MGE detailed information
MGE type: Prophage MGE length: 58436 bp
Accession: NZ_CP079891 Location: 1180941..1239376 Organism: Escherichia fergusonii strain 5zf15-2-1 Replicon: chromosome
Accession: NZ_CP079891 Location: 1180941..1239376 Organism: Escherichia fergusonii strain 5zf15-2-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYD87_RS05990 () | 1176477..1177934 | + | 1458 | WP_046081854.1 | TrkH family potassium uptake protein | - |
| KYD87_RS05995 () | 1178043..1178894 | + | 852 | WP_000218044.1 | protein deglycase HchA | - |
| KYD87_RS06000 () | 1179651..1179938 | - | 288 | WP_223666266.1 | hypothetical protein | - |
| KYD87_RS06005 () | 1179949..1180653 | - | 705 | WP_196112865.1 | tail fiber domain-containing protein | - |
| KYD87_RS06010 () | 1180663..1180944 | - | 282 | WP_000654140.1 | hypothetical protein | - |
| KYD87_RS06015 () | 1180941..1183340 | - | 2400 | WP_223666267.1 | prophage tail fiber N-terminal domain-containing protein | - |
| KYD87_RS06020 () | 1183405..1184004 | - | 600 | WP_001228228.1 | hypothetical protein | VF |
| KYD87_RS06025 () | 1184072..1187551 | - | 3480 | WP_223666268.1 | host specificity protein J | - |
| KYD87_RS06030 () | 1187612..1188259 | - | 648 | WP_021538849.1 | tail assembly protein | - |
| KYD87_RS06035 () | 1188157..1188900 | - | 744 | WP_078207401.1 | C40 family peptidase | - |
| KYD87_RS06040 () | 1188905..1189603 | - | 699 | WP_078207402.1 | phage minor tail protein L | - |
| KYD87_RS06045 () | 1189603..1189902 | - | 300 | WP_134804889.1 | phage tail protein | - |
| KYD87_RS06050 () | 1189937..1193176 | - | 3240 | WP_078207403.1 | phage tail tape measure protein | - |
| KYD87_RS06055 () | 1193225..1193566 | - | 342 | WP_000394908.1 | zinc ribbon domain-containing protein | - |
| KYD87_RS06060 () | 1193624..1193914 | - | 291 | WP_023142590.1 | DUF4035 domain-containing protein | - |
| KYD87_RS06065 () | 1193926..1194297 | - | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| KYD87_RS06070 () | 1194312..1195016 | - | 705 | WP_078207404.1 | immunoglobulin domain-containing protein | - |
| KYD87_RS06075 () | 1195077..1195421 | - | 345 | WP_078207405.1 | DUF3168 domain-containing protein | - |
| KYD87_RS06080 () | 1195418..1195867 | - | 450 | WP_001312916.1 | HK97 gp10 family phage protein | - |
| KYD87_RS06085 () | 1195864..1196202 | - | 339 | WP_001147820.1 | phage head closure protein | - |
| KYD87_RS06090 () | 1196211..1196516 | - | 306 | WP_000983037.1 | head-tail connector protein | - |
| KYD87_RS06095 () | 1196528..1196716 | - | 189 | WP_000601355.1 | hypothetical protein | - |
| KYD87_RS06100 () | 1196767..1197972 | - | 1206 | WP_078207406.1 | phage major capsid protein | - |
| KYD87_RS06105 () | 1197987..1198637 | - | 651 | WP_001193632.1 | HK97 family phage prohead protease | - |
| KYD87_RS06110 () | 1198615..1199856 | - | 1242 | WP_053286221.1 | phage portal protein | - |
| KYD87_RS06115 () | 1199856..1200038 | - | 183 | WP_045171680.1 | hypothetical protein | - |
| KYD87_RS06120 () | 1200050..1200784 | - | 735 | Protein_1215 | terminase large subunit | - |
| KYD87_RS06125 () | 1201302..1202963 | - | 1662 | WP_000127864.1 | terminase large subunit | - |
| KYD87_RS06130 () | 1202947..1203303 | - | 357 | WP_001353110.1 | phage terminase small subunit P27 family | - |
| KYD87_RS06135 () | 1203423..1203608 | - | 186 | WP_001251184.1 | hypothetical protein | - |
