MGE detailed information
MGE type: Prophage MGE length: 67485 bp
Accession: NZ_CP083481 Location: 541914..609398 Organism: Escherichia coli strain elppa9 Replicon: chromosome
Accession: NZ_CP083481 Location: 541914..609398 Organism: Escherichia coli strain elppa9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U12_RS02650 (537813) | 537813..539033 | + | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
| K9U12_RS02655 (539158) | 539158..539853 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| K9U12_RS02660 (539806) | 539806..541098 | - | 1293 | WP_071593650.1 | voltage-gated ClC-type chloride channel ClcB | - |
| K9U12_RS02665 (541257) | 541257..541871 | - | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| K9U12_RS02670 (541914) | 541914..542768 | - | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| K9U12_RS02675 (542770) | 542770..543387 | - | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| K9U12_RS02680 (543398) | 543398..545821 | - | 2424 | WP_072170800.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| K9U12_RS02685 (545882) | 545882..548308 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| K9U12_RS02690 (548507) | 548507..548812 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| K9U12_RS02695 (548920) | 548920..549630 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| K9U12_RS02700 (549633) | 549633..550193 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| K9U12_RS02705 (550228) | 550228..550569 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| K9U12_RS02710 (550704) | 550704..551030 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| K9U12_RS02715 (551236) | 551236..552450 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| K9U12_RS02720 (552462) | 552462..553481 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| K9U12_RS02725 (553669) | 553669..554949 | - | 1281 | WP_021523105.1 | site-specific integrase | - |
| K9U12_RS02730 (555005) | 555005..556576 | - | 1572 | WP_029392005.1 | IS66-like element ISCro1 family transposase | - |
| K9U12_RS02735 (556596) | 556596..556943 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| K9U12_RS02740 (556943) | 556943..557620 | - | 678 | WP_001339397.1 | IS66-like element accessory protein TnpA | - |
| K9U12_RS02745 (557691) | 557691..557942 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| K9U12_RS02750 (558015) | 558015..560486 | - | 2472 | WP_000048363.1 | exonuclease | - |
| K9U12_RS02755 (560580) | 560580..560771 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| K9U12_RS02760 (560768) | 560768..560956 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| K9U12_RS02765 (561443) | 561443..562018 | - | 576 | WP_000344950.1 | hypothetical protein | - |
| K9U12_RS02770 (562020) | 562020..562175 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| K9U12_RS02775 (562344) | 562344..562751 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| K9U12_RS02780 (562832) | 562832..563059 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| K9U12_RS02785 (563043) | 563043..563564 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| K9U12_RS02790 (563545) | 563545..564510 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| K9U12_RS02795 (564551) | 564551..564949 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| K9U12_RS02800 (565152) | 565152..565817 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| K9U12_RS02805 (566026) | 566026..566640 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| K9U12_RS02810 (566643) | 566643..567665 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| K9U12_RS02815 (568170) | 568170..569240 | + | 1071 | Protein_551 | ISNCY family transposase | - |
| K9U12_RS02820 (569313) | 569313..569462 | + | 150 | WP_011443592.1 | protein YdfW | - |
| K9U12_RS02825 (569899) | 569899..570231 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| K9U12_RS02830 (570434) | 570434..570739 | - | 306 | WP_001326990.1 | protein YdfV | - |
| K9U12_RS02835 (570764) | 570764..571003 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| K9U12_RS02840 (571003) | 571003..571290 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| K9U12_RS02845 (571362) | 571362..571517 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| K9U12_RS02850 (571734) | 571734..571985 | + | 252 | WP_000980994.1 | protein Rem | - |
| K9U12_RS02855 (572052) | 572052..572330 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| K9U12_RS02860 (572332) | 572332..573381 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| K9U12_RS02865 (573395) | 573395..574147 | + | 753 | WP_001047135.1 | antitermination protein | - |
| K9U12_RS02870 (574425) | 574425..574514 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| K9U12_RS02875 (574569) | 574569..574781 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| K9U12_RS02880 (575082) | 575082..575297 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| K9U12_RS02885 (575748) | 575748..576206 | + | 459 | WP_000526135.1 | IS200/IS605-like element IS200C family transposase | - |
