MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 42244 bp
Accession: NZ_CP081019 Location: 593249..635492 Organism: Clostridioides difficile strain CD099 Replicon: chromosome
Accession: NZ_CP081019 Location: 593249..635492 Organism: Clostridioides difficile strain CD099 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2218_RS03105 (K2218_03105) | 589023..589682 | + | 660 | WP_003429717.1 | two-component system response regulator CprR | - |
| K2218_RS03110 (K2218_03110) | 589893..590951 | + | 1059 | WP_003429718.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| K2218_RS03115 (K2218_03115) | 591202..592896 | + | 1695 | Protein_514 | formate dehydrogenase subunit alpha | - |
| K2218_RS03125 (K2218_03125) | 593249..594694 | - | 1446 | WP_003423078.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| K2218_RS03130 | 594713..594913 | - | 201 | WP_021405844.1 | helix-turn-helix domain-containing protein | - |
| K2218_RS03135 (K2218_03135) | 595365..595613 | - | 249 | WP_002323370.1 | helix-turn-helix domain-containing protein | - |
| K2218_RS03140 (K2218_03140) | 595620..595901 | - | 282 | Protein_518 | sigma-70 family RNA polymerase sigma factor | - |
| K2218_RS03145 (K2218_03145) | 596363..597241 | - | 879 | WP_003423074.1 | ParA family protein | - |
| K2218_RS03150 (K2218_03150) | 597344..597604 | - | 261 | Protein_520 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| K2218_RS03155 (K2218_03155) | 597774..598511 | - | 738 | WP_002292226.1 | rRNA adenine N-6-methyltransferase | ARG |
| K2218_RS03160 (K2218_03160) | 598621..598977 | - | 357 | Protein_522 | AAA family ATPase | - |
| K2218_RS03165 (K2218_03165) | 599029..599187 | - | 159 | WP_003423072.1 | zeta toxin family protein | Toxin Detail |
| K2218_RS03170 (K2218_03170) | 599189..599461 | - | 273 | WP_000301765.1 | antitoxin | Antitoxin Detail |
| K2218_RS03175 (K2218_03175) | 599478..599693 | - | 216 | WP_002321610.1 | peptide-binding protein | - |
| K2218_RS03180 (K2218_03180) | 599880..600239 | + | 360 | WP_003423065.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS03185 (K2218_03185) | 600347..600535 | - | 189 | WP_009269672.1 | cysteine-rich KTR domain-containing protein | - |
| K2218_RS03190 (K2218_03190) | 600740..600931 | - | 192 | WP_003423063.1 | hypothetical protein | - |
| K2218_RS03195 (K2218_03195) | 600944..601588 | - | 645 | WP_003423062.1 | ABC-2 transporter permease | - |
| K2218_RS03200 (K2218_03200) | 601585..602448 | - | 864 | WP_003423060.1 | ABC transporter ATP-binding protein YtrB | VF |
| K2218_RS03205 (K2218_03205) | 602449..602826 | - | 378 | WP_003423058.1 | GntR family transcriptional regulator | - |
| K2218_RS03210 (K2218_03210) | 602947..603858 | - | 912 | WP_003423057.1 | conjugal transfer protein | - |
| K2218_RS03215 (K2218_03215) | 603874..604881 | - | 1008 | WP_003423055.1 | putative endopeptidase p60 | VF |
| K2218_RS03220 (K2218_03220) | 604878..607073 | - | 2196 | WP_003423053.1 | YtxH domain-containing protein | - |
| K2218_RS03225 (K2218_03225) | 607073..609523 | - | 2451 | WP_003423051.1 | ATP-binding protein | - |
| K2218_RS03230 (K2218_03230) | 609501..609899 | - | 399 | WP_004843362.1 | conjugal transfer protein | - |
| K2218_RS03235 (K2218_03235) | 610017..610520 | - | 504 | WP_003423048.1 | antirestriction protein ArdA | - |
| K2218_RS03240 (K2218_03240) | 610538..611041 | - | 504 | WP_003423046.1 | antirestriction protein ArdA | - |
