MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 134627 bp
Accession: NZ_CP080462 Location: 2442417..2577043 Organism: Vibrio cholerae strain ICDC-VC702 Replicon: chromosome
Accession: NZ_CP080462 Location: 2442417..2577043 Organism: Vibrio cholerae strain ICDC-VC702 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K1T74_RS11200 | 2438792..2441365 | - | 2574 | WP_001235055.1 | ATP-dependent chaperone ClpB | - |
| K1T74_RS11205 | 2441490..2442212 | - | 723 | WP_220105779.1 | peptidoglycan editing factor PgeF | - |
| K1T74_RS11210 | 2442215..2443189 | - | 975 | WP_000941106.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| K1T74_RS11215 | 2443344..2444069 | + | 726 | WP_000877197.1 | outer membrane protein assembly factor BamD | - |
| K1T74_RS11220 | 2444471..2444797 | + | 327 | WP_000700176.1 | ribosome-associated translation inhibitor RaiA | - |
| K1T74_RS11225 | 2445036..2446211 | + | 1176 | WP_069504402.1 | prephenate dehydratase | - |
| K1T74_RS11230 | 2446393..2447433 | + | 1041 | WP_000595744.1 | PotD/PotF family extracellular solute-binding protein | - |
| K1T74_RS11235 | 2447417..2449792 | + | 2376 | WP_188372192.1 | biofilm architecture maintenance protein MbaA | - |
| K1T74_RS11240 | 2449779..2450264 | + | 486 | WP_001953645.1 | inosine/xanthosine triphosphatase | - |
| K1T74_RS11245 | 2450342..2450653 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| K1T74_RS11250 | 2450708..2452654 | - | 1947 | WP_220105780.1 | murein transglycosylase | - |
| K1T74_RS11255 | 2453015..2454682 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| K1T74_RS11260 | 2454853..2455224 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| K1T74_RS11265 | 2455291..2456418 | - | 1128 | WP_000257624.1 | hypothetical protein | VF |
| K1T74_RS11270 | 2456431..2457504 | - | 1074 | WP_000747931.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| K1T74_RS11275 | 2457746..2459422 | + | 1677 | WP_000364250.1 | hypothetical protein | VF |
| K1T74_RS11280 | 2459432..2460145 | + | 714 | WP_000947378.1 | hypothetical protein | VF |
| K1T74_RS11285 | 2460172..2461164 | - | 993 | WP_002051276.1 | beta-N-acetylhexosaminidase | - |
| K1T74_RS11290 | 2461269..2462381 | + | 1113 | WP_116671793.1 | anhydro-N-acetylmuramic acid kinase | - |
| K1T74_RS11295 | 2462399..2463322 | + | 924 | WP_114772814.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| K1T74_RS11300 | 2463346..2465142 | - | 1797 | WP_220106260.1 | sodium:proton antiporter | - |
| K1T74_RS11305 | 2465161..2465502 | - | 342 | WP_220105781.1 | DUF2799 domain-containing protein | - |
| K1T74_RS11310 | 2465755..2467239 | + | 1485 | WP_000964318.1 | carbon starvation protein A | - |
| K1T74_RS11315 | 2467376..2468338 | - | 963 | WP_220105782.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| K1T74_RS11320 | 2468373..2468807 | - | 435 | WP_154172485.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| K1T74_RS11325 | 2468970..2469485 | - | 516 | WP_000071973.1 | hypothetical protein | VF |
| K1T74_RS11330 | 2469501..2472350 | - | 2850 | WP_220105783.1 | isoleucine--tRNA ligase | - |
| K1T74_RS11335 | 2472381..2473349 | - | 969 | WP_220105784.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| K1T74_RS11340 | 2473418..2474980 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| K1T74_RS11345 | 2475238..2475498 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| K1T74_RS11350 | 2475570..2475869 | - | 300 | WP_167547312.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| K1T74_RS11355 | 2476092..2476982 | - | 891 | WP_000018876.1 | hypothetical protein | VF |
| K1T74_RS11360 | 2477376..2478524 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| K1T74_RS11365 | 2478616..2479467 | - | 852 | WP_001250352.1 | thymidylate synthase | - |
| K1T74_RS11370 | 2479477..2480292 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| K1T74_RS11375 | 2480321..2481115 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| K1T74_RS11380 | 2481125..2483371 | - | 2247 | WP_000952227.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| K1T74_RS11385 | 2483374..2483892 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| K1T74_RS11390 | 2484523..2485188 | + | 666 | WP_000801224.1 | DNA mismatch repair endonuclease MutH | - |
