MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 129872 bp
Accession: NZ_CP083363 Location: 1..129872 Organism: Vibrio parahaemolyticus strain 20-082E4 Replicon: plasmid pVp-20-082E4A
Accession: NZ_CP083363 Location: 1..129872 Organism: Vibrio parahaemolyticus strain 20-082E4 Replicon: plasmid pVp-20-082E4A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9N54_RS25490 (K9N54_25360) | 21..215 | + | 195 | WP_224067197.1 | hypothetical protein | - |
| K9N54_RS25495 (K9N54_25365) | 229..813 | + | 585 | WP_017449296.1 | hypothetical protein | VF |
| K9N54_RS25500 (K9N54_25370) | 813..1340 | + | 528 | WP_086585374.1 | hypothetical protein | - |
| K9N54_RS25505 | 1337..1957 | + | 621 | WP_224067199.1 | type II secretion system protein | - |
| K9N54_RS25510 | 1893..2297 | + | 405 | WP_224067200.1 | hypothetical protein | - |
| K9N54_RS25515 (K9N54_25380) | 2313..2726 | + | 414 | WP_051850380.1 | hypothetical protein | - |
| K9N54_RS25520 (K9N54_25385) | 2837..3871 | + | 1035 | WP_031501983.1 | trypsin-like serine protease | - |
| K9N54_RS25525 (K9N54_25390) | 4015..4284 | + | 270 | WP_017449301.1 | helix-turn-helix domain-containing protein | - |
| K9N54_RS25530 (K9N54_25395) | 4527..4679 | + | 153 | WP_024700485.1 | Hok/Gef family protein | - |
| K9N54_RS25535 (K9N54_25400) | 5563..5967 | + | 405 | WP_263422419.1 | S26 family signal peptidase | - |
| K9N54_RS25540 (K9N54_25410) | 6083..6598 | + | 516 | WP_031431357.1 | Type IV secretion system protein virB1 | VF |
| K9N54_RS25545 (K9N54_25415) | 6659..7240 | + | 582 | WP_031500706.1 | hypothetical protein | - |
| K9N54_RS25550 (K9N54_25420) | 7251..7646 | + | 396 | WP_029559350.1 | hypothetical protein | - |
| K9N54_RS25555 (K9N54_25425) | 7577..8587 | - | 1011 | WP_023622750.1 | hypothetical protein | - |
| K9N54_RS25560 (K9N54_25430) | 8692..8982 | + | 291 | WP_031500709.1 | hypothetical protein | - |
| K9N54_RS25565 (K9N54_25435) | 8975..9688 | + | 714 | WP_031431352.1 | hypothetical protein | - |
| K9N54_RS25570 (K9N54_25440) | 10282..10689 | + | 408 | WP_031500711.1 | H-NS family nucleoid-associated regulatory protein | - |
| K9N54_RS25575 (K9N54_25445) | 11682..13643 | + | 1962 | WP_029787224.1 | TraM recognition domain-containing protein | - |
| K9N54_RS25580 (K9N54_25450) | 13674..14213 | + | 540 | WP_024700497.1 | hypothetical protein | - |
| K9N54_RS25585 (K9N54_25455) | 14210..14950 | + | 741 | WP_024700498.1 | MobC family replication-relaxation protein | - |
| K9N54_RS25590 (K9N54_25460) | 15023..17233 | + | 2211 | WP_024700499.1 | DNA topoisomerase | - |
| K9N54_RS25595 (K9N54_25465) | 17800..18009 | + | 210 | WP_023623303.1 | hypothetical protein | - |
| K9N54_RS25600 (K9N54_25470) | 18039..18332 | + | 294 | WP_023623304.1 | hypothetical protein | - |
| K9N54_RS25605 (K9N54_25475) | 18645..19037 | - | 393 | WP_024700500.1 | hypothetical protein | - |
| K9N54_RS25610 (K9N54_25480) | 19143..19556 | - | 414 | WP_024700501.1 | antirestriction protein | - |
| K9N54_RS25615 (K9N54_25485) | 19717..20058 | - | 342 | WP_024700502.1 | hypothetical protein | - |
| K9N54_RS25620 (K9N54_25490) | 20128..21033 | - | 906 | WP_024700503.1 | zincin-like metallopeptidase domain-containing protein | - |
