MGE detailed information
MGE type: Prophage MGE length: 52963 bp
Accession: NZ_CP083585 Location: 2261899..2314861 Organism: Escherichia coli strain ECNB21-M121 Replicon: chromosome
Accession: NZ_CP083585 Location: 2261899..2314861 Organism: Escherichia coli strain ECNB21-M121 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA372_RS10890 (2258149) | 2258149..2260575 | - | 2427 | WP_047624848.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LA372_RS10895 (2260773) | 2260773..2261078 | - | 306 | WP_045176781.1 | DUF1161 domain-containing protein | - |
| LA372_RS10900 (2261186) | 2261186..2261896 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LA372_RS10905 (2261899) | 2261899..2262459 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| LA372_RS10910 (2262494) | 2262494..2262835 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| LA372_RS10915 (2262970) | 2262970..2263296 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LA372_RS10920 (2263502) | 2263502..2264716 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LA372_RS10925 (2264728) | 2264728..2265747 | + | 1020 | WP_000836042.1 | Zn-dependent oxidoreductase | - |
| LA372_RS10930 (2265935) | 2265935..2267215 | - | 1281 | WP_000877000.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LA372_RS10935 (2267250) | 2267250..2267501 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| LA372_RS10940 (2267574) | 2267574..2270045 | - | 2472 | WP_000048327.1 | exonuclease | - |
| LA372_RS10945 (2270138) | 2270138..2270329 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LA372_RS10950 (2270326) | 2270326..2270514 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LA372_RS10955 (2271082) | 2271082..2271300 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LA372_RS25715 (2271330) | 2271330..2271458 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LA372_RS10960 (2271460) | 2271460..2271615 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LA372_RS10965 (2271782) | 2271782..2272189 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LA372_RS10970 (2272273) | 2272273..2272503 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LA372_RS10975 (2272487) | 2272487..2273008 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| LA372_RS10980 (2272989) | 2272989..2273954 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| LA372_RS10985 (2273995) | 2273995..2274417 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| LA372_RS10990 (2274414) | 2274414..2274903 | + | 490 | Protein_2149 | class I SAM-dependent methyltransferase | - |
| LA372_RS10995 (2275381) | 2275381..2275802 | + | 422 | Protein_2150 | hypothetical protein | - |
| LA372_RS11000 (2276458) | 2276458..2277528 | + | 1071 | Protein_2151 | ISNCY family transposase ISCARN112 | Transposase |
| LA372_RS11005 (2277601) | 2277601..2277750 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| LA372_RS11010 (2278187) | 2278187..2278519 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LA372_RS11015 (2278722) | 2278722..2279027 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LA372_RS11020 (2279052) | 2279052..2279291 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LA372_RS11025 (2279291) | 2279291..2279578 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LA372_RS11030 (2279650) | 2279650..2279805 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LA372_RS11035 (2280022) | 2280022..2280273 | + | 252 | WP_000980994.1 | protein Rem | - |
| LA372_RS11040 (2280340) | 2280340..2280618 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LA372_RS11045 (2280620) | 2280620..2281669 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LA372_RS11050 (2281683) | 2281683..2282435 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LA372_RS11055 (2282713) | 2282713..2282802 | - | 90 | WP_122985911.1 | hypothetical protein | - |
| LA372_RS11060 (2282857) | 2282857..2283069 | - | 213 | WP_024172454.1 | cold shock-like protein CspF | - |
| LA372_RS11065 (2283368) | 2283368..2283583 | + | 216 | WP_000066485.1 | cold shock-like protein CspB | - |
| LA372_RS11070 (2283947) | 2283947..2284117 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| LA372_RS11075 (2284336) | 2284336..2284551 | + | 216 | WP_047624855.1 | class II holin family protein | - |
