MGE detailed information
MGE type: Conjugative plasmid MGE length: 108485 bp
Accession: NZ_CP083504 Location: 1..108485 Organism: Escherichia coli strain elppa5 Replicon: plasmid unnamed1
Accession: NZ_CP083504 Location: 1..108485 Organism: Escherichia coli strain elppa5 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U08_RS25050 (1) | 1..176 | + | 176 | Protein_0 | pilus protein | - |
| K9U08_RS25055 (261) | 261..826 | - | 566 | Protein_1 | class I SAM-dependent methyltransferase | - |
| K9U08_RS25060 (874) | 874..2235 | - | 1362 | WP_000170681.1 | DUF3560 domain-containing protein | - |
| K9U08_RS25065 (2287) | 2287..2517 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| K9U08_RS25070 (3034) | 3034..3287 | + | 254 | Protein_4 | hypothetical protein | - |
| K9U08_RS25075 (3511) | 3511..3693 | - | 183 | WP_001027505.1 | hypothetical protein | - |
| K9U08_RS25080 (3693) | 3693..4154 | - | 462 | WP_228588613.1 | DUF1380 domain-containing protein | - |
| K9U08_RS25085 (4154) | 4154..4579 | - | 426 | WP_001198922.1 | antirestriction protein | - |
| K9U08_RS25090 (4981) | 4981..5952 | + | 972 | WP_000082154.1 | IS110 family transposase ISEc32 | Transposase |
| K9U08_RS25095 (6213) | 6213..6425 | - | 213 | WP_000092896.1 | hypothetical protein | - |
| K9U08_RS25100 (6438) | 6438..6632 | - | 195 | WP_231532840.1 | hypothetical protein | - |
| K9U08_RS25110 (7455) | 7455..7790 | - | 336 | WP_000343070.1 | hypothetical protein | - |
| K9U08_RS25115 (7859) | 7859..8206 | - | 348 | WP_001350917.1 | hypothetical protein | - |
| K9U08_RS25120 (8203) | 8203..8372 | - | 170 | Protein_14 | hypothetical protein | - |
| K9U08_RS25125 (9138) | 9138..10109 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| K9U08_RS25130 (10109) | 10109..11275 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| K9U08_RS25140 (12415) | 12415..12546 | - | 132 | Protein_18 | phosphopyruvate hydratase | - |
| K9U08_RS25145 (12544) | 12544..12801 | + | 258 | Protein_19 | Tn3 family transposase | - |
| K9U08_RS25150 (13035) | 13035..13892 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| K9U08_RS25155 (13889) | 13889..14746 | - | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| K9U08_RS25160 (14743) | 14743..15570 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| K9U08_RS25165 (15570) | 15570..16484 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| K9U08_RS25170 (16840) | 16840..17537 | + | 698 | WP_223155668.1 | IS1 family transposase IS1S | Transposase |
| K9U08_RS25175 (17717) | 17717..18230 | - | 514 | Protein_25 | DUF4113 domain-containing protein | - |
| K9U08_RS25180 (18291) | 18291..18395 | - | 105 | Protein_26 | AAA family ATPase | - |
| K9U08_RS25185 (18397) | 18397..18720 | - | 324 | Protein_27 | IS21 family transposase IS21 | Transposase |
| K9U08_RS25190 (19466) | 19466..20443 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| K9U08_RS25195 (20728) | 20728..21468 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| K9U08_RS25200 (21589) | 21589..21777 | - | 189 | WP_033559363.1 | hypothetical protein | - |
| K9U08_RS25210 (22737) | 22737..22799 | - | 63 | Protein_32 | bacteriocin | - |
| K9U08_RS25215 (22777) | 22777..23013 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| K9U08_RS25220 (23555) | 23555..23758 | - | 204 | Protein_34 | hypothetical protein | - |
| K9U08_RS25225 (23931) | 23931..24098 | + | 168 | Protein_35 | colicin-B | - |
| K9U08_RS25230 (24116) | 24116..24643 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| K9U08_RS25235 (24887) | 24887..25702 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| K9U08_RS25240 (25752) | 25752..26105 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| K9U08_RS25245 (26282) | 26282..27073 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| K9U08_RS25250 (27070) | 27070..27759 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| K9U08_RS25255 (27803) | 27803..28153 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| K9U08_RS25260 (28685) | 28685..29374 | + | 690 | WP_001513525.1 | helix-turn-helix domain-containing protein | - |
| K9U08_RS25265 (29406) | 29406..30095 | - | 690 | WP_001513524.1 | RES family NAD+ phosphorylase | - |
| K9U08_RS25270 (30551) | 30551..33760 | - | 3210 | WP_013362823.1 | hypothetical protein | - |
| K9U08_RS25275 (34149) | 34149..34406 | + | 258 | WP_013362822.1 | hypothetical protein | - |
| K9U08_RS25280 (34406) | 34406..34996 | + | 591 | WP_013362821.1 | hypothetical protein | - |
| K9U08_RS25285 (35261) | 35261..36817 | + | 1557 | WP_228588608.1 | AAA family ATPase | - |
| K9U08_RS25290 (37012) | 37012..37206 | + | 195 | Protein_48 | proQ/FINO family protein | - |