| K9N54_RS25625 (K9N54_25495) | 21248..21505 | - | 258 | WP_017449219.1 | hypothetical protein | - |
| K9N54_RS25630 (K9N54_25500) | 21756..22112 | + | 357 | WP_023623164.1 | hypothetical protein | - |
| K9N54_RS25635 (K9N54_25505) | 22158..23294 | - | 1137 | WP_023623165.1 | GIY-YIG nuclease family protein | - |
| K9N54_RS25640 (K9N54_25510) | 23805..24233 | - | 429 | WP_025499522.1 | hypothetical protein | - |
| K9N54_RS25645 (K9N54_25515) | 24217..24903 | - | 687 | WP_049874738.1 | hypothetical protein | - |
| K9N54_RS25650 (K9N54_25520) | 25615..26262 | - | 648 | WP_023623169.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| K9N54_RS25655 (K9N54_25525) | 26440..29466 | + | 3027 | WP_025499520.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| K9N54_RS25660 (K9N54_25530) | 29472..29966 | - | 495 | WP_224067202.1 | hypothetical protein | - |
| K9N54_RS25665 (K9N54_25535) | 29963..30316 | - | 354 | WP_140130651.1 | hypothetical protein | - |
| K9N54_RS25670 (K9N54_25540) | 30348..30527 | + | 180 | WP_100550328.1 | hypothetical protein | - |
| K9N54_RS25675 (K9N54_25545) | 30604..31734 | - | 1131 | WP_031501747.1 | hypothetical protein | - |
| K9N54_RS25680 (K9N54_25550) | 31734..33236 | - | 1503 | WP_086585376.1 | hypothetical protein | VF |
| K9N54_RS25685 (K9N54_25555) | 33236..34084 | - | 849 | WP_224067204.1 | hypothetical protein | - |
| K9N54_RS25690 (K9N54_25560) | 34125..35381 | - | 1257 | WP_086585377.1 | TrbI/VirB10 family protein | - |
| K9N54_RS25695 (K9N54_25565) | 35374..35796 | - | 423 | WP_031501941.1 | hypothetical protein | - |
| K9N54_RS25700 (K9N54_25570) | 35796..36668 | - | 873 | WP_031501939.1 | P-type conjugative transfer protein TrbG | - |
| K9N54_RS25705 (K9N54_25575) | 36677..37351 | - | 675 | WP_017449286.1 | VirB8/TrbF family protein | - |
| K9N54_RS25710 (K9N54_25580) | 37361..37558 | - | 198 | WP_023623311.1 | hypothetical protein | - |
| K9N54_RS25715 (K9N54_25585) | 37569..38885 | - | 1317 | WP_042774535.1 | P-type conjugative transfer protein TrbL | - |
| K9N54_RS25720 (K9N54_25590) | 38882..39829 | - | 948 | WP_029864803.1 | Type IV secretion system protein VirB11 | VF |
| K9N54_RS25725 (K9N54_25595) | 39840..40598 | - | 759 | WP_051852233.1 | P-type conjugative transfer protein TrbJ | - |
| K9N54_RS25730 (K9N54_25600) | 40595..43009 | - | 2415 | WP_086585378.1 | DUF87 domain-containing protein | - |
| K9N54_RS25735 (K9N54_25605) | 43049..43363 | - | 315 | WP_031502005.1 | conjugal transfer protein TrbD | - |
| K9N54_RS25740 (K9N54_25610) | 43374..43703 | - | 330 | WP_044140172.1 | TrbC/VirB2 family protein | - |
| K9N54_RS25745 (K9N54_25615) | 43754..43906 | - | 153 | WP_032072624.1 | hypothetical protein | - |
| K9N54_RS25750 (K9N54_25620) | 43984..44280 | + | 297 | WP_042775695.1 | hypothetical protein | - |
| K9N54_RS25755 (K9N54_25625) | 44611..45258 | + | 648 | WP_025983428.1 | XRE family transcriptional regulator | - |
| K9N54_RS25760 (K9N54_25630) | 45659..46558 | + | 900 | WP_017449275.1 | hypothetical protein | - |
| K9N54_RS26745 | 47794..47922 | - | 129 | WP_017449273.1 | hypothetical protein | - |
| K9N54_RS25765 (K9N54_25635) | 48063..48248 | - | 186 | Protein_56 | helix-turn-helix domain-containing protein | - |
| K9N54_RS25770 (K9N54_25640) | 48968..50167 | + | 1200 | WP_017449270.1 | ParA family protein | - |
| K9N54_RS25775 (K9N54_25645) | 50167..51237 | + | 1071 | WP_031501864.1 | ParB family protein | - |
| K9N54_RS25780 (K9N54_25650) | 51231..51521 | - | 291 | Protein_59 | transposase | - |
| K9N54_RS25785 (K9N54_25655) | 51731..53650 | - | 1920 | WP_031501863.1 | metallophosphoesterase | - |
| K9N54_RS25790 (K9N54_25660) | 54094..54384 | - | 291 | Protein_61 | transposase | - |
| K9N54_RS25795 (K9N54_25665) | 55560..56153 | - | 594 | WP_157802688.1 | transglutaminase-like cysteine peptidase | - |
| K9N54_RS25800 (K9N54_25670) | 56368..56850 | + | 483 | Protein_63 | DDE-type integrase/transposase/recombinase | - |
| K9N54_RS25805 (K9N54_25675) | 57488..62374 | - | 4887 | WP_161780960.1 | Ig-like domain-containing protein | - |
| K9N54_RS25810 (K9N54_25680) | 62392..63489 | - | 1098 | WP_025792418.1 | Outer membrane protein A | VF |
| K9N54_RS25815 (K9N54_25685) | 63931..65022 | + | 1092 | Protein_66 | IS3 family transposase | - |
| K9N54_RS25820 (K9N54_25690) | 65019..65162 | + | 144 | WP_153189461.1 | hypothetical protein | - |
| K9N54_RS25825 (K9N54_25695) | 65307..65510 | + | 204 | Protein_68 | hypothetical protein | VF |
| K9N54_RS25830 (K9N54_25700) | 65985..66350 | - | 366 | WP_025789498.1 | hypothetical protein | - |
| K9N54_RS25835 (K9N54_25705) | 66416..67048 | - | 633 | WP_129194440.1 | hypothetical protein | - |
| K9N54_RS25840 (K9N54_25710) | 67307..70084 | - | 2778 | WP_086585380.1 | hypothetical protein | - |
| K9N54_RS25845 (K9N54_25715) | 70088..71008 | - | 921 | WP_051850368.1 | OmpA family protein | - |
| K9N54_RS25850 (K9N54_25720) | 71008..72063 | - | 1056 | WP_025499517.1 | hypothetical protein | - |
| K9N54_RS25855 (K9N54_25725) | 72063..72812 | - | 750 | WP_025789494.1 | hypothetical protein | - |
| K9N54_RS25860 (K9N54_25730) | 72818..75553 | - | 2736 | WP_025789493.1 | TcfC E-set like domain-containing protein | - |
| K9N54_RS25865 (K9N54_25735) | 75550..76107 | - | 558 | WP_025789492.1 | hypothetical protein | - |
| K9N54_RS25870 (K9N54_25740) | 76185..76823 | - | 639 | WP_025789491.1 | hypothetical protein | - |
| K9N54_RS25875 (K9N54_25745) | 77191..77829 | + | 639 | Protein_78 | IS5 family transposase ISVpa3 | Transposase |
| K9N54_RS25880 (K9N54_25750) | 78163..79239 | + | 1077 | WP_086585381.1 | replication initiation protein | - |
| K9N54_RS25885 | 80130..80221 | + | 92 | Protein_80 | DUF3265 domain-containing protein | - |
| K9N54_RS25890 (K9N54_25755) | 80482..81213 | + | 732 | WP_023624652.1 | AHH domain-containing protein | - |
| K9N54_RS25895 (K9N54_25760) | 81213..81788 | + | 576 | WP_017449240.1 | hypothetical protein | - |
| K9N54_RS25900 (K9N54_25765) | 82091..82432 | - | 342 | WP_023624650.1 | endoribonuclease MazF | Toxin Detail |
| K9N54_RS25905 (K9N54_25770) | 82429..82659 | - | 231 | WP_031501799.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| K9N54_RS25910 (K9N54_25775) | 83308..83835 | + | 528 | WP_229036058.1 | site-specific integrase | - |
| K9N54_RS25915 (K9N54_25780) | 83830..84213 | - | 384 | Protein_86 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| K9N54_RS25920 (K9N54_25785) | 84816..85037 | - | 222 | WP_023624649.1 | hypothetical protein | - |
| K9N54_RS25925 (K9N54_25790) | 85347..85721 | + | 375 | WP_042761155.1 | hypothetical protein | - |
| K9N54_RS25930 (K9N54_25795) | 86282..87286 | + | 1005 | WP_158501040.1 | Ig-like domain-containing protein | - |
| K9N54_RS25935 (K9N54_25800) | 87252..87884 | + | 633 | WP_023624646.1 | Ig-like domain-containing protein | - |
| K9N54_RS25940 (K9N54_25805) | 88345..88779 | - | 435 | WP_023624645.1 | IS630 family transposase ISSod10 | Transposase |
| K9N54_RS25945 (K9N54_25810) | 89566..90498 | + | 933 | WP_023624644.1 | OmpA family protein | - |
| K9N54_RS25950 (K9N54_25815) | 90580..90828 | + | 249 | WP_025789522.1 | helix-turn-helix domain-containing protein | - |
| K9N54_RS25955 (K9N54_25820) | 90904..91203 | + | 300 | WP_023624643.1 | hypothetical protein | - |
| K9N54_RS25960 | 91239..91366 | + | 128 | Protein_95 | IS91 family transposase | - |
| K9N54_RS25965 (K9N54_25825) | 91581..91757 | + | 177 | WP_023624642.1 | hypothetical protein | - |
| K9N54_RS25970 (K9N54_25830) | 92096..93235 | + | 1140 | WP_025789523.1 | Murein DD-endopeptidase MepM | VF |
| K9N54_RS25975 (K9N54_25835) | 93624..93836 | + | 213 | WP_127914006.1 | hypothetical protein | - |
| K9N54_RS25980 (K9N54_25840) | 93852..94169 | - | 318 | WP_023624638.1 | CcdB family protein | - |
| K9N54_RS25985 (K9N54_25845) | 94169..94414 | - | 246 | WP_017449246.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| K9N54_RS25990 (K9N54_25850) | 94515..95000 | - | 486 | WP_023624637.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| K9N54_RS25995 (K9N54_25855) | 95001..95276 | - | 276 | WP_224067181.1 | IS6 family transposase ISSba18 | Transposase |
| K9N54_RS26000 (K9N54_25860) | 95650..96234 | + | 585 | Protein_103 | replication initiation protein | - |
| K9N54_RS26005 (K9N54_25865) | 96725..97144 | - | 420 | WP_129194448.1 | Spy/CpxP family protein refolding chaperone | - |
| K9N54_RS26010 (K9N54_25870) | 97302..97475 | - | 174 | WP_017449264.1 | hypothetical protein | - |
| K9N54_RS26015 (K9N54_25875) | 98183..98524 | - | 342 | WP_228521640.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| K9N54_RS26020 (K9N54_25880) | 98652..99635 | - | 984 | WP_017449262.1 | outer membrane beta-barrel protein | - |
| K9N54_RS26025 (K9N54_25885) | 99778..100299 | - | 522 | WP_025789149.1 | outer membrane beta-barrel protein | - |
| K9N54_RS26030 (K9N54_25890) | 100727..101752 | - | 1026 | Protein_109 | IS91 family transposase ISVa3 | Transposase |
| K9N54_RS26035 | 101905..102075 | - | 171 | WP_224067182.1 | hypothetical protein | - |
| K9N54_RS26040 (K9N54_25900) | 103080..103400 | - | 321 | WP_025792429.1 | hypothetical protein | - |
| K9N54_RS26045 (K9N54_25905) | 103436..103642 | - | 207 | WP_023623181.1 | hypothetical protein | - |
| K9N54_RS26050 (K9N54_25910) | 103651..103875 | - | 225 | WP_025789152.1 | hypothetical protein | - |
| K9N54_RS26055 (K9N54_25915) | 103934..104559 | - | 626 | Protein_114 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| K9N54_RS26060 (K9N54_25920) | 104901..106154 | - | 1254 | WP_025789153.1 | hypothetical protein | - |
| K9N54_RS26065 (K9N54_25925) | 106513..106656 | - | 144 | WP_023623177.1 | hypothetical protein | - |
| K9N54_RS26070 (K9N54_25930) | 107056..107442 | - | 387 | WP_025792428.1 | hypothetical protein | - |
| K9N54_RS26075 (K9N54_25935) | 107580..108182 | - | 603 | WP_023623175.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| K9N54_RS26080 (K9N54_25940) | 108700..109503 | + | 804 | WP_196952927.1 | hypothetical protein | - |
| K9N54_RS26085 (K9N54_25945) | 109506..109907 | + | 402 | WP_025788834.1 | hypothetical protein | - |
| K9N54_RS26090 (K9N54_25950) | 109987..111150 | - | 1164 | WP_196952928.1 | hypothetical protein | - |
| K9N54_RS26095 | 111358..111429 | - | 72 | Protein_122 | DUF3265 domain-containing protein | - |
| K9N54_RS26100 (K9N54_25955) | 111440..111904 | - | 465 | WP_196952929.1 | hypothetical protein | - |
| K9N54_RS26105 (K9N54_25960) | 112157..112396 | - | 240 | WP_025788838.1 | hypothetical protein | - |
| K9N54_RS26115 (K9N54_25970) | 113503..116529 | - | 3027 | WP_025499520.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| K9N54_RS26120 (K9N54_25975) | 116707..117354 | + | 648 | WP_023623169.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| K9N54_RS26125 | 117478..118593 | + | 1116 | WP_224067183.1 | hypothetical protein | - |
| K9N54_RS26130 (K9N54_25985) | 119638..120774 | + | 1137 | WP_023623165.1 | GIY-YIG nuclease family protein | - |
| K9N54_RS26135 (K9N54_25990) | 120820..121176 | - | 357 | WP_023623164.1 | hypothetical protein | - |
| K9N54_RS26140 (K9N54_25995) | 121426..121683 | + | 258 | WP_017449219.1 | hypothetical protein | - |
| K9N54_RS26145 (K9N54_26000) | 121897..122800 | + | 904 | Protein_131 | zincin-like metallopeptidase domain-containing protein | - |
| K9N54_RS26150 (K9N54_26005) | 122869..123267 | + | 399 | WP_224067184.1 | hypothetical protein | - |
| K9N54_RS26155 (K9N54_26010) | 123370..123783 | + | 414 | WP_024700501.1 | antirestriction protein | - |
| K9N54_RS26160 (K9N54_26015) | 123888..124280 | + | 393 | WP_024700500.1 | hypothetical protein | - |
| K9N54_RS26165 (K9N54_26020) | 124593..124886 | - | 294 | WP_023623304.1 | hypothetical protein | - |
| K9N54_RS26170 (K9N54_26025) | 124916..125125 | - | 210 | WP_023623303.1 | hypothetical protein | - |
| K9N54_RS26175 | 125663..126037 | - | 375 | WP_224067185.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| K9N54_RS26750 | 126434..126763 | - | 330 | WP_263422417.1 | DNA topoisomerase | - |
| K9N54_RS26755 | 126844..127005 | - | 162 | WP_263422418.1 | DNA topoisomerase | - |
| K9N54_RS26185 | 127148..127483 | - | 336 | WP_224067186.1 | DNA topoisomerase | - |
| K9N54_RS26190 | 127480..127788 | - | 309 | WP_224067188.1 | toprim domain-containing protein | - |
| K9N54_RS26195 | 127974..128207 | - | 234 | WP_224067190.1 | hypothetical protein | - |
| K9N54_RS26200 | 128742..128906 | + | 165 | WP_224067193.1 | hypothetical protein | - |
| K9N54_RS26205 (K9N54_26045) | 129174..129419 | - | 246 | WP_224067195.1 | hypothetical protein | - |
| K9N54_RS26210 (K9N54_25355) | 129498..129869 | - | 372 | WP_224067211.1 | TraM recognition domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|