MGE detailed information
MGE type: Conjugative plasmid MGE length: 88468 bp
Accession: NZ_CP082356 Location: 1..88468 Organism: Escherichia coli strain VCSW5 Replicon: plasmid pVCSW5
Accession: NZ_CP082356 Location: 1..88468 Organism: Escherichia coli strain VCSW5 Replicon: plasmid pVCSW5
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K7X33_RS22660 (1) | 1..858 | + | 858 | WP_062897587.1 | incFII family plasmid replication initiator RepA | - |
| K7X33_RS22670 (3373) | 3373..3897 | + | 525 | WP_105633044.1 | hypothetical protein | VF |
| K7X33_RS22675 (3918) | 3918..6356 | + | 2439 | WP_105633023.1 | Outer membrane usher protein YraJ | VF |
| K7X33_RS22680 (6349) | 6349..7125 | + | 777 | WP_105633024.1 | Chaperone protein FaeE | VF |
| K7X33_RS22685 (7160) | 7160..7651 | + | 492 | WP_105633025.1 | hypothetical protein | VF |
| K7X33_RS22690 (7889) | 7889..8674 | + | 786 | WP_105633045.1 | hypothetical protein | - |
| K7X33_RS22695 (8898) | 8898..9695 | + | 798 | WP_105633026.1 | hypothetical protein | VF |
| K7X33_RS22700 (9726) | 9726..10490 | + | 765 | WP_105633027.1 | hypothetical protein | VF |
| K7X33_RS22705 (10507) | 10507..11280 | + | 774 | WP_105633028.1 | hypothetical protein | VF |
| K7X33_RS23265 (11594) | 11594..11976 | - | 383 | Protein_9 | transposase | - |
| K7X33_RS22710 (12372) | 12372..12902 | - | 531 | WP_143189712.1 | hypothetical protein | VF |
| K7X33_RS22715 (12899) | 12899..13537 | - | 639 | WP_105633031.1 | hypothetical protein | VF |
| K7X33_RS22720 (14450) | 14450..15883 | - | 1434 | WP_105633033.1 | hypothetical protein | VF |
| K7X33_RS23270 (15973) | 15973..16135 | - | 163 | Protein_13 | transcriptional regulator | - |
| K7X33_RS22725 (17003) | 17003..18437 | + | 1435 | Protein_14 | AAA family ATPase | - |
| K7X33_RS22730 (18599) | 18599..19015 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| K7X33_RS22735 (19012) | 19012..19242 | - | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| K7X33_RS22740 (19807) | 19807..20220 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| K7X33_RS22745 (20222) | 20222..21004 | + | 783 | WP_105633036.1 | site-specific integrase | - |
| K7X33_RS22750 (21177) | 21177..21530 | + | 354 | WP_000864812.1 | colicin M immunity protein | - |
| K7X33_RS22755 (21580) | 21580..22395 | - | 816 | WP_000449473.1 | lipid II-degrading bacteriocin colicin M | - |
| K7X33_RS22760 (22638) | 22638..23165 | + | 528 | WP_000203268.1 | colicin B immunity protein | - |
| K7X33_RS22765 (23183) | 23183..24718 | - | 1536 | WP_001282376.1 | pore-forming bacteriocin colicin B | - |
| K7X33_RS22770 (25159) | 25159..25671 | + | 513 | WP_001027529.1 | hypothetical protein | - |
| K7X33_RS22775 (25822) | 25822..26172 | - | 351 | WP_000361384.1 | plasmid partitioning/stability family protein | - |
| K7X33_RS22780 (26175) | 26175..27137 | - | 963 | WP_000959883.1 | plasmid segregation protein ParM | - |
| K7X33_RS22785 (27283) | 27283..27576 | + | 294 | WP_105633047.1 | hypothetical protein | - |
| K7X33_RS22790 (27653) | 27653..28336 | + | 684 | WP_000085940.1 | DNA methylase | - |
| K7X33_RS22795 (28337) | 28337..28558 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| K7X33_RS22800 (28488) | 28488..29006 | + | 519 | WP_236943475.1 | DUF1380 family protein | - |
| K7X33_RS22805 (29051) | 29051..29821 | + | 771 | WP_181950487.1 | hypothetical protein | - |
| K7X33_RS22810 (30236) | 30236..30661 | + | 426 | WP_001198930.1 | antirestriction protein | - |
| K7X33_RS22815 (30708) | 30708..31130 | + | 423 | WP_105633038.1 | DUF1380 family protein | - |