| K2218_RS03245 (K2218_03245) | 610960..611256 | - | 297 | WP_003423044.1 | hypothetical protein | - |
| K2218_RS03250 (K2218_03250) | 611341..612117 | - | 777 | WP_003423043.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS03255 (K2218_03255) | 612321..612542 | - | 222 | WP_002323342.1 | hypothetical protein | - |
| K2218_RS03260 (K2218_03260) | 612543..612677 | - | 135 | WP_003423040.1 | DUF3789 domain-containing protein | - |
| K2218_RS03265 (K2218_03265) | 612690..613886 | - | 1197 | WP_003423038.1 | MobT family relaxase | - |
| K2218_RS03270 (K2218_03270) | 614070..615464 | - | 1395 | WP_003423037.1 | FtsK/SpoIIIE domain-containing protein | - |
| K2218_RS03275 (K2218_03275) | 615565..615891 | - | 327 | WP_003423033.1 | hypothetical protein | - |
| K2218_RS03280 (K2218_03280) | 615907..616314 | - | 408 | WP_003423032.1 | helix-turn-helix transcriptional regulator | - |
| K2218_RS03285 (K2218_03285) | 616482..616865 | - | 384 | WP_003423022.1 | YdcP family protein | - |
| K2218_RS03290 (K2218_03290) | 616881..617207 | - | 327 | WP_003417601.1 | YdcP family protein | - |
| K2218_RS03295 (K2218_03295) | 617440..620484 | - | 3045 | WP_021401955.1 | SrtB-anchored collagen-binding adhesin | - |
| K2218_RS03300 (K2218_03300) | 620787..621239 | + | 453 | Protein_550 | formate dehydrogenase H subunit alpha, selenocysteine-containing | - |
| K2218_RS03305 (K2218_03305) | 621288..622121 | + | 834 | WP_003429721.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| K2218_RS03310 (K2218_03310) | 622132..622305 | + | 174 | WP_003429722.1 | hypothetical protein | - |
| K2218_RS03315 (K2218_03315) | 622342..622893 | + | 552 | WP_003432405.1 | 4Fe-4S dicluster domain-containing protein | - |
| K2218_RS03320 (K2218_03320) | 622918..624294 | + | 1377 | WP_003429061.1 | [FeFe] hydrogenase, group A | - |
| K2218_RS03325 (K2218_03325) | 624294..624809 | + | 516 | WP_003417046.1 | 4Fe-4S dicluster domain-containing protein | - |
| K2218_RS03330 (K2218_03330) | 624887..626170 | - | 1284 | WP_003427927.1 | conjugated bile salt MFS transporter | - |
| K2218_RS03335 (K2218_03335) | 626358..626780 | + | 423 | WP_021388295.1 | DUF3783 domain-containing protein | - |
| K2218_RS03340 (K2218_03340) | 626882..627820 | + | 939 | WP_021388294.1 | phosphoglycerate dehydrogenase | - |
| K2218_RS03345 (K2218_03345) | 628006..630030 | + | 2025 | WP_021393603.1 | NAD-dependent DNA ligase LigA | - |
| K2218_RS03350 (K2218_03350) | 630190..631539 | + | 1350 | WP_003427936.1 | Ribonuclease PH | VF |
| K2218_RS03355 (K2218_03355) | 631539..632009 | + | 471 | WP_003427939.1 | metallophosphoesterase | - |
| K2218_RS03360 (K2218_03360) | 632203..633489 | + | 1287 | WP_003417090.1 | trigger factor | - |
| K2218_RS03365 (K2218_03365) | 633639..634223 | + | 585 | WP_003417102.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| K2218_RS03370 (K2218_03370) | 634242..635492 | + | 1251 | WP_003417105.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | - |
| K2218_RS03375 (K2218_03375) | 635563..636090 | - | 528 | WP_003427941.1 | chromate transporter | - |
| K2218_RS03380 (K2218_03380) | 636078..636590 | - | 513 | WP_003417110.1 | chromate transporter | - |
| K2218_RS03385 (K2218_03385) | 636770..639133 | + | 2364 | WP_003427942.1 | endopeptidase La | - |
| K2218_RS03390 (K2218_03390) | 639123..639734 | + | 612 | WP_009891775.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|