MGE detailed information
MGE type: Prophage MGE length: 28425 bp
Accession: NZ_CP081007 Location: 4456413..4484837 Organism: Escherichia coli strain XL1-Blue Replicon: chromosome
Accession: NZ_CP081007 Location: 4456413..4484837 Organism: Escherichia coli strain XL1-Blue Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3826_RS21365 (4451494) | 4451494..4451973 | + | 480 | WP_001236645.1 | protein YkfM | - |
| K3826_RS21370 (4452110) | 4452110..4452895 | - | 786 | WP_001086141.1 | lipoprotein | - |
| K3826_RS21380 (4453432) | 4453432..4454163 | - | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| K3826_RS21385 (4454228) | 4454228..4454695 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| K3826_RS21390 (4454692) | 4454692..4455414 | - | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| K3826_RS21395 (4455448) | 4455448..4456203 | + | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| K3826_RS21400 (4456275) | 4456275..4457633 | + | 1359 | WP_000644685.1 | Toxic protein SymE | VF |
| K3826_RS21405 (4457681) | 4457681..4458277 | - | 597 | Protein_4211 | methyltransferase domain-containing protein | - |
| K3826_RS21410 (4458308) | 4458308..4459108 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| K3826_RS21415 (4459349) | 4459349..4460263 | + | 915 | WP_000648572.1 | Putative DNA repair helicase RadD | VF |
| K3826_RS21420 (4460260) | 4460260..4461063 | - | 804 | WP_000997010.1 | 2,5-didehydrogluconate reductase DkgB | - |
| K3826_RS21435 (4461574) | 4461574..4462338 | - | 765 | Protein_4215 | exonuclease | - |
| K3826_RS21440 (4462431) | 4462431..4462622 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| K3826_RS21445 (4462619) | 4462619..4462807 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| K3826_RS21450 (4463375) | 4463375..4463593 | - | 219 | WP_001171942.1 | protein YdfC | - |
| K3826_RS22880 (4463623) | 4463623..4463751 | - | 129 | WP_000344964.1 | protein YdfB | - |
| K3826_RS21455 (4463753) | 4463753..4463908 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| K3826_RS21460 (4464075) | 4464075..4464482 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| K3826_RS21465 (4464566) | 4464566..4464796 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| K3826_RS21470 (4464780) | 4464780..4465058 | + | 279 | Protein_4223 | hypothetical protein | - |
| K3826_RS21475 (4465093) | 4465093..4465242 | + | 150 | WP_011443592.1 | protein YdfW | - |
| K3826_RS21480 (4465679) | 4465679..4466011 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| K3826_RS21485 (4466214) | 4466214..4466519 | - | 306 | WP_001326990.1 | protein YdfV | - |
| K3826_RS21490 (4466544) | 4466544..4466783 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| K3826_RS21495 (4466783) | 4466783..4467070 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| K3826_RS21500 (4467142) | 4467142..4467297 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| K3826_RS21505 (4467514) | 4467514..4467765 | + | 252 | WP_000980994.1 | protein Rem | - |
| K3826_RS21510 (4467832) | 4467832..4468110 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| K3826_RS21515 (4468112) | 4468112..4469161 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| K3826_RS21520 (4469175) | 4469175..4469927 | + | 753 | WP_001047135.1 | antitermination protein | - |
| K3826_RS21525 (4470205) | 4470205..4470294 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| K3826_RS21530 (4470349) | 4470349..4470561 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| K3826_RS21535 (4470862) | 4470862..4471077 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| K3826_RS21540 (4471441) | 4471441..4471611 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| K3826_RS21545 (4471831) | 4471831..4472046 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| K3826_RS21550 (4472051) | 4472051..4472362 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| K3826_RS21555 (4472359) | 4472359..4472892 | + | 534 | WP_001092971.1 | lysozyme | - |
| K3826_RS21560 (4472889) | 4472889..4473386 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| K3826_RS21565 (4473749) | 4473749..4473961 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| K3826_RS21570 (4473972) | 4473972..4474160 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| K3826_RS21575 (4474163) | 4474163..4474228 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| K3826_RS21580 (4474307) | 4474307..4474462 | + | 156 | WP_001309517.1 | protein YnfN | - |
| K3826_RS21585 (4474634) | 4474634..4474807 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| K3826_RS21590 (4474959) | 4474959..4475369 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| K3826_RS21595 (4475427) | 4475427..4475660 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| K3826_RS21600 (4476192) | 4476192..4476326 | - | 135 | Protein_4249 | IS3 family transposase | - |
| K3826_RS21605 (4477001) | 4477001..4477189 | + | 189 | WP_000131420.1 | hypothetical protein | - |
| K3826_RS21610 (4477792) | 4477792..4478205 | + | 414 | WP_000483319.1 | hypothetical protein | - |
| K3826_RS21615 (4478380) | 4478380..4478775 | + | 396 | WP_000491615.1 | polymer-forming cytoskeletal protein | - |
| K3826_RS21620 (4478939) | 4478939..4479352 | + | 414 | WP_001351580.1 | hypothetical protein | - |
| K3826_RS21625 (4479462) | 4479462..4480523 | + | 1062 | WP_001092154.1 | EAL domain-containing protein | - |
| K3826_RS21630 (4481114) | 4481114..4484122 | - | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| K3826_RS21635 (4484286) | 4484286..4484837 | + | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| K3826_RS21640 (4484853) | 4484853..4486949 | + | 2097 | WP_000422420.1 | hypothetical protein | - |
| K3826_RS21645 (4487328) | 4487328..4487402 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| K3826_RS21650 (4487636) | 4487636..4487893 | - | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| K3826_RS21655 (4488177) | 4488177..4488326 | - | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| K3826_RS21660 (4488727) | 4488727..4489038 | + | 312 | WP_000802277.1 | hypothetical protein | - |
| K3826_RS21665 (4489219) | 4489219..4489305 | - | 87 | Protein_4262 | endonuclease | - |
| K3826_RS21670 (4489503) | 4489503..4489691 | - | 189 | WP_001345829.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|