MGE detailed information
MGE type: Genomic_island MGE length: 20932 bp
Accession: NZ_CP080620 Location: 950338..971269 Organism: Escherichia coli strain TOP10 Replicon: chromosome
Accession: NZ_CP080620 Location: 950338..971269 Organism: Escherichia coli strain TOP10 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K3F56_RS04415 (946170) | 946170..947501 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| K3F56_RS04420 (947523) | 947523..948512 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| K3F56_RS04425 (948611) | 948611..949549 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| K3F56_RS04430 (949864) | 949864..950082 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| K3F56_RS04435 (950338) | 950338..950877 | + | 540 | WP_000675733.1 | protein YhaB | - |
| K3F56_RS04440 (950899) | 950899..952086 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| K3F56_RS04450 (953109) | 953109..954254 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| K3F56_RS04455 (954351) | 954351..955241 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| K3F56_RS04460 (955271) | 955271..956041 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| K3F56_RS04465 (956057) | 956057..957391 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| K3F56_RS04470 (957766) | 957766..959337 | + | 1572 | WP_001273747.1 | galactarate dehydratase | - |
| K3F56_RS04475 (959486) | 959486..959821 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| K3F56_RS04480 (959821) | 959821..960285 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| K3F56_RS04485 (960340) | 960340..961149 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| K3F56_RS04490 (961398) | 961398..962678 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| K3F56_RS04495 (962701) | 962701..963174 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| K3F56_RS04500 (963185) | 963185..963556 | + | 372 | Protein_892 | PTS sugar transporter subunit IIC | - |
| K3F56_RS04505 (963552) | 963552..964109 | + | 558 | Protein_893 | amidohydrolase family protein | - |
| K3F56_RS04510 (964460) | 964460..965614 | + | 1155 | WP_001114869.1 | AgaS family sugar isomerase | - |
| K3F56_RS04515 (965627) | 965627..966487 | + | 861 | WP_000022766.1 | tagatose-bisphosphate aldolase subunit KbaY | - |
| K3F56_RS04520 (966654) | 966654..967130 | + | 477 | WP_000203711.1 | PTS galactosamine transporter subunit IIB | - |
| K3F56_RS04525 (967169) | 967169..967972 | + | 804 | WP_000544489.1 | PTS galactosamine transporter subunit IIC | - |
| K3F56_RS04530 (967962) | 967962..968753 | + | 792 | WP_000534347.1 | PTS galactosamine transporter subunit IID | - |
| K3F56_RS04535 (968754) | 968754..969509 | + | 756 | WP_001311150.1 | galactosamine-6-phosphate isomerase | - |
| K3F56_RS04540 (969910) | 969910..970494 | + | 585 | WP_001045432.1 | fimbrial protein | - |
| K3F56_RS04545 (970574) | 970574..971269 | + | 696 | WP_000044775.1 | hypothetical protein | VF |
| K3F56_RS04550 (971298) | 971298..973814 | + | 2517 | WP_001355538.1 | fimbria/pilus outer membrane usher protein | - |
| K3F56_RS04555 (973825) | 973825..974916 | + | 1092 | WP_000816992.1 | fimbrial protein | - |
| K3F56_RS04560 (974959) | 974959..975819 | - | 861 | WP_000809262.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|