| K9U08_RS25295 (37239) | 37239..38990 | - | 1752 | Protein_49 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| K9U08_RS25300 (38994) | 38994..39386 | + | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| K9U08_RS25305 (39524) | 39524..40408 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| K9U08_RS25310 (40440) | 40440..41639 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| K9U08_RS25315 (41745) | 41745..42371 | + | 627 | WP_031606906.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| K9U08_RS25320 (42403) | 42403..42639 | - | 237 | WP_042005022.1 | hypothetical protein | - |
| K9U08_RS25325 (42693) | 42693..43529 | - | 837 | WP_000480972.1 | hypothetical protein | ARG |
| K9U08_RS25330 (43529) | 43529..44332 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| K9U08_RS25335 (44393) | 44393..45208 | - | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| K9U08_RS25340 (45516) | 45516..46367 | - | 852 | WP_048237946.1 | replication protein C, IncQ-type | - |
| K9U08_RS25345 (46354) | 46354..47073 | - | 720 | Protein_59 | helicase RepA family protein | - |
| K9U08_RS25350 (47123) | 47123..47827 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K9U08_RS25355 (47891) | 47891..48747 | - | 857 | Protein_61 | IS3 family transposase ISKpn11 | Transposase |
| K9U08_RS25360 (48839) | 48839..49381 | - | 543 | WP_002063889.1 | AAA family ATPase | - |
| K9U08_RS25365 (49394) | 49394..50254 | - | 861 | WP_000557452.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| K9U08_RS25370 (50361) | 50361..51065 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K9U08_RS25375 (51131) | 51131..51676 | + | 546 | Protein_65 | Tn3 family transposase TnpA_Tn3 | Transposase |
| K9U08_RS25380 (51712) | 51712..52127 | - | 416 | Protein_66 | IS1-like element IS1B family transposase | - |
| K9U08_RS25385 (52376) | 52376..52777 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| K9U08_RS25390 (52710) | 52710..52967 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| K9U08_RS25395 (53060) | 53060..53713 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| K9U08_RS25400 (54652) | 54652..55509 | - | 858 | WP_032152935.1 | incFII family plasmid replication initiator RepA | - |
| K9U08_RS25405 (55502) | 55502..55576 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| K9U08_RS25410 (55811) | 55811..56068 | - | 258 | WP_000083821.1 | replication regulatory protein RepA | - |
| K9U08_RS25415 (56473) | 56473..57495 | + | 1023 | WP_000156883.1 | IS110 family transposase ISSm1 | Transposase |
| K9U08_RS25420 (57967) | 57967..58320 | + | 354 | WP_000005489.1 | hypothetical protein | - |
| K9U08_RS25425 (58733) | 58733..59311 | - | 579 | WP_032152936.1 | DUF2726 domain-containing protein | - |
| K9U08_RS25430 (59344) | 59344..60041 | + | 698 | WP_223230354.1 | IS1 family transposase IS1S | Transposase |
| K9U08_RS25435 (60156) | 60156..60512 | + | 357 | WP_000229735.1 | transposase | - |
| K9U08_RS25440 (60509) | 60509..60859 | + | 351 | WP_000624725.1 | IS66 family transposase ISEc47 | Transposase |
| K9U08_RS25445 (60890) | 60890..61111 | + | 222 | WP_000080227.1 | hypothetical protein | - |
| K9U08_RS25450 (61063) | 61063..61404 | + | 342 | Protein_80 | transposase | - |
| K9U08_RS25455 (61468) | 61468..61947 | - | 480 | WP_001496175.1 | ArgR family transcriptional regulator | - |
| K9U08_RS25460 (62028) | 62028..63431 | - | 1404 | WP_000514417.1 | YfcC family protein | - |
| K9U08_RS25465 (63479) | 63479..64483 | - | 1005 | WP_000154545.1 | Ornithine carbamoyltransferase | VF |
| K9U08_RS25470 (64568) | 64568..65479 | - | 912 | WP_000440183.1 | carbamate kinase | - |
| K9U08_RS25475 (65490) | 65490..66710 | - | 1221 | WP_000410951.1 | arginine deiminase | - |
| K9U08_RS25480 (67417) | 67417..68031 | + | 615 | Protein_86 | VENN motif pre-toxin domain-containing protein | - |
| K9U08_RS25485 (68031) | 68031..68477 | - | 447 | Protein_87 | plasmid replication initiator RepA | - |
| K9U08_RS25490 (68470) | 68470..68544 | - | 75 | WP_032336874.1 | RepA leader peptide Tap | - |
| K9U08_RS25495 (68780) | 68780..69037 | - | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| K9U08_RS25500 (69321) | 69321..69470 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (69514) | 69514..69575 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (69514) | 69514..69575 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (69514) | 69514..69575 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (69514) | 69514..69575 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| K9U08_RS25505 (69714) | 69714..69896 | - | 183 | WP_000968309.1 | hypothetical protein | - |