| KYD87_RS06140 () | 1203592..1204032 | - | 441 | WP_047662519.1 | HNH endonuclease | - |
| KYD87_RS06145 () | 1204032..1204328 | - | 297 | WP_021557926.1 | head-tail connector protein | - |
| KYD87_RS06150 () | 1204325..1204663 | - | 339 | WP_086619362.1 | phage head closure protein | - |
| KYD87_RS06155 () | 1204660..1205883 | - | 1224 | WP_086619365.1 | phage portal protein | - |
| KYD87_RS06160 () | 1205885..1206445 | - | 561 | WP_086619368.1 | HK97 family phage prohead protease | - |
| KYD87_RS06165 () | 1206500..1207669 | - | 1170 | WP_086619370.1 | phage major capsid protein | - |
| KYD87_RS06170 () | 1208043..1208192 | - | 150 | WP_223666269.1 | hypothetical protein | - |
| KYD87_RS06175 () | 1208238..1208519 | - | 282 | WP_181465379.1 | PerC family transcriptional regulator | - |
| KYD87_RS06180 () | 1208535..1208960 | - | 426 | WP_163397195.1 | single-stranded DNA-binding protein | - |
| KYD87_RS06185 () | 1208957..1209208 | - | 252 | WP_223666270.1 | hypothetical protein | - |
| KYD87_RS06190 () | 1209410..1210825 | - | 1416 | WP_223666271.1 | helicase RepA family protein | - |
| KYD87_RS06195 () | 1210822..1211121 | - | 300 | WP_223666272.1 | DUF4222 domain-containing protein | - |
| KYD87_RS06200 () | 1211126..1211326 | - | 201 | WP_223666273.1 | hypothetical protein | - |
| KYD87_RS06205 () | 1211319..1211552 | - | 234 | WP_103743917.1 | hypothetical protein | - |
| KYD87_RS06210 () | 1211545..1211784 | - | 240 | WP_223666274.1 | hypothetical protein | - |
| KYD87_RS06215 () | 1211774..1211980 | - | 207 | WP_223666275.1 | host cell division inhibitor Icd-like protein | - |
| KYD87_RS06220 () | 1212180..1212359 | + | 180 | WP_105464564.1 | YlcI/YnfO family protein | - |
| KYD87_RS06225 () | 1212528..1212878 | - | 351 | WP_223666276.1 | hypothetical protein | - |
| KYD87_RS06230 () | 1213010..1213588 | - | 579 | WP_001038671.1 | BRO family protein | - |
| KYD87_RS06235 () | 1213646..1213924 | - | 279 | WP_001168899.1 | AlpA family phage regulatory protein | - |
| KYD87_RS06240 () | 1213988..1214209 | - | 222 | WP_000614825.1 | AlpA family phage regulatory protein | - |
| KYD87_RS06245 () | 1214187..1215410 | - | 1224 | WP_001197052.1 | Chorismatase ; Integrase | Integrase |
| KYD87_RS06250 () | 1215581..1216609 | - | 1029 | Protein_1241 | terminase large subunit | - |
| KYD87_RS06255 () | 1216609..1217091 | - | 483 | WP_001317918.1 | phage terminase small subunit P27 family | - |
| KYD87_RS06260 () | 1217240..1217590 | - | 351 | WP_001532429.1 | HNH endonuclease signature motif containing protein | - |
| KYD87_RS06265 () | 1217729..1218268 | + | 540 | WP_001532432.1 | YfbU family protein | - |
| KYD87_RS06270 () | 1218274..1218540 | - | 267 | WP_001100260.1 | hypothetical protein | - |
| KYD87_RS06275 () | 1218758..1218943 | - | 186 | WP_001228685.1 | Rz1 family lipoprotein | - |
| KYD87_RS06285 () | 1219160..1219693 | - | 534 | WP_000992100.1 | lysozyme | - |
| KYD87_RS06290 () | 1219757..1220107 | - | 351 | WP_000193280.1 | YdfR family protein | - |
| KYD87_RS06295 () | 1220112..1220327 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| KYD87_RS06320 () | 1221123..1221812 | - | 690 | WP_001064894.1 | bacteriophage antitermination protein Q | - |
| KYD87_RS06325 () | 1221809..1222174 | - | 366 | WP_000140004.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KYD87_RS06330 () | 1222175..1223230 | - | 1056 | WP_223666277.1 | DUF968 domain-containing protein | - |
