MGE detailed information
MGE type: Prophage MGE length: 62813 bp
Accession: NZ_CP081007 Location: 4586865..4649677 Organism: Escherichia coli strain XL1-Blue Replicon: chromosome
Accession: NZ_CP081007 Location: 4586865..4649677 Organism: Escherichia coli strain XL1-Blue Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3826_RS22190 (4582518) | 4582518..4582706 | - | 189 | Protein_4368 | GTP-binding protein | - |
| K3826_RS22215 (4583624) | 4583624..4584574 | + | 951 | WP_000023081.1 | type I pantothenate kinase | - |
| K3826_RS22220 (4584603) | 4584603..4585568 | - | 966 | WP_000654630.1 | bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA | - |
| K3826_RS22225 (4585565) | 4585565..4586593 | - | 1029 | WP_001016699.1 | UDP-N-acetylmuramate dehydrogenase | - |
| K3826_RS22230 (4587031) | 4587031..4588434 | + | 1404 | WP_001393629.1 | S-methylmethionine permease | - |
| K3826_RS22235 (4588421) | 4588421..4589353 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| K3826_RS22240 (4589462) | 4589462..4590508 | - | 1047 | WP_000192349.1 | hypothetical protein | VF |
| K3826_RS22245 (4590520) | 4590520..4590867 | - | 348 | Protein_4375 | ABC transporter permease subunit | - |
| K3826_RS22250 (4590951) | 4590951..4591394 | + | 444 | WP_000012218.1 | transferase | - |
| K3826_RS22255 (4591396) | 4591396..4592169 | + | 774 | WP_000596084.1 | YaiO family outer membrane beta-barrel protein | - |
| K3826_RS22260 (4592357) | 4592357..4592632 | + | 276 | WP_001141271.1 | formaldehyde-responsive transcriptional repressor FrmR | - |
| K3826_RS22265 (4592667) | 4592667..4593776 | + | 1110 | WP_000842106.1 | hypothetical protein | ARG |
| K3826_RS22270 (4593870) | 4593870..4594703 | + | 834 | WP_000419081.1 | S-formylglutathione hydrolase | - |
| K3826_RS22275 (4594928) | 4594928..4595110 | + | 183 | WP_220722015.1 | helix-turn-helix domain-containing protein | - |
| K3826_RS22280 (4595229) | 4595229..4596083 | + | 855 | WP_000072039.1 | protein YagM | - |
| K3826_RS22285 (4596110) | 4596110..4596808 | + | 699 | WP_001214248.1 | recombinase family protein | - |
| K3826_RS22290 (4597080) | 4597080..4597706 | + | 627 | WP_000860996.1 | inovirus Gp2 family protein | - |
| K3826_RS22295 (4597797) | 4597797..4598528 | - | 732 | WP_000388269.1 | protein YagJ | - |
| K3826_RS22300 (4599013) | 4599013..4599228 | + | 216 | WP_000839596.1 | phage lysis protein EssD | - |
| K3826_RS22305 (4599228) | 4599228..4599725 | + | 498 | WP_001135281.1 | lysozyme RrrD | - |
| K3826_RS22310 (4599942) | 4599942..4600124 | + | 183 | WP_001228697.1 | prophage lysis lipoprotein RzoD | - |
| K3826_RS22315 (4600215) | 4600215..4600508 | - | 294 | WP_000738500.1 | serum resistance lipoprotein Bor | - |
| K3826_RS22320 (4600799) | 4600799..4601209 | - | 411 | WP_000079503.1 | DUF1398 domain-containing protein | - |
| K3826_RS22325 (4601495) | 4601495..4601701 | + | 207 | WP_001031427.1 | protein YbcW | - |
| K3826_RS22330 (4601866) | 4601866..4601991 | - | 126 | Protein_4392 | YlcI/YnfO family protein | - |
| K3826_RS22335 (4602051) | 4602051..4603166 | - | 1116 | Protein_4393 | poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | - |
| K3826_RS22340 (4603753) | 4603753..4605111 | + | 1359 | WP_000409873.1 | GGDEF domain-containing protein | - |
| K3826_RS22345 (4605277) | 4605277..4605414 | + | 138 | Protein_4395 | fimbrial family protein | - |
| K3826_RS22350 (4605452) | 4605452..4606351 | - | 900 | WP_001338226.1 | transcriptional activator NhaR | - |
| K3826_RS22355 (4606417) | 4606417..4607583 | - | 1167 | WP_000681354.1 | Na+/H+ antiporter NhaA | - |
| K3826_RS22360 (4608169) | 4608169..4608321 | + | 153 | WP_000809168.1 | type I toxin-antitoxin system toxin MokC | - |
| K3826_RS22365 (4608467) | 4608467..4608547 | + | 81 | Protein_4399 | PTS galactitol transporter subunit IIB | - |
| K3826_RS22370 (4608551) | 4608551..4609906 | + | 1356 | WP_000490679.1 | PTS galactitol transporter subunit IIC | - |
| K3826_RS22375 (4609954) | 4609954..4610994 | + | 1041 | WP_000844219.1 | galactitol-1-phosphate 5-dehydrogenase | - |
| K3826_RS22380 (4611100) | 4611100..4611399 | + | 300 | Protein_4402 | DeoR family transcriptional regulator | - |
| K3826_RS22390 (4614664) | 4614664..4615416 | + | 753 | WP_046613418.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| K3826_RS22395 (4615568) | 4615568..4616518 | + | 951 | WP_001262123.1 | universal stress protein UspE | - |
| K3826_RS22400 (4616568) | 4616568..4616825 | - | 258 | WP_000605090.1 | DUF2534 family protein | - |
| K3826_RS22405 (4617354) | 4617354..4617467 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| K3826_RS22410 (4617536) | 4617536..4617769 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| K3826_RS22415 (4618086) | 4618086..4618676 | + | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| K3826_RS22420 (4618774) | 4618774..4619349 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| K3826_RS22905 (4619349) | 4619349..4619486 | - | 138 | Protein_4410 | hypothetical protein | - |
| K3826_RS22425 (4619560) | 4619560..4620651 | - | 1092 | Protein_4411 | reverse transcriptase domain-containing protein | - |
| K3826_RS22430 (4621324) | 4621324..4621749 | - | 426 | Protein_4412 | IS3 family transposase | - |
| K3826_RS22435 (4621863) | 4621863..4622646 | - | 784 | Protein_4413 | ISAs1 family transposase ISEc26 | Transposase |
| K3826_RS22440 (4622728) | 4622728..4622913 | + | 186 | WP_120795385.1 | protein YncO | - |
| K3826_RS22910 (4622828) | 4622828..4623091 | - | 264 | WP_000247944.1 | hypothetical protein | - |
| K3826_RS22450 (4623294) | 4623294..4624120 | - | 827 | Protein_4416 | hypothetical protein | VF |
| K3826_RS22455 (4624115) | 4624115..4624756 | + | 642 | Protein_4417 | DUF4329 domain-containing protein | - |
| K3826_RS22460 (4624728) | 4624728..4625111 | + | 384 | WP_001271686.1 | protein YhhH | - |
| K3826_RS22465 (4625216) | 4625216..4625566 | + | 351 | Protein_4419 | lyase | - |
| K3826_RS22470 (4625707) | 4625707..4625925 | + | 219 | Protein_4420 | ISAs1 family transposase ISEc1 | Transposase |
| K3826_RS22475 (4625981) | 4625981..4626286 | - | 306 | Protein_4421 | TonB-dependent receptor plug domain-containing protein | - |
| K3826_RS22485 (4629395) | 4629395..4630681 | - | 1287 | Protein_4422 | IS66 family transposase | - |
| K3826_RS22490 (4630808) | 4630808..4632217 | + | 1410 | Protein_4423 | autotransporter domain-containing protein | - |
| K3826_RS22495 (4632323) | 4632323..4633435 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| K3826_RS22500 (4633828) | 4633828..4634397 | - | 570 | WP_000832338.1 | protein YbfC | - |
| K3826_RS22505 (4634394) | 4634394..4634942 | - | 549 | Protein_4426 | RHS repeat protein | - |
| K3826_RS22510 (4634938) | 4634938..4635813 | + | 876 | Protein_4427 | hypothetical protein | VF |
| K3826_RS22515 (4635813) | 4635813..4636139 | + | 327 | WP_000873944.1 | protein YbfB | - |
| K3826_RS22520 (4636192) | 4636192..4637475 | + | 1284 | WP_259472846.1 | glutamate decarboxylase | - |
| K3826_RS22525 (4637485) | 4637485..4638693 | - | 1209 | WP_006250222.1 | IS4 family transposase IS10R | Transposase |
| K3826_RS22530 (4638756) | 4638756..4639915 | + | 1160 | WP_220722007.1 | IS3 family transposase ISEc17 | Transposase |
| K3826_RS22535 (4639956) | 4639956..4640936 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| K3826_RS22540 (4641063) | 4641063..4642273 | + | 1211 | Protein_4433 | hypothetical protein | VF |
| K3826_RS22545 (4642252) | 4642252..4643058 | - | 807 | Protein_4434 | IS30 family transposase IS30D | Transposase |
| K3826_RS22915 (4643172) | 4643172..4643243 | - | 72 | Protein_4435 | hypothetical protein | - |
| K3826_RS22550 (4643238) | 4643238..4644332 | + | 1095 | Protein_4436 | hypothetical protein | VF |
| K3826_RS22555 (4644269) | 4644269..4645258 | + | 990 | Protein_4437 | hypothetical protein | VF |
| K3826_RS22920 (4645260) | 4645260..4645355 | + | 96 | Protein_4438 | DNA-packaging protein | - |
| K3826_RS22560 (4645420) | 4645420..4646184 | + | 765 | Protein_4439 | phage tail protein | - |
