical protein | - |
| LA348_RS24125 (LA348_24125) | 85179..85976 | - | 798 | WP_039265229.1 | hypothetical protein | - |
| LA348_RS24130 (LA348_24130) | 86463..86702 | + | 240 | WP_141227227.1 | hypothetical protein | - |
| LA348_RS24135 (LA348_24135) | 86783..87313 | - | 531 | WP_039265231.1 | hypothetical protein | - |
| LA348_RS24140 (LA348_24140) | 87648..88427 | - | 780 | WP_141227226.1 | site-specific integrase | - |
| LA348_RS24145 (LA348_24145) | 88424..88990 | - | 567 | WP_141227225.1 | hypothetical protein | - |
| LA348_RS24150 (LA348_24150) | 89053..89415 | - | 363 | WP_039265233.1 | hypothetical protein | - |
| LA348_RS24155 (LA348_24155) | 90025..90963 | + | 939 | WP_121572283.1 | hypothetical protein | - |
| LA348_RS24160 (LA348_24160) | 91011..92036 | - | 1026 | WP_121572284.1 | hypothetical protein | - |
| LA348_RS24165 (LA348_24165) | 92310..92540 | + | 231 | WP_121572285.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LA348_RS24170 (LA348_24170) | 92537..92953 | + | 417 | WP_121572286.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LA348_RS24175 (LA348_24175) | 93099..94169 | - | 1071 | WP_141227224.1 | hypothetical protein | - |
| LA348_RS24180 (LA348_24180) | 94960..95589 | - | 630 | WP_063136851.1 | DUF1349 domain-containing protein | - |
| LA348_RS24185 (LA348_24185) | 95671..96852 | - | 1182 | WP_141227223.1 | MFS transporter | - |
| LA348_RS24190 (LA348_24190) | 96886..97644 | - | 759 | WP_047732337.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| LA348_RS24195 (LA348_24195) | 98065..99243 | + | 1179 | WP_121572350.1 | MFS transporter | - |
| LA348_RS24200 (LA348_24200) | 99730..100683 | + | 954 | WP_161556283.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LA348_RS24205 (LA348_24205) | 100699..101292 | + | 594 | WP_141227222.1 | hypothetical protein | - |
| LA348_RS24210 (LA348_24210) | 101309..101845 | - | 537 | WP_121572291.1 | hypothetical protein | - |
| LA348_RS24215 (LA348_24215) | 101954..102124 | - | 171 | WP_224267614.1 | hypothetical protein | - |
| LA348_RS24220 (LA348_24220) | 102334..103836 | + | 1503 | WP_141227221.1 | IS21 family transposase ISAs29 | Transposase |
| LA348_RS24225 (LA348_24225) | 103853..104596 | + | 744 | Protein_111 | IS21 family transposase ISAs29 | Transposase |
| LA348_RS24230 (LA348_24230) | 105054..105275 | - | 222 | Protein_112 | transposase | - |
| LA348_RS24235 (LA348_24235) | 105436..106272 | - | 837 | WP_121572293.1 | PRD domain-containing protein | - |
| LA348_RS24240 (LA348_24240) | 106294..107757 | - | 1464 | WP_047732321.1 | family 1 glycosylhydrolase | - |
| LA348_RS24245 (LA348_24245) | 107757..109568 | - | 1812 | WP_047732316.1 | beta-glucoside-specific PTS transporter subunit IIABC | - |
| LA348_RS24250 (LA348_24250) | 109809..109883 | + | 75 | Protein_116 | hypothetical protein | - |
| LA348_RS24255 (LA348_24255) | 110022..110303 | - | 282 | WP_201506619.1 | IS91 family transposase ISVsa9 | Transposase |
| LA348_RS24260 (LA348_24260) | 110334..110656 | - | 323 | Protein_118 | IS3 family transposase IS911 | Transposase |
| LA348_RS24265 (LA348_24265) | 110718..111275 | + | 558 | WP_224267615.1 | IS91 family transposase ISVa3 | Transposase |
| LA348_RS24270 (LA348_24270) | 111403..112230 | + | 828 | WP_212807625.1 | hypothetical protein | - |
| LA348_RS24275 (LA348_24275) | 112488..114530 | - | 2043 | WP_121572294.1 | hypothetical protein | - |
| LA348_RS24280 (LA348_24280) | 115242..115499 | + | 258 | WP_077258044.1 | DUF2767 family protein | - |
| LA348_RS24285 (LA348_24285) | 115752..115871 | - | 120 | WP_229690214.1 | Hok/Gef family protein | - |
| LA348_RS24290 (LA348_24290) | 115822..115932 | - | 111 | Protein_124 | FlmC family protein | - |
| LA348_RS24295 (LA348_24295) | 116828..118264 | + | 1437 | WP_121572296.1 | aldehyde dehydrogenase family protein | - |
| LA348_RS24300 (LA348_24300) | 118368..119105 | - | 738 | Protein_126 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| LA348_RS24305 (LA348_24305) | 119149..119436 | - | 288 | Protein_127 | DUF4158 domain-containing protein | - |
| LA348_RS24310 (LA348_24310) | 119604..120239 | + | 636 | WP_047732266.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LA348_RS24315 (LA348_24315) | 120267..121103 | - | 837 | WP_047732446.1 | S-formylglutathione hydrolase | - |
| LA348_RS24320 (LA348_24320) | 121169..121567 | - | 399 | WP_008813494.1 | VOC family protein | - |
| LA348_RS24325 (LA348_24325) | 121609..122718 | - | 1110 | WP_121572298.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| LA348_RS24330 (LA348_24330) | 122753..123028 | - | 276 | WP_121572299.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| LA348_RS24335 (LA348_24335) | 123295..123444 | + | 150 | WP_161556284.1 | IS3 family transposase ISSod2 | Transposase |
| LA348_RS24340 (LA348_24340) | 123753..124256 | - | 504 | WP_224267622.1 | ferredoxin-type protein NapF | - |
| LA348_RS24345 (LA348_24345) | 124286..124882 | - | 597 | WP_121572301.1 | molecular chaperone | - |
| LA348_RS24350 (LA348_24350) | 124919..125692 | - | 774 | WP_121572302.1 | dimethyl sulfoxide reductase anchor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|