MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 27236 bp
Accession: NZ_CP081017 Location: 3850091..3877326 Organism: Clostridioides difficile strain SH Replicon: chromosome
Accession: NZ_CP081017 Location: 3850091..3877326 Organism: Clostridioides difficile strain SH Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K2217_RS17570 (K2217_17560) | 3845766..3846281 | - | 516 | WP_003417046.1 | 4Fe-4S dicluster domain-containing protein | - |
| K2217_RS17575 (K2217_17565) | 3846281..3847657 | - | 1377 | WP_003429061.1 | [FeFe] hydrogenase, group A | - |
| K2217_RS17580 (K2217_17570) | 3847682..3848233 | - | 552 | WP_003432405.1 | 4Fe-4S dicluster domain-containing protein | - |
| K2217_RS17585 (K2217_17575) | 3848270..3848443 | - | 174 | WP_003429722.1 | hypothetical protein | - |
| K2217_RS17590 (K2217_17580) | 3848454..3849287 | - | 834 | WP_003429721.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| K2217_RS17595 (K2217_17585) | 3849336..3849788 | - | 453 | Protein_3399 | formate dehydrogenase H subunit alpha, selenocysteine-containing | - |
| K2217_RS17600 (K2217_17590) | 3850091..3853135 | + | 3045 | WP_021401955.1 | SrtB-anchored collagen-binding adhesin | - |
| K2217_RS17605 (K2217_17595) | 3853368..3853694 | + | 327 | WP_003417601.1 | YdcP family protein | - |
| K2217_RS17610 (K2217_17600) | 3853710..3854093 | + | 384 | WP_003423022.1 | YdcP family protein | - |
| K2217_RS17615 (K2217_17605) | 3854261..3854668 | + | 408 | WP_003423032.1 | helix-turn-helix transcriptional regulator | - |
| K2217_RS17620 (K2217_17610) | 3854684..3855010 | + | 327 | WP_003423033.1 | hypothetical protein | - |
| K2217_RS17625 (K2217_17615) | 3855111..3856505 | + | 1395 | WP_003423037.1 | FtsK/SpoIIIE domain-containing protein | - |
| K2217_RS17630 (K2217_17620) | 3856689..3857885 | + | 1197 | WP_003423038.1 | MobT family relaxase | - |
| K2217_RS17635 (K2217_17625) | 3857898..3858032 | + | 135 | WP_003423040.1 | DUF3789 domain-containing protein | - |
| K2217_RS17640 (K2217_17630) | 3858033..3858254 | + | 222 | WP_002323342.1 | hypothetical protein | - |
| K2217_RS17645 (K2217_17635) | 3858458..3859234 | + | 777 | WP_003423043.1 | helix-turn-helix transcriptional regulator | - |
| K2217_RS17650 (K2217_17640) | 3859319..3859615 | + | 297 | WP_003423044.1 | hypothetical protein | - |
| K2217_RS17655 (K2217_17645) | 3859534..3860037 | + | 504 | WP_003423046.1 | antirestriction protein ArdA | - |
| K2217_RS17660 (K2217_17650) | 3860055..3860558 | + | 504 | WP_003423048.1 | antirestriction protein ArdA | - |
| K2217_RS17665 (K2217_17655) | 3860676..3861074 | + | 399 | WP_004843362.1 | conjugal transfer protein | - |
| K2217_RS17670 (K2217_17660) | 3861052..3863502 | + | 2451 | WP_003423051.1 | ATP-binding protein | - |
| K2217_RS17675 (K2217_17665) | 3863502..3865697 | + | 2196 | WP_003423053.1 | YtxH domain-containing protein | - |
| K2217_RS17680 (K2217_17670) | 3865694..3866701 | + | 1008 | WP_003423055.1 | hypothetical protein | VF |
| K2217_RS17685 (K2217_17675) | 3866717..3867628 | + | 912 | WP_003423057.1 | conjugal transfer protein | - |
| K2217_RS17690 (K2217_17680) | 3867749..3868126 | + | 378 | WP_003423058.1 | GntR family transcriptional regulator | - |
| K2217_RS17695 (K2217_17685) | 3868127..3868990 | + | 864 | WP_003423060.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| K2217_RS17700 (K2217_17690) | 3868987..3869631 | + | 645 | WP_003423062.1 | ABC-2 transporter permease | - |
| K2217_RS17705 (K2217_17695) | 3869644..3869835 | + | 192 | WP_003423063.1 | hypothetical protein | - |
| K2217_RS17710 (K2217_17700) | 3870040..3870228 | + | 189 | WP_009269672.1 | cysteine-rich KTR domain-containing protein | - |
| K2217_RS17715 (K2217_17705) | 3870336..3870695 | - | 360 | WP_003423065.1 | helix-turn-helix transcriptional regulator | - |
| K2217_RS17720 (K2217_17710) | 3870882..3871097 | + | 216 | WP_002321610.1 | peptide-binding protein | - |
| K2217_RS17725 (K2217_17715) | 3871114..3871386 | + | 273 | WP_000301765.1 | antitoxin | Antitoxin Detail |
| K2217_RS17730 (K2217_17720) | 3871388..3871546 | + | 159 | WP_003423072.1 | zeta toxin family protein | Toxin Detail |
| K2217_RS17735 (K2217_17725) | 3871598..3871954 | + | 357 | Protein_3427 | AAA family ATPase | - |
| K2217_RS17740 (K2217_17730) | 3872064..3872801 | + | 738 | WP_002292226.1 | Ribosomal RNA small subunit methyltransferase A | ARG |
| K2217_RS17745 (K2217_17735) | 3872971..3873231 | + | 261 | Protein_3429 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| K2217_RS17750 (K2217_17740) | 3873334..3874212 | + | 879 | WP_003423074.1 | ParA family protein | - |
| K2217_RS17755 (K2217_17745) | 3874674..3874955 | + | 282 | Protein_3431 | sigma-70 family RNA polymerase sigma factor | - |
| K2217_RS17760 (K2217_17750) | 3874962..3875210 | + | 249 | WP_002323370.1 | helix-turn-helix domain-containing protein | - |
| K2217_RS17765 | 3875662..3875862 | + | 201 | WP_021405844.1 | helix-turn-helix domain-containing protein | - |
| K2217_RS17770 (K2217_17760) | 3875881..3877326 | + | 1446 | WP_003423078.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| K2217_RS17780 (K2217_17770) | 3877679..3879373 | - | 1695 | Protein_3435 | formate dehydrogenase subunit alpha | - |
| K2217_RS17785 (K2217_17775) | 3879624..3880682 | - | 1059 | WP_003429718.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| K2217_RS17790 (K2217_17780) | 3880893..3881552 | - | 660 | WP_003429717.1 | two-component system response regulator CprR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|