| K3826_RS22565 (4646276) | 4646276..4646383 | - | 108 | WP_000170955.1 | type I toxin-antitoxin system toxin Ldr family protein | Toxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_18 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_18 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_18 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_18 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_21 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_21 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_21 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_21 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_24 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_24 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_24 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_24 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_27 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_27 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_27 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_27 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_30 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_30 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_30 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_30 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_33 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_33 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_33 | - | Antitoxin Detail |
| - (4646431) | 4646431..4646498 | + | 68 | NuclAT_33 | - | Antitoxin Detail |
| K3826_RS22570 (4646811) | 4646811..4646918 | - | 108 | WP_000170955.1 | type I toxin-antitoxin system toxin Ldr family protein | Toxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_19 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_19 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_19 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_19 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_22 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_22 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_22 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_22 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_25 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_25 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_25 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_25 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_28 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_28 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_28 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_28 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_31 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_31 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_31 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_31 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_34 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_34 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_34 | - | Antitoxin Detail |
| - (4646966) | 4646966..4647033 | + | 68 | NuclAT_34 | - | Antitoxin Detail |
| K3826_RS22575 (4647073) | 4647073..4647770 | + | 698 | WP_223293341.1 | IS1 family transposase IS1R | Transposase |
| K3826_RS22580 (4647797) | 4647797..4648492 | - | 696 | Protein_4443 | IS3 family transposase IS2 | Transposase |
| K3826_RS22585 (4648493) | 4648493..4649146 | + | 654 | Protein_4444 | RHS repeat protein | - |
| K3826_RS22590 (4649147) | 4649147..4649677 | - | 531 | Protein_4445 | DNA-packaging protein | - |
| K3826_RS22605 (4650264) | 4650264..4650500 | + | 237 | Protein_4446 | ISAs1 family transposase | - |
| K3826_RS22610 (4650678) | 4650678..4651145 | - | 468 | WP_141021544.1 | hypothetical protein | - |
| K3826_RS22615 (4651187) | 4651187..4651556 | - | 370 | Protein_4448 | ISAs1 family transposase | - |
| K3826_RS22620 (4651608) | 4651608..4652093 | + | 486 | WP_220722009.1 | hypothetical protein | - |
| K3826_RS22635 (4652445) | 4652445..4652855 | - | 411 | Protein_4450 | RHS repeat protein | - |
| K3826_RS22640 (4652853) | 4652853..4653260 | + | 408 | Protein_4451 | hypothetical protein | - |
| K3826_RS22645 (4653258) | 4653258..4654226 | - | 969 | Protein_4452 | RHS element protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|