| K1T74_RS11395 | 2485405..2486439 | + | 1035 | WP_001200439.1 | NADP(H)-dependent aldo-keto reductase | - |
| K1T74_RS11400 | 2486477..2486728 | - | 252 | WP_220105785.1 | hypothetical protein | - |
| K1T74_RS11405 | 2487306..2488640 | - | 1335 | WP_000107102.1 | hypothetical protein | VF |
| K1T74_RS11410 | 2488914..2490446 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| K1T74_RS11420 | 2491745..2493058 | - | 1314 | WP_002043162.1 | branched-chain amino acid transport system II carrier protein | - |
| K1T74_RS11425 | 2493367..2494089 | + | 723 | WP_220105786.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| K1T74_RS11430 | 2494177..2495448 | + | 1272 | WP_220105787.1 | ATP-dependent RNA helicase SrmB | - |
| K1T74_RS11435 | 2495570..2497159 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| K1T74_RS11440 | 2497416..2498063 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| K1T74_RS11445 | 2498181..2498432 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| K1T74_RS11450 | 2498488..2499357 | + | 870 | WP_031500537.1 | hypothetical protein | - |
| K1T74_RS11455 | 2499344..2500006 | + | 663 | WP_148831192.1 | DUF6475 domain-containing protein | - |
| K1T74_RS11460 | 2499993..2500541 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| K1T74_RS11465 | 2500538..2500837 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| K1T74_RS11470 | 2500834..2501367 | + | 534 | WP_000566753.1 | FlhC family transcriptional regulator | - |
| K1T74_RS11475 | 2501425..2501856 | + | 432 | WP_220105788.1 | entry exclusion protein EexS | - |
| K1T74_RS11480 | 2501889..2505458 | - | 3570 | WP_220105789.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| K1T74_RS11485 | 2505462..2506850 | - | 1389 | WP_220105790.1 | conjugal transfer protein TraH | - |
| K1T74_RS11490 | 2506853..2507797 | - | 945 | WP_220105791.1 | thioredoxin family protein | - |
| K1T74_RS11495 | 2507924..2513653 | - | 5730 | WP_220105792.1 | ATP-binding protein | - |
| K1T74_RS11500 | 2513788..2514495 | - | 708 | WP_220105793.1 | hypothetical protein | - |
| K1T74_RS11505 | 2514585..2515658 | - | 1074 | WP_220105794.1 | primase-helicase zinc-binding domain-containing protein | - |
| K1T74_RS11510 | 2515750..2516091 | - | 342 | WP_022614434.1 | hypothetical protein | - |
| K1T74_RS11515 | 2516091..2516588 | - | 498 | WP_054104231.1 | DNA repair protein RadC | - |
| K1T74_RS11520 | 2516672..2518327 | - | 1656 | WP_220105795.1 | VWA domain-containing protein | - |
| K1T74_RS11525 | 2518397..2518837 | - | 441 | WP_022614431.1 | hypothetical protein | - |
| K1T74_RS11530 | 2518899..2519852 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| K1T74_RS11535 | 2519951..2520718 | - | 768 | WP_220105796.1 | hypothetical protein | - |
| K1T74_RS11540 | 2520718..2521677 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| K1T74_RS11545 | 2521887..2522903 | - | 1017 | WP_032469937.1 | YqaJ viral recombinase family protein | - |
| K1T74_RS11550 | 2522964..2523107 | - | 144 | WP_001963282.1 | hypothetical protein | - |
| K1T74_RS11555 | 2523189..2524007 | - | 819 | WP_220105797.1 | phage recombination protein Bet | - |
| K1T74_RS11560 | 2524087..2524506 | - | 420 | WP_012368368.1 | single-stranded DNA-binding protein | - |
| K1T74_RS11565 | 2524522..2524848 | - | 327 | WP_023584057.1 | hypothetical protein | - |
| K1T74_RS11570 | 2525216..2525818 | + | 603 | WP_220105798.1 | hypothetical protein | - |
| K1T74_RS11575 | 2525919..2526614 | + | 696 | WP_220105799.1 | endonuclease | - |
| K1T74_RS11580 | 2526615..2527076 | - | 462 | WP_220105800.1 | hypothetical protein | - |
| K1T74_RS11585 | 2527081..2527995 | - | 915 | WP_220105801.1 | hypothetical protein | - |
| K1T74_RS11590 | 2528304..2531996 | - | 3693 | WP_220105802.1 | conjugal transfer protein TraN | - |
| K1T74_RS11595 | 2531999..2533027 | - | 1029 | WP_161545421.1 | TraU family protein | - |
| K1T74_RS11600 | 2533011..2534135 | - | 1125 | WP_220106261.1 | TrbC family F-type conjugative pilus assembly protein | - |
| K1T74_RS11605 | 2534146..2534658 | - | 513 | WP_193021830.1 | S26 family signal peptidase | - |
| K1T74_RS11610 | 2534642..2534989 | - | 348 | WP_011788500.1 | hypothetical protein | - |
| K1T74_RS11615 | 2534982..2537381 | - | 2400 | WP_220105803.1 | type IV secretion system protein TraC | - |