| K9U08_RS25510 (69997) | 69997..70613 | + | 617 | Protein_92 | IS1 family transposase IS1S | Transposase |
| K9U08_RS25515 (70651) | 70651..72222 | - | 1572 | WP_023149734.1 | IS66 family transposase ISCro1 | Transposase |
| K9U08_RS25520 (72242) | 72242..72589 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| K9U08_RS25525 (72589) | 72589..73266 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| K9U08_RS25530 (73321) | 73321..73410 | + | 90 | Protein_96 | IS1 family transposase | - |
| K9U08_RS25535 (73711) | 73711..73923 | - | 213 | WP_005012601.1 | hypothetical protein | - |
| K9U08_RS25540 (74057) | 74057..74617 | - | 561 | WP_000139363.1 | fertility inhibition protein FinO | - |
| K9U08_RS25545 (74672) | 74672..75418 | - | 747 | WP_023149624.1 | conjugal transfer pilus acetylase TraX | - |
| K9U08_RS25550 (75438) | 75438..80558 | - | 5121 | WP_013362805.1 | Multifunctional conjugation protein TraI | Relaxase |
| K9U08_RS25555 (80558) | 80558..82747 | - | 2190 | WP_040110343.1 | type IV conjugative transfer system coupling protein TraD | - |
| K9U08_RS25560 (82999) | 82999..83730 | - | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| K9U08_RS25565 (83744) | 83744..84253 | - | 510 | WP_000628100.1 | conjugal transfer entry exclusion protein TraS | - |
| K9U08_RS25570 (84250) | 84250..87075 | - | 2826 | WP_001553826.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| K9U08_RS25575 (87072) | 87072..88445 | - | 1374 | WP_021518370.1 | conjugal transfer pilus assembly protein TraH | - |
| K9U08_RS25580 (88432) | 88432..88824 | - | 393 | WP_000164675.1 | F-type conjugal transfer protein TrbF | - |
| K9U08_RS25585 (88778) | 88778..89092 | - | 315 | WP_023149603.1 | P-type conjugative transfer protein TrbJ | - |
| K9U08_RS25590 (89082) | 89082..89636 | - | 555 | WP_001553830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| K9U08_RS25595 (89623) | 89623..89907 | - | 285 | WP_000624105.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| K9U08_RS25600 (89988) | 89988..90323 | + | 336 | WP_000415571.1 | hypothetical protein | - |
| K9U08_RS25605 (90304) | 90304..90645 | - | 342 | WP_000556794.1 | conjugal transfer protein TrbA | - |
| K9U08_RS25610 (90659) | 90659..91402 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| K9U08_RS25615 (91395) | 91395..91652 | - | 258 | WP_000864312.1 | conjugal transfer protein TrbE | - |
| K9U08_RS25620 (91679) | 91679..93487 | - | 1809 | WP_228588610.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| K9U08_RS25625 (93484) | 93484..94122 | - | 639 | WP_021518374.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| K9U08_RS25630 (94131) | 94131..95123 | - | 993 | WP_000830180.1 | conjugal transfer pilus assembly protein TraU | - |
| K9U08_RS25635 (95120) | 95120..95752 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| K9U08_RS25640 (95749) | 95749..96135 | - | 387 | WP_000099686.1 | type-F conjugative transfer system protein TrbI | - |
| K9U08_RS25645 (96132) | 96132..98759 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| K9U08_RS25650 (98919) | 98919..99140 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| K9U08_RS25655 (99275) | 99275..99790 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K9U08_RS25660 (99787) | 99787..100038 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| K9U08_RS25665 (100050) | 100050..100247 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| K9U08_RS25670 (100234) | 100234..100824 | - | 591 | WP_013362799.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| K9U08_RS25675 (100814) | 100814..102241 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| K9U08_RS25680 (102241) | 102241..102969 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| K9U08_RS25685 (102956) | 102956..103522 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| K9U08_RS25690 (103544) | 103544..103855 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| K9U08_RS25695 (103870) | 103870..104235 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| K9U08_RS25700 (104268) | 104268..104669 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| K9U08_RS25705 (104762) | 104762..105451 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| K9U08_RS25710 (105638) | 105638..106021 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| K9U08_RS25715 (106342) | 106342..106944 | + | 603 | WP_013362798.1 | hypothetical protein | VF |
| K9U08_RS25720 (107241) | 107241..108062 | - | 822 | WP_001234426.1 | DUF932 domain-containing protein | - |
| K9U08_RS25725 (108180) | 108180..108467 | - | 288 | WP_000107535.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|