MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP083610 Location: 3708214..3729920 Organism: Escherichia coli strain EC2648-Vir1 Replicon: chromosome
Accession: NZ_CP083610 Location: 3708214..3729920 Organism: Escherichia coli strain EC2648-Vir1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LAJ48_RS17830 (3703465) | 3703465..3704175 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LAJ48_RS17835 (3704178) | 3704178..3704738 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LAJ48_RS17840 (3704773) | 3704773..3705114 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LAJ48_RS17845 (3705249) | 3705249..3705575 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LAJ48_RS17850 (3705781) | 3705781..3706995 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LAJ48_RS17855 (3707007) | 3707007..3708026 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LAJ48_RS17860 (3708214) | 3708214..3709371 | - | 1158 | Protein_3490 | tyrosine-type recombinase/integrase | - |
| LAJ48_RS17865 (3709385) | 3709385..3710080 | - | 696 | Protein_3491 | IS3-like element IS2 family transposase | - |
| LAJ48_RS17870 (3710077) | 3710077..3710844 | - | 768 | Protein_3492 | exonuclease | - |
| LAJ48_RS17875 (3710937) | 3710937..3711128 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LAJ48_RS17880 (3711125) | 3711125..3711313 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LAJ48_RS17885 (3711881) | 3711881..3712099 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LAJ48_RS23885 (3712129) | 3712129..3712257 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LAJ48_RS17890 (3712259) | 3712259..3712414 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LAJ48_RS17895 (3712581) | 3712581..3712988 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LAJ48_RS17900 (3713072) | 3713072..3713302 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LAJ48_RS17905 (3713286) | 3713286..3713564 | + | 279 | Protein_3500 | protein YdfX | - |
| LAJ48_RS17910 (3713599) | 3713599..3713748 | + | 150 | WP_011443592.1 | protein YdfW | - |
| LAJ48_RS17915 (3714185) | 3714185..3714517 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LAJ48_RS17920 (3714720) | 3714720..3715025 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LAJ48_RS17925 (3715050) | 3715050..3715289 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LAJ48_RS17930 (3715289) | 3715289..3715576 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LAJ48_RS17935 (3715648) | 3715648..3715803 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LAJ48_RS17940 (3716020) | 3716020..3716271 | + | 252 | WP_000980994.1 | protein Rem | - |
| LAJ48_RS17945 (3716338) | 3716338..3716616 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LAJ48_RS17950 (3716618) | 3716618..3717667 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LAJ48_RS17955 (3717681) | 3717681..3718433 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LAJ48_RS17960 (3718711) | 3718711..3718800 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LAJ48_RS17965 (3718855) | 3718855..3719067 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LAJ48_RS17970 (3719368) | 3719368..3719583 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LAJ48_RS17975 (3719947) | 3719947..3720117 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LAJ48_RS17980 (3720337) | 3720337..3720552 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LAJ48_RS17985 (3720557) | 3720557..3720868 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LAJ48_RS17990 (3720865) | 3720865..3721398 | + | 534 | WP_001092971.1 | lysozyme | - |
| LAJ48_RS17995 (3721395) | 3721395..3721892 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LAJ48_RS18000 (3722255) | 3722255..3722467 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LAJ48_RS18005 (3722478) | 3722478..3722666 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LAJ48_RS18010 (3722669) | 3722669..3722734 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LAJ48_RS18015 (3722813) | 3722813..3722968 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LAJ48_RS18020 (3723140) | 3723140..3723313 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LAJ48_RS18025 (3723465) | 3723465..3723875 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LAJ48_RS18030 (3723933) | 3723933..3724166 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LAJ48_RS18035 (3724555) | 3724555..3725124 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LAJ48_RS18040 (3725075) | 3725075..3726037 | + | 963 | WP_001027733.1 | phage tail protein | - |
| LAJ48_RS18045 (3726037) | 3726037..3726612 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LAJ48_RS18050 (3726710) | 3726710..3727300 | - | 591 | WP_000078177.1 | recombinase family protein | - |
| LAJ48_RS18055 (3727617) | 3727617..3727850 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LAJ48_RS18060 (3727919) | 3727919..3728032 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LAJ48_RS18065 (3728553) | 3728553..3729920 | + | 1368 | Protein_3532 | MHS family MFS transporter | - |
| LAJ48_RS18070 (3730009) | 3730009..3731469 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LAJ48_RS18075 (3731504) | 3731504..3731707 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LAJ48_RS18080 (3731884) | 3731884..3732570 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LAJ48_RS18085 (3732659) | 3732659..3733405 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |