MGE detailed information
MGE type: Conjugative plasmid MGE length: 86164 bp
Accession: NZ_CP082826 Location: 1..86164 Organism: Escherichia coli strain SCAID URN1-2021 (19/278) Replicon: plasmid unnamed2
Accession: NZ_CP082826 Location: 1..86164 Organism: Escherichia coli strain SCAID URN1-2021 (19/278) Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8B79_RS25855 (101) | 101..628 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| K8B79_RS25860 (679) | 679..1083 | + | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| K8B79_RS25865 (1147) | 1147..1335 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| K8B79_RS25870 (1319) | 1319..2119 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| K8B79_RS25875 (2209) | 2209..5253 | + | 3045 | WP_012783939.1 | IncI1-type conjugal transfer protein TraU | - |
| K8B79_RS25880 (5253) | 5253..5867 | + | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| K8B79_RS25885 (5834) | 5834..7036 | + | 1203 | WP_012783938.1 | IncI1-type conjugal transfer protein TraW | - |
| K8B79_RS25890 (7065) | 7065..7649 | + | 585 | WP_012783937.1 | conjugal transfer protein TraX | - |
| K8B79_RS25895 (7746) | 7746..9914 | + | 2169 | WP_015508354.1 | DotA/TraY family protein | - |
| K8B79_RS25900 (9985) | 9985..10647 | + | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| K8B79_RS25905 (10719) | 10719..10928 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| K8B79_RS25910 (11320) | 11320..11496 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| K8B79_RS25915 (11561) | 11561..11857 | - | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| K8B79_RS25920 (12157) | 12157..12408 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| K8B79_RS25925 (12480) | 12480..12632 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (12684) | 12684..12744 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (12684) | 12684..12744 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (12684) | 12684..12744 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (12684) | 12684..12744 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| K8B79_RS25930 (12953) | 12953..14038 | + | 1086 | WP_000080543.1 | protein finQ | - |
| - (14108) | 14108..14165 | + | 58 | NuclAT_1 | - | - |
| - (14108) | 14108..14165 | + | 58 | NuclAT_1 | - | - |
| - (14108) | 14108..14165 | + | 58 | NuclAT_1 | - | - |
| - (14108) | 14108..14165 | + | 58 | NuclAT_1 | - | - |
| K8B79_RS25935 (14345) | 14345..15553 | + | 1209 | WP_001703845.1 | IncI1-type conjugal transfer protein TrbA | - |
| K8B79_RS25940 (15572) | 15572..16642 | + | 1071 | WP_012783932.1 | IncI1-type conjugal transfer protein TrbB | - |
| K8B79_RS25945 (16635) | 16635..18926 | + | 2292 | WP_012783931.1 | F-type conjugative transfer protein TrbC | - |
| K8B79_RS25950 (18963) | 18963..21662 | - | 2700 | WP_012783930.1 | Protein TraI | Relaxase |
| K8B79_RS25955 (21673) | 21673..22005 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| K8B79_RS25960 (22239) | 22239..22574 | + | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| K8B79_RS25965 (22660) | 22660..23508 | - | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| K8B79_RS25975 (24088) | 24088..24339 | + | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| K8B79_RS25980 (24370) | 24370..24576 | - | 207 | WP_000150314.1 | hypothetical protein | VF |
| K8B79_RS25985 (24638) | 24638..25540 | - | 903 | WP_023150544.1 | Recombination-promoting nuclease RpnA | VF |
| K8B79_RS25990 (25537) | 25537..25926 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| K8B79_RS25995 (26103) | 26103..26369 | - | 267 | WP_000804663.1 | hypothetical protein | - |
| K8B79_RS26000 (26463) | 26463..26897 | - | 435 | WP_000218858.1 | hypothetical protein | - |
| K8B79_RS26005 (27626) | 27626..28126 | - | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| K8B79_RS26010 (28588) | 28588..29184 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| K8B79_RS26015 (29181) | 29181..29900 | - | 720 | WP_012783927.1 | plasmid SOS inhibition protein A | - |
| K8B79_RS26020 (29897) | 29897..30331 | - | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| K8B79_RS26025 (30384) | 30384..32342 | - | 1959 | WP_063267868.1 | ParB/RepB/Spo0J family partition protein | - |
| K8B79_RS26030 (32401) | 32401..32634 | - | 234 | WP_015508350.1 | DUF905 domain-containing protein | - |
| K8B79_RS26035 (32692) | 32692..33219 | - | 528 | WP_012783926.1 | single-stranded DNA-binding protein | - |
| K8B79_RS26040 (33603) | 33603..33866 | - | 264 | WP_158213465.1 | hypothetical protein | - |
| K8B79_RS26045 (34004) | 34004..34195 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| K8B79_RS26050 (34192) | 34192..34614 | - | 423 | WP_000271703.1 | DUF1380 family protein | - |
| K8B79_RS26055 (34661) | 34661..35086 | - | 426 | WP_001198889.1 | antirestriction protein | - |
| K8B79_RS26060 (35499) | 35499..36269 | - | 771 | WP_012783922.1 | hypothetical protein | - |
| K8B79_RS26065 (36314) | 36314..36832 | - | 519 | WP_223350510.1 | DUF1380 family protein | - |