| K7X33_RS22820 (31127) | 31127..31318 | + | 192 | WP_001027522.1 | hypothetical protein | - |
| K7X33_RS22825 (32355) | 32355..32585 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| K7X33_RS22830 (32637) | 32637..33998 | + | 1362 | WP_000170675.1 | DUF3560 domain-containing protein | - |
| K7X33_RS22835 (34046) | 34046..34609 | + | 564 | WP_001377760.1 | class I SAM-dependent methyltransferase | - |
| K7X33_RS22840 (34606) | 34606..34842 | + | 237 | WP_071849628.1 | hypothetical protein | - |
| K7X33_RS23275 (34761) | 34761..35012 | + | 252 | WP_071828952.1 | hypothetical protein | - |
| K7X33_RS23280 (35253) | 35253..35459 | + | 207 | WP_000547968.1 | hypothetical protein | - |
| K7X33_RS22845 (35485) | 35485..36024 | + | 540 | WP_105633039.1 | single-stranded DNA-binding protein | - |
| K7X33_RS22850 (36086) | 36086..36319 | + | 234 | WP_105633040.1 | DUF905 family protein | - |
| K7X33_RS22855 (36385) | 36385..38343 | + | 1959 | WP_105633041.1 | ParB/RepB/Spo0J family partition protein | - |
| K7X33_RS22860 (38398) | 38398..38832 | + | 435 | WP_105633042.1 | conjugation system SOS inhibitor PsiB | - |
| K7X33_RS22865 (38829) | 38829..39591 | + | 763 | Protein_44 | plasmid SOS inhibition protein A | - |
| K7X33_RS22870 (39560) | 39560..39748 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - (39560) | 39560..39784 | + | 225 | NuclAT_0 | - | - |
| - (39560) | 39560..39784 | + | 225 | NuclAT_0 | - | - |
| - (39560) | 39560..39784 | + | 225 | NuclAT_0 | - | - |
| - (39560) | 39560..39784 | + | 225 | NuclAT_0 | - | - |
| K7X33_RS23285 (39770) | 39770..39919 | + | 150 | Protein_46 | plasmid maintenance protein Mok | - |
| K7X33_RS22875 (39861) | 39861..39986 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| K7X33_RS23290 (40207) | 40207..40437 | + | 231 | WP_001426396.1 | hypothetical protein | - |
| K7X33_RS23295 (40435) | 40435..40608 | - | 174 | Protein_49 | hypothetical protein | - |
| K7X33_RS23300 (40678) | 40678..40884 | + | 207 | WP_000547968.1 | hypothetical protein | - |
| K7X33_RS22880 (40909) | 40909..41196 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| K7X33_RS22885 (41280) | 41280..42476 | - | 1197 | WP_001358663.1 | IS110 family transposase ISEc20 | Transposase |
| K7X33_RS22890 (42769) | 42769..43590 | + | 822 | WP_143189711.1 | DUF932 domain-containing protein | - |
| K7X33_RS22895 (43887) | 43887..44477 | - | 591 | WP_165850686.1 | hypothetical protein | VF |
| K7X33_RS22900 (44810) | 44810..45193 | + | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| K7X33_RS22905 (45380) | 45380..46069 | + | 690 | WP_000283384.1 | conjugal transfer transcriptional regulator TraJ | - |
| K7X33_RS22910 (46162) | 46162..46563 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| K7X33_RS22915 (46596) | 46596..46961 | + | 366 | WP_000994782.1 | type IV conjugative transfer system pilin TraA | - |
| K7X33_RS22920 (46976) | 46976..47287 | + | 312 | WP_000012126.1 | type IV conjugative transfer system protein TraL | - |
| K7X33_RS22925 (47309) | 47309..47875 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| K7X33_RS22930 (47862) | 47862..48590 | + | 729 | WP_001230783.1 | type-F conjugative transfer system secretin TraK | - |
| K7X33_RS22935 (48590) | 48590..50017 | + | 1428 | WP_000146635.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| K7X33_RS22940 (50007) | 50007..50594 | + | 588 | WP_000002771.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| K7X33_RS22945 (50581) | 50581..50901 | + | 321 | WP_001057280.1 | conjugal transfer protein TrbD | - |
| K7X33_RS22950 (50898) | 50898..51413 | + | 516 | WP_000724020.1 | type IV conjugative transfer system lipoprotein TraV | - |