| K1T74_RS11620 | 2537381..2538073 | - | 693 | WP_001228924.1 | DsbC family protein | - |
| K1T74_RS11625 | 2538205..2539143 | - | 939 | WP_220105804.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| K1T74_RS11630 | 2539136..2539927 | - | 792 | WP_220106262.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| K1T74_RS11635 | 2540148..2540534 | - | 387 | WP_004249359.1 | TraA family conjugative transfer protein | - |
| K1T74_RS11640 | 2540531..2541103 | - | 573 | WP_220105805.1 | TraV family lipoprotein | - |
| K1T74_RS11645 | 2541178..2542467 | - | 1290 | WP_014703136.1 | TraB/VirB10 family protein | - |
| K1T74_RS11650 | 2542470..2543366 | - | 897 | WP_220106263.1 | type-F conjugative transfer system secretin TraK | - |
| K1T74_RS11655 | 2543350..2543976 | - | 627 | WP_023584040.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| K1T74_RS11660 | 2543973..2544254 | - | 282 | WP_206624354.1 | type IV conjugative transfer system protein TraL | - |
| K1T74_RS11665 | 2544440..2545258 | + | 819 | WP_023584037.1 | hypothetical protein | - |
| K1T74_RS11670 | 2545318..2545953 | - | 636 | WP_023584036.1 | DUF4400 domain-containing protein | - |
| K1T74_RS11675 | 2545940..2546500 | - | 561 | WP_023584035.1 | hypothetical protein | - |
| K1T74_RS11680 | 2546510..2548330 | - | 1821 | WP_023584034.1 | conjugative transfer system coupling protein TraD | - |
| K1T74_RS11685 | 2548379..2550529 | - | 2151 | WP_220105806.1 | MobH family relaxase | - |
| K1T74_RS11690 | 2550649..2551122 | - | 474 | WP_001145412.1 | hypothetical protein | - |
| K1T74_RS19740 | 2551122..2551403 | - | 282 | WP_023584032.1 | hypothetical protein | - |
| K1T74_RS11700 | 2551565..2554642 | - | 3078 | WP_023584031.1 | DEAD/DEAH box helicase family protein | - |
| K1T74_RS11705 | 2554652..2556529 | - | 1878 | WP_023584030.1 | site-specific DNA-methyltransferase | - |
| K1T74_RS11710 | 2556603..2557289 | - | 687 | WP_023584029.1 | DUF4391 domain-containing protein | - |
| K1T74_RS11715 | 2557293..2560625 | - | 3333 | WP_220105807.1 | SNF2-related protein | - |
| K1T74_RS11720 | 2560663..2561598 | - | 936 | WP_220105808.1 | WYL domain-containing protein | - |
| K1T74_RS11725 | 2561916..2562215 | - | 300 | WP_023584026.1 | hypothetical protein | - |
| K1T74_RS11730 | 2562303..2563208 | - | 906 | WP_023584025.1 | 3'-5' exonuclease | - |
| K1T74_RS11735 | 2563848..2564297 | + | 450 | WP_023584024.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| K1T74_RS11740 | 2564305..2565573 | + | 1269 | WP_220105809.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| K1T74_RS11745 | 2565584..2566027 | - | 444 | WP_023584022.1 | conjugative transfer protein MobI(A/C) | - |
| K1T74_RS11750 | 2566492..2567466 | + | 975 | WP_220105810.1 | ParM/StbA family protein | - |
| K1T74_RS11755 | 2567469..2567738 | + | 270 | WP_220106269.1 | hypothetical protein | - |
| K1T74_RS11760 | 2567740..2568981 | + | 1242 | WP_008305558.1 | hypothetical protein ; Integrase | Integrase |
| K1T74_RS11765 | 2569250..2569462 | + | 213 | WP_023584020.1 | hypothetical protein | - |
| K1T74_RS11770 | 2569515..2569709 | - | 195 | WP_039995236.1 | DNA-binding protein | - |
| K1T74_RS11775 | 2570450..2572507 | + | 2058 | WP_000160067.1 | hypothetical protein | VF |
| K1T74_RS11780 | 2572496..2572945 | - | 450 | WP_000214241.1 | hypothetical protein | VF |
| K1T74_RS11785 | 2572942..2573349 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| K1T74_RS11790 | 2573460..2573963 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| K1T74_RS11795 | 2573947..2574474 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| K1T74_RS11800 | 2574707..2576761 | + | 2055 | WP_001111411.1 | hypothetical protein | VF |
| K1T74_RS11805 | 2576869..2577882 | + | 1014 | WP_000421320.1 | peptidase U32 family protein | - |
| K1T74_RS11810 | 2577894..2578772 | + | 879 | WP_000872505.1 | U32 family peptidase | - |
| K1T74_RS11815 | 2578831..2580168 | - | 1338 | WP_220105811.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| K1T74_RS11820 | 2580211..2580618 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
| K1T74_RS11825 | 2580717..2581628 | - | 912 | WP_001883460.1 | lipoprotein NlpI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|