| K8B79_RS26070 (36762) | 36762..36983 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| K8B79_RS26075 (36984) | 36984..37667 | - | 684 | WP_000086127.1 | DNA methylase | - |
| K8B79_RS26080 (37743) | 37743..38054 | - | 312 | WP_033863049.1 | hypothetical protein | - |
| K8B79_RS26085 (38058) | 38058..38480 | - | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| K8B79_RS26090 (38483) | 38483..39463 | - | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| K8B79_RS26095 (39801) | 39801..40136 | + | 336 | WP_001340323.1 | hypothetical protein | - |
| K8B79_RS26620 (40141) | 40141..40227 | - | 87 | Protein_49 | hypothetical protein | - |
| K8B79_RS26100 (40231) | 40231..41133 | - | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| K8B79_RS26105 (41551) | 41551..41799 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| K8B79_RS26110 (41796) | 41796..42233 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| K8B79_RS26115 (42233) | 42233..43504 | + | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| K8B79_RS26120 (43692) | 43692..44318 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| K8B79_RS26125 (44315) | 44315..44617 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| K8B79_RS26130 (45116) | 45116..46510 | - | 1395 | WP_023150520.1 | protein YagA | - |
| K8B79_RS26135 (46453) | 46453..46797 | + | 345 | Protein_57 | WbuC family cupin fold metalloprotein | - |
| K8B79_RS26140 (46844) | 46844..47719 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| K8B79_RS26145 (47975) | 47975..49237 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| K8B79_RS26150 (49792) | 49792..50394 | + | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| K8B79_RS26155 (50450) | 50450..50959 | + | 510 | WP_012783913.1 | hypothetical protein | - |
| K8B79_RS26160 (51192) | 51192..51332 | - | 141 | WP_032072206.1 | hypothetical protein | - |
| K8B79_RS26165 (52029) | 52029..53060 | - | 1032 | WP_024176529.1 | plasmid replication initiator RepA | - |
| K8B79_RS26625 (54018) | 54018..54176 | + | 159 | Protein_64 | ash family protein | - |
| K8B79_RS26175 (54214) | 54214..54501 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| K8B79_RS26180 (54943) | 54943..55476 | + | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| K8B79_RS26185 (55730) | 55730..56413 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| K8B79_RS26190 (56586) | 56586..57137 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| K8B79_RS26195 (57299) | 57299..57553 | + | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| K8B79_RS26200 (57720) | 57720..58016 | + | 297 | WP_000494780.1 | hypothetical protein | - |
| K8B79_RS26205 (58640) | 58640..59707 | + | 1068 | WP_012783947.1 | hypothetical protein | VF |
| K8B79_RS26210 (59707) | 59707..60144 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| K8B79_RS26215 (60158) | 60158..61840 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| K8B79_RS26220 (61833) | 61833..63128 | + | 1296 | WP_012783946.1 | type 4b pilus protein PilO2 | - |
| K8B79_RS26225 (63115) | 63115..63567 | + | 453 | WP_012783945.1 | hypothetical protein | VF |
| K8B79_RS26230 (63578) | 63578..65131 | + | 1554 | WP_001492932.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| K8B79_RS26235 (65144) | 65144..66241 | + | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| K8B79_RS26240 (66259) | 66259..66873 | + | 615 | WP_001542527.1 | hypothetical protein | VF |
| K8B79_RS26245 (66883) | 66883..67443 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| K8B79_RS26250 (67428) | 67428..68084 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| K8B79_RS26255 (68084) | 68084..69376 | + | 1293 | WP_001417545.1 | hypothetical protein | VF |
| K8B79_RS26260 (70637) | 70637..71791 | + | 1155 | WP_001139955.1 | site-specific integrase | - |
| K8B79_RS26265 (71942) | 71942..72766 | + | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| K8B79_RS26270 (72852) | 72852..74054 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| K8B79_RS26275 (74114) | 74114..74698 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| K8B79_RS26280 (75092) | 75092..75550 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| K8B79_RS26285 (75547) | 75547..76365 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| K8B79_RS26290 (76362) | 76362..77511 | + | 1150 | Protein_88 | putative protein YggR | VF |
| K8B79_RS26295 (77508) | 77508..77798 | + | 291 | WP_001314267.1 | hypothetical protein | - |
| K8B79_RS26300 (77813) | 77813..78364 | + | 552 | WP_012783942.1 | Phospholipase D | VF |
| K8B79_RS26305 (78454) | 78454..82221 | + | 3768 | WP_012783940.1 | DUF5710 domain-containing protein | - |
| K8B79_RS26310 (82239) | 82239..82586 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| K8B79_RS26315 (82583) | 82583..83275 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| K8B79_RS26320 (83286) | 83286..84269 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| K8B79_RS26325 (84272) | 84272..85561 | + | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|