| K7X33_RS22955 (51548) | 51548..51769 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| K7X33_RS22960 (51929) | 51929..54556 | + | 2628 | WP_001064260.1 | type IV secretion system protein TraC | - |
| K7X33_RS22965 (54553) | 54553..54939 | + | 387 | WP_000214096.1 | type-F conjugative transfer system protein TrbI | - |
| K7X33_RS22970 (54936) | 54936..55568 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| K7X33_RS22975 (55565) | 55565..56557 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| K7X33_RS22980 (56566) | 56566..57204 | + | 639 | WP_024233422.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| K7X33_RS22985 (57201) | 57201..57581 | + | 381 | WP_000174466.1 | hypothetical protein | - |
| K7X33_RS22990 (57817) | 57817..59679 | + | 1863 | WP_237710346.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| K7X33_RS22995 (59706) | 59706..59963 | + | 258 | WP_000864330.1 | conjugal transfer protein TrbE | - |
| K7X33_RS23000 (59956) | 59956..60699 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| K7X33_RS23005 (60715) | 60715..61062 | + | 348 | WP_001287677.1 | conjugal transfer protein TrbA | - |
| K7X33_RS23010 (61181) | 61181..61465 | + | 285 | WP_024127867.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| K7X33_RS23015 (61452) | 61452..61997 | + | 546 | WP_000052618.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| K7X33_RS23020 (61927) | 61927..62289 | + | 363 | WP_071608404.1 | P-type conjugative transfer protein TrbJ | - |
| K7X33_RS23025 (62289) | 62289..63662 | + | 1374 | WP_172449589.1 | conjugal transfer pilus assembly protein TraH | - |
| K7X33_RS23030 (63659) | 63659..66481 | + | 2823 | WP_089615093.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| K7X33_RS23035 (66497) | 66497..66994 | + | 498 | WP_000605867.1 | hypothetical protein | - |
| K7X33_RS23040 (67026) | 67026..67757 | + | 732 | WP_024257478.1 | conjugal transfer complement resistance protein TraT | - |
| K7X33_RS23045 (68010) | 68010..70226 | + | 2217 | WP_086260416.1 | type IV conjugative transfer system coupling protein TraD | - |
| K7X33_RS23050 (70226) | 70226..75496 | + | 5271 | WP_000986939.1 | Multifunctional conjugation protein TraI | Relaxase |
| K7X33_RS23055 (75516) | 75516..76262 | + | 747 | WP_000205773.1 | conjugal transfer pilus acetylase TraX | - |
| K7X33_RS23060 (76317) | 76317..76877 | + | 561 | WP_089553850.1 | fertility inhibition protein FinO | - |
| K7X33_RS23065 (77011) | 77011..77223 | + | 213 | WP_032337303.1 | hypothetical protein | - |
| K7X33_RS23070 (77318) | 77318..77506 | + | 189 | WP_001137617.1 | hypothetical protein | - |
| K7X33_RS23075 (77509) | 77509..80058 | + | 2550 | WP_001262248.1 | DEAD/DEAH box helicase family protein | - |
| K7X33_RS23080 (80104) | 80104..82137 | + | 2034 | WP_000887497.1 | N-6 DNA methylase | - |
| K7X33_RS23085 (82202) | 82202..85057 | + | 2856 | WP_000043038.1 | hypothetical protein | - |
| K7X33_RS23305 (85634) | 85634..85758 | + | 125 | Protein_93 | hypothetical protein | - |
| K7X33_RS23090 (86381) | 86381..86530 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| K7X33_RS23095 (86862) | 86862..87152 | + | 291 | WP_021532981.1 | DUF1778 domain-containing protein | - |
| K7X33_RS23100 (87143) | 87143..87625 | + | 483 | WP_001420428.1 | GNAT family N-acetyltransferase | - |
| K7X33_RS23105 (87910) | 87910..88167 | + | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| K7X33_RS23310 (88271) | 88271..88456 | + | 186 | Protein_98 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|