MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 98473 bp
Accession: NZ_CP081307 Location: 1..98473 Organism: Escherichia coli strain Ec1079 Replicon: plasmid pEc1079_1
Accession: NZ_CP081307 Location: 1..98473 Organism: Escherichia coli strain Ec1079 Replicon: plasmid pEc1079_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5A55_RS23250 (1) | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| K5A55_RS23255 (1263) | 1263..2003 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| K5A55_RS23260 (2124) | 2124..2306 | - | 183 | WP_042065278.1 | hypothetical protein | - |
| K5A55_RS24945 (2373) | 2373..2662 | - | 290 | Protein_3 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| K5A55_RS23265 (2649) | 2649..2917 | - | 269 | Protein_4 | type II toxin-antitoxin system ParD family antitoxin | - |
| K5A55_RS23270 (3449) | 3449..4618 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| K5A55_RS23275 (4651) | 4651..4779 | + | 129 | Protein_6 | IS481 family transposase | - |
| K5A55_RS23280 (4814) | 4814..5002 | - | 189 | Protein_7 | hypothetical protein | - |
| K5A55_RS23285 (5050) | 5050..5747 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| K5A55_RS23290 (5763) | 5763..5882 | + | 120 | Protein_9 | transcriptional regulator | - |
| K5A55_RS23295 (5860) | 5860..6483 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| K5A55_RS23300 (6565) | 6565..7770 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| K5A55_RS23305 (7883) | 7883..8476 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| K5A55_RS23310 (8610) | 8610..9314 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23315 (9368) | 9368..9733 | - | 366 | Protein_14 | chromate transporter | - |
| K5A55_RS23320 (9889) | 9889..10092 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| K5A55_RS23325 (10220) | 10220..11059 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| K5A55_RS23330 (11053) | 11053..11400 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| K5A55_RS23335 (11606) | 11606..12394 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| K5A55_RS23340 (12525) | 12525..12998 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| K5A55_RS23345 (13156) | 13156..14169 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| K5A55_RS24950 (14372) | 14372..14680 | + | 309 | Protein_21 | EAL domain-containing protein | - |
| K5A55_RS23355 (14571) | 14571..15275 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23360 (15434) | 15434..15715 | - | 282 | Protein_23 | IS91 family transposase ISPps1 | Transposase |
| K5A55_RS23365 (15862) | 15862..16722 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| K5A55_RS23370 (16905) | 16905..17096 | - | 192 | Protein_25 | helix-turn-helix domain-containing protein | - |
| K5A55_RS23375 (17160) | 17160..17864 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23380 (17919) | 17919..18764 | - | 846 | Protein_27 | IS4 family transposase IS10R | Transposase |
| K5A55_RS23385 (18874) | 18874..19836 | - | 963 | Protein_28 | IS4 family transposase IS10R | Transposase |
| K5A55_RS23390 (19979) | 19979..20839 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| K5A55_RS23395 (20852) | 20852..21394 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| K5A55_RS23400 (21876) | 21876..22067 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| K5A55_RS23405 (22091) | 22091..22318 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| K5A55_RS23410 (22369) | 22369..23496 | + | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| K5A55_RS23415 (23533) | 23533..24237 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23420 (24359) | 24359..25264 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| K5A55_RS23425 (25261) | 25261..26499 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| K5A55_RS23430 (26499) | 26499..27083 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| K5A55_RS23435 (27576) | 27576..28340 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| K5A55_RS23440 (28480) | 28480..29184 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23445 (29245) | 29245..30081 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| K5A55_RS23450 (30081) | 30081..30884 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| K5A55_RS23455 (30945) | 30945..31760 | - | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| K5A55_RS23460 (32068) | 32068..32919 | - | 852 | WP_000240536.1 | replication protein C, IncQ-type | - |
| K5A55_RS23465 (32906) | 32906..33625 | - | 720 | Protein_44 | helicase RepA family protein | - |
| K5A55_RS23470 (33675) | 33675..34379 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23475 (34443) | 34443..35114 | + | 672 | Protein_46 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| K5A55_RS23480 (35339) | 35339..35980 | - | 642 | WP_000134999.1 | MBL fold metallo-hydrolase | - |
| K5A55_RS23485 (36220) | 36220..36540 | - | 321 | Protein_48 | IS1380 family transposase | - |
| K5A55_RS23490 (36553) | 36553..37113 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| K5A55_RS23495 (37116) | 37116..39587 | + | 2472 | Protein_50 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| K5A55_RS23500 (39734) | 39734..40594 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| K5A55_RS23505 (40777) | 40777..41115 | - | 339 | Protein_52 | Tn3 family transposase TnpR_Tn3 | Transposase |
| K5A55_RS23510 (41179) | 41179..41883 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS24955 (41938) | 41938..42009 | + | 72 | Protein_54 | hypothetical protein | - |
| K5A55_RS23515 (42265) | 42265..43140 | + | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| K5A55_RS23520 (43187) | 43187..43480 | - | 294 | WP_116961751.1 | WbuC family cupin fold metalloprotein | - |