| KYD87_RS06335 () | 1223232..1223510 | - | 279 | WP_078207408.1 | hypothetical protein | - |
| KYD87_RS06340 () | 1223577..1223837 | - | 261 | WP_000687435.1 | hypothetical protein | - |
| KYD87_RS06345 () | 1224058..1224213 | - | 156 | WP_000813255.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 1224225..1224283 | + | 59 | - | - | Antitoxin Detail |
| KYD87_RS06350 () | 1224456..1224632 | - | 177 | WP_194285216.1 | hypothetical protein | - |
| KYD87_RS06355 () | 1224625..1224807 | - | 183 | WP_001224672.1 | hypothetical protein | - |
| KYD87_RS06360 () | 1224901..1225257 | - | 357 | WP_039022684.1 | hypothetical protein | - |
| KYD87_RS06365 () | 1225315..1225737 | - | 423 | WP_078207410.1 | DUF977 family protein | - |
| KYD87_RS06370 () | 1225753..1226523 | - | 771 | WP_039022663.1 | DUF1627 domain-containing protein | - |
| KYD87_RS06375 () | 1226556..1227017 | - | 462 | WP_239637900.1 | replication protein P | - |
| KYD87_RS06380 () | 1227010..1228050 | - | 1041 | WP_039022662.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| KYD87_RS06385 () | 1228022..1228573 | - | 552 | WP_000705377.1 | toxin YdaT family protein | - |
| KYD87_RS06390 () | 1228557..1228784 | - | 228 | WP_000476986.1 | Cro/CI family transcriptional regulator | - |
| KYD87_RS06395 () | 1228862..1229269 | + | 408 | WP_001003379.1 | helix-turn-helix domain-containing protein | - |
| KYD87_RS06400 () | 1229460..1229615 | + | 156 | WP_000379557.1 | DUF1391 family protein | - |
| KYD87_RS25530 () | 1229617..1229745 | + | 129 | WP_263300187.1 | protein YdfB | - |
| KYD87_RS06405 () | 1229775..1229993 | + | 219 | WP_042095430.1 | protein YdfC | - |
| KYD87_RS06410 () | 1230129..1230584 | - | 456 | WP_042042556.1 | hypothetical protein | - |
| KYD87_RS06415 () | 1231123..1231311 | + | 189 | WP_078207413.1 | cell division inhibition protein DicB | - |
| KYD87_RS06420 () | 1231308..1231499 | + | 192 | WP_001070255.1 | DUF1482 family protein | - |
| KYD87_RS06425 () | 1231734..1232099 | + | 366 | Protein_1272 | exonuclease | - |
| KYD87_RS06430 () | 1233510..1234034 | + | 525 | WP_158163724.1 | 3'-5' exonuclease | - |
| KYD87_RS06435 () | 1234093..1234296 | + | 204 | WP_000096344.1 | DUF4224 domain-containing protein | - |
| KYD87_RS06440 () | 1234296..1235346 | + | 1051 | Protein_1275 | Tyrosine recombinase XerC ; Integrase | Integrase |
| KYD87_RS06450 () | 1235557..1236354 | + | 798 | WP_000598929.1 | DgsA anti-repressor MtfA | - |
| KYD87_RS06460 () | 1236569..1237519 | - | 951 | WP_001010985.1 | HTH-type transcriptional regulator Cbl | - |
| KYD87_RS06465 () | 1237621..1238538 | - | 918 | WP_001011449.1 | nitrogen assimilation transcriptional regulator NAC | - |
| KYD87_RS06475 () | 1239107..1239304 | + | 198 | Protein_1279 | Arm DNA-binding domain-containing protein | - |
| KYD87_RS06480 () | 1239964..1240284 | - | 321 | WP_001013541.1 | hypothetical protein | - |
| KYD87_RS06485 () | 1240296..1240754 | - | 459 | WP_125282644.1 | hypothetical protein | - |
| KYD87_RS06490 () | 1241544..1241993 | - | 450 | WP_046077359.1 | lysozyme inhibitor LprI family protein | - |
| KYD87_RS06495 () | 1241993..1242664 | - | 672 | WP_223666278.1 | hypothetical protein | - |
| KYD87_RS06500 () | 1242652..1242873 | - | 222 | WP_223666279.1 | hypothetical protein | - |
| KYD87_RS06505 () | 1242898..1243377 | - | 480 | WP_223666280.1 | Hcp family type VI secretion system effector | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|