| LA372_RS11080 (2284556) | 2284556..2284867 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LA372_RS11085 (2284864) | 2284864..2285397 | + | 534 | WP_001092971.1 | lysozyme | - |
| LA372_RS11090 (2285394) | 2285394..2285891 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LA372_RS11095 (2286254) | 2286254..2286466 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LA372_RS11100 (2286477) | 2286477..2286665 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LA372_RS11105 (2286668) | 2286668..2286733 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LA372_RS11110 (2286813) | 2286813..2286968 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LA372_RS11115 (2287140) | 2287140..2287313 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LA372_RS11120 (2287465) | 2287465..2287875 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LA372_RS11125 (2287933) | 2287933..2288166 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LA372_RS11130 (2288555) | 2288555..2289100 | + | 546 | WP_224205041.1 | DNA-packaging protein | - |
| LA372_RS11135 (2289075) | 2289075..2291000 | + | 1926 | WP_047624857.1 | phage terminase large subunit family protein | - |
| LA372_RS11140 (2290997) | 2290997..2291203 | + | 207 | WP_000198149.1 | gpW family protein | - |
| LA372_RS11145 (2291200) | 2291200..2292801 | + | 1602 | WP_047624858.1 | phage portal protein | - |
| LA372_RS11150 (2292782) | 2292782..2294101 | + | 1320 | WP_047624860.1 | S49 family peptidase | - |
| LA372_RS11155 (2294111) | 2294111..2294443 | + | 333 | WP_001338090.1 | head decoration protein | - |
| LA372_RS11160 (2294499) | 2294499..2295524 | + | 1026 | WP_032140162.1 | major capsid protein | - |
| LA372_RS11165 (2295566) | 2295566..2295961 | + | 396 | WP_000158868.1 | DNA-packaging protein FI | - |
| LA372_RS11170 (2295973) | 2295973..2296326 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| LA372_RS11175 (2296338) | 2296338..2296916 | + | 579 | WP_032164853.1 | phage tail protein | - |
| LA372_RS11180 (2296913) | 2296913..2297308 | + | 396 | WP_000683117.1 | phage minor tail U family protein | - |
| LA372_RS11185 (2297316) | 2297316..2298056 | + | 741 | WP_224205042.1 | phage tail protein | - |
| LA372_RS11190 (2298072) | 2298072..2298494 | + | 423 | WP_000479155.1 | phage minor tail protein G | - |
| LA372_RS11195 (2298476) | 2298476..2298910 | + | 435 | WP_047624863.1 | phage tail assembly protein T | - |
| LA372_RS11200 (2298903) | 2298903..2301464 | + | 2562 | WP_072646392.1 | phage tail tape measure protein | - |
| LA372_RS11205 (2301461) | 2301461..2301790 | + | 330 | WP_000847347.1 | phage tail protein | - |
| LA372_RS11210 (2301790) | 2301790..2302488 | + | 699 | WP_047624710.1 | phage minor tail protein L | - |
| LA372_RS11215 (2302494) | 2302494..2303237 | + | 744 | WP_001349921.1 | C40 family peptidase | - |
| LA372_RS11220 (2303234) | 2303234..2303806 | + | 573 | WP_250667654.1 | tail assembly protein | - |
| LA372_RS11225 (2303867) | 2303867..2307280 | + | 3414 | WP_224205043.1 | host specificity protein J | - |
| LA372_RS11230 (2307351) | 2307351..2307950 | + | 600 | WP_001233093.1 | Outer membrane protein X | VF |
| LA372_RS11235 (2308015) | 2308015..2310978 | + | 2964 | WP_224205044.1 | phage tail protein | - |
| LA372_RS11240 (2310978) | 2310978..2311553 | + | 576 | WP_000885584.1 | tail fiber assembly protein | - |
| LA372_RS11245 (2311651) | 2311651..2312241 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LA372_RS11250 (2312559) | 2312559..2312792 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LA372_RS11255 (2312861) | 2312861..2312974 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LA372_RS11260 (2313578) | 2313578..2314861 | + | 1284 | Protein_2203 | MHS family MFS transporter YdfJ | - |
| LA372_RS11265 (2314950) | 2314950..2316410 | + | 1461 | WP_224205045.1 | mannitol dehydrogenase family protein | - |
| LA372_RS11270 (2316445) | 2316445..2316648 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LA372_RS11275 (2316825) | 2316825..2317511 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LA372_RS11280 (2317600) | 2317600..2318346 | - | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|