| K5A55_RS23525 (43545) | 43545..45764 | + | 2220 | Protein_57 | Tn3 family transposase TnpA_Tn3 | Transposase |
| K5A55_RS23530 (45841) | 45841..46545 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23535 (46599) | 46599..47039 | - | 441 | Protein_59 | CatB-related O-acetyltransferase | - |
| K5A55_RS23540 (47177) | 47177..48007 | - | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| K5A55_RS23545 (48138) | 48138..48692 | - | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| K5A55_RS23550 (48836) | 48836..49540 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| K5A55_RS23555 (49612) | 49612..51948 | + | 2337 | Protein_63 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| K5A55_RS23560 (52085) | 52085..52486 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| K5A55_RS23565 (52419) | 52419..52676 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| K5A55_RS23570 (52769) | 52769..53422 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| K5A55_RS23575 (54362) | 54362..55219 | - | 858 | WP_000130640.1 | incFII family plasmid replication initiator RepA | - |
| K5A55_RS23580 (55212) | 55212..55286 | - | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| K5A55_RS23585 (55286) | 55286..55417 | - | 132 | Protein_69 | protein CopA/IncA | - |
| K5A55_RS23590 (55648) | 55648..57189 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| K5A55_RS23595 (57204) | 57204..57950 | + | 747 | WP_053906593.1 | IS21 family transposase ISEc12 | Transposase |
| K5A55_RS23600 (58110) | 58110..58364 | - | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| K5A55_RS23605 (58661) | 58661..58795 | - | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| - (58840) | 58840..58900 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (58840) | 58840..58900 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (58840) | 58840..58900 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (58840) | 58840..58900 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| K5A55_RS23610 (58867) | 58867..59153 | - | 287 | Protein_74 | DUF2726 domain-containing protein | - |
| K5A55_RS23615 (59666) | 59666..59878 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| K5A55_RS23620 (60009) | 60009..60569 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| K5A55_RS23625 (60624) | 60624..61370 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| K5A55_RS23630 (61390) | 61390..63783 | - | 2394 | Protein_78 | Multifunctional conjugation protein TraI | Relaxase |
| K5A55_RS23635 (63777) | 63777..64835 | - | 1059 | Protein_79 | DUF3560 domain-containing protein | - |
| K5A55_RS23640 (64887) | 64887..65117 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| K5A55_RS23645 (66152) | 66152..66343 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| K5A55_RS23650 (66340) | 66340..66762 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| K5A55_RS23655 (66809) | 66809..67234 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| K5A55_RS23660 (67651) | 67651..68427 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| K5A55_RS23665 (68478) | 68478..68996 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
| K5A55_RS23670 (68926) | 68926..69147 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| K5A55_RS23675 (69148) | 69148..69831 | - | 684 | WP_000086185.1 | DNA methylase | - |
| K5A55_RS23680 (69908) | 69908..70219 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| K5A55_RS23685 (70216) | 70216..71118 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| K5A55_RS23690 (71985) | 71985..72956 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| K5A55_RS23695 (72956) | 72956..74122 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| K5A55_RS23700 (74710) | 74710..75465 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| K5A55_RS23705 (76239) | 76239..77045 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| K5A55_RS23710 (77046) | 77046..77351 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| K5A55_RS23715 (77353) | 77353..77571 | - | 219 | WP_023909027.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| K5A55_RS23720 (78205) | 78205..78402 | + | 198 | WP_000215657.1 | hypothetical protein | - |
| K5A55_RS23725 (78399) | 78399..78683 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| K5A55_RS23730 (78703) | 78703..79836 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| K5A55_RS23735 (80099) | 80099..83218 | - | 3120 | WP_023909028.1 | hypothetical protein | - |
| K5A55_RS23740 (83525) | 83525..83755 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| K5A55_RS23745 (83752) | 83752..84168 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| K5A55_RS23750 (84330) | 84330..86468 | - | 2139 | WP_000350635.1 | AAA family ATPase | - |
| K5A55_RS23755 (86933) | 86933..87928 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| K5A55_RS23760 (87971) | 87971..88864 | + | 894 | WP_001553853.1 | S-4TM family putative pore-forming effector | - |
| K5A55_RS23770 (89912) | 89912..93028 | - | 3117 | WP_031311986.1 | HsdR family type I site-specific deoxyribonuclease | - |
| K5A55_RS23775 (93150) | 93150..94433 | - | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| K5A55_RS23780 (94430) | 94430..95986 | - | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| K5A55_RS23785 (96169) | 96169..96390 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| K5A55_RS23790 (96390) | 96390..96770 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| K5A55_RS23795 (96775) | 96775..96954 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| K5A55_RS23800 (96982) | 96982..97260 | + | 279 | Protein_112 | pdcB | - |
| K5A55_RS23805 (97265) | 97265..97678 | + | 414 | Protein_113 | IS3 family transposase ISLad1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|