| K9U12_RS02890 (576373) | 576373..576543 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| K9U12_RS02895 (576763) | 576763..576978 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| K9U12_RS02900 (576983) | 576983..577294 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| K9U12_RS02905 (577291) | 577291..577824 | + | 534 | WP_001092971.1 | lysozyme | - |
| K9U12_RS02910 (577821) | 577821..578318 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| K9U12_RS02915 (578681) | 578681..578893 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| K9U12_RS02920 (578904) | 578904..579092 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| K9U12_RS02925 (579095) | 579095..579160 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| K9U12_RS02930 (579240) | 579240..579395 | + | 156 | WP_001309517.1 | protein YnfN | - |
| K9U12_RS02935 (579567) | 579567..579740 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| K9U12_RS02940 (579892) | 579892..580302 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| K9U12_RS02945 (580360) | 580360..580593 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| K9U12_RS02950 (580982) | 580982..581527 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| K9U12_RS02955 (581502) | 581502..583427 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| K9U12_RS02960 (583424) | 583424..583630 | + | 207 | WP_000198149.1 | gpW family protein | - |
| K9U12_RS02965 (583627) | 583627..585228 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| K9U12_RS02970 (585209) | 585209..586528 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| K9U12_RS02975 (586538) | 586538..586870 | + | 333 | WP_001708751.1 | head decoration protein | - |
| K9U12_RS02980 (586925) | 586925..587950 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| K9U12_RS02985 (587992) | 587992..588390 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| K9U12_RS02990 (588402) | 588402..588755 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| K9U12_RS02995 (588767) | 588767..589345 | + | 579 | WP_000975070.1 | phage tail protein | - |
| K9U12_RS03000 (589342) | 589342..589737 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| K9U12_RS03005 (589745) | 589745..590485 | + | 741 | WP_001349920.1 | phage tail protein | - |
| K9U12_RS03010 (590501) | 590501..590923 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| K9U12_RS03015 (590905) | 590905..591339 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| K9U12_RS03020 (591332) | 591332..593893 | + | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| K9U12_RS03025 (593890) | 593890..594219 | + | 330 | WP_000847345.1 | phage tail protein | - |
| K9U12_RS03030 (594219) | 594219..594917 | + | 699 | WP_228571325.1 | phage minor tail protein L | - |
| K9U12_RS03035 (594923) | 594923..595666 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| K9U12_RS03040 (595603) | 595603..596205 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| K9U12_RS03045 (596266) | 596266..599745 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| K9U12_RS03050 (599813) | 599813..600412 | + | 600 | WP_001542091.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| K9U12_RS03055 (600477) | 600477..602876 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| K9U12_RS03060 (602873) | 602873..603154 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| K9U12_RS03065 (603164) | 603164..603868 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| K9U12_RS03070 (603879) | 603879..604172 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| K9U12_RS03075 (604192) | 604192..604302 | + | 111 | Protein_603 | tail fiber assembly protein | - |
| K9U12_RS03080 (604400) | 604400..604991 | - | 592 | Protein_604 | recombinase family protein | - |
| K9U12_RS03085 (605308) | 605308..605541 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| K9U12_RS03090 (605610) | 605610..605723 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| K9U12_RS03095 (606327) | 606327..607610 | + | 1284 | Protein_607 | MHS family MFS transporter YdfJ | - |
| K9U12_RS03100 (607699) | 607699..609159 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| K9U12_RS03105 (609195) | 609195..609398 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| K9U12_RS03110 (609576) | 609576..610262 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator rspR | - |
| K9U12_RS03115 (610351) | 610351..611097 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| K9U12_RS03120 (611234) | 611234..613279 | + | 2046 | WP_001523328.1 | peptidyl-dipeptidase Dcp | - |
| K9U12_RS03125 (613324) | 613324..613404 | - | 81 | Protein_613 | hypothetical protein | - |
| K9U12_RS03130 (613644) | 613644..614036 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|