MGE detailed information
MGE type: Conjugative plasmid MGE length: 118628 bp
Accession: NZ_CP079885 Location: 1..118628 Organism: Escherichia fergusonii strain 6S41-1 Replicon: plasmid p1-6S41-1
Accession: NZ_CP079885 Location: 1..118628 Organism: Escherichia fergusonii strain 6S41-1 Replicon: plasmid p1-6S41-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYC43_RS23055 (1) | 1..858 | + | 858 | WP_042634321.1 | incFII family plasmid replication initiator RepA | - |
| KYC43_RS23060 (1823) | 1823..2074 | + | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| KYC43_RS23065 (2071) | 2071..2166 | + | 96 | Protein_2 | relE | - |
| KYC43_RS23070 (2189) | 2189..3801 | - | 1613 | Protein_3 | IS66 family transposase ISEc23 | Transposase |
| KYC43_RS23075 (3832) | 3832..4182 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| KYC43_RS23080 (4179) | 4179..4604 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| KYC43_RS23085 (4691) | 4691..4897 | + | 207 | Protein_6 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KYC43_RS23090 (5259) | 5259..6467 | - | 1209 | WP_000198533.1 | IS91 family transposase ISSbo1 | Transposase |
| KYC43_RS23095 (6448) | 6448..6720 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| KYC43_RS23100 (6736) | 6736..9066 | + | 2331 | WP_223672106.1 | Serine protease pet autotransporter | VF |
| KYC43_RS23105 (9035) | 9035..10243 | - | 1209 | WP_001339197.1 | IS4 family transposase IS10R | Transposase |
| KYC43_RS23110 (10351) | 10351..11211 | + | 861 | Protein_11 | Serine protease EspP | VF |
| KYC43_RS23115 (11521) | 11521..11828 | + | 308 | Protein_12 | IS3 family transposase ISEc31 | Transposase |
| KYC43_RS23120 (11836) | 11836..12987 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| KYC43_RS23125 (13055) | 13055..13312 | - | 258 | Protein_14 | IS3 family transposase IS911 | Transposase |
| KYC43_RS23135 (13591) | 13591..13782 | - | 192 | Protein_15 | IS91 family transposase | - |
| KYC43_RS23140 (13953) | 13953..18086 | + | 4134 | WP_063085579.1 | Hemoglobin-binding protease hbp autotransporter | VF |
| KYC43_RS23145 (18195) | 18195..18586 | + | 392 | Protein_17 | peptide deformylase | - |
| KYC43_RS23150 (18633) | 18633..18734 | - | 102 | Protein_18 | resolvase | - |
| KYC43_RS23155 (18904) | 18904..20127 | - | 1224 | WP_223672107.1 | IS91 family transposase ISSbo1 | Transposase |
| KYC43_RS23160 (20137) | 20137..20325 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| KYC43_RS23165 (20527) | 20527..21936 | - | 1410 | Protein_21 | group II intron reverse transcriptase/maturase | - |
| KYC43_RS23170 (21979) | 21979..23166 | - | 1188 | Protein_22 | ISL3 family transposase ISCfr12 | Transposase |
| KYC43_RS23175 (23284) | 23284..23733 | - | 450 | WP_105910642.1 | AfaD family invasin | - |
| KYC43_RS23180 (23730) | 23730..26177 | - | 2448 | WP_094308965.1 | F1 capsule-anchoring protein | VF |
| KYC43_RS23185 (26193) | 26193..26954 | - | 762 | WP_074425405.1 | Chaperone protein caf1M | VF |
| KYC43_RS23190 (27095) | 27095..27598 | - | 504 | WP_157769469.1 | Fimbrial protein | VF |
| KYC43_RS23195 (28030) | 28030..28638 | + | 609 | WP_223672108.1 | IS481 family transposase ISErsp1 | Transposase |
| KYC43_RS23200 (28691) | 28691..29299 | + | 609 | Protein_28 | Serine protease pic autotransporter | VF |
| KYC43_RS23205 (29495) | 29495..29980 | + | 486 | WP_094308964.1 | hypothetical protein | - |
| KYC43_RS23210 (30194) | 30194..31024 | + | 831 | WP_112889124.1 | AraC family transcriptional regulator | - |
| KYC43_RS23215 (31155) | 31155..32111 | - | 957 | WP_112889123.1 | IS481 family transposase ISErsp1 | Transposase |
| KYC43_RS23220 (32074) | 32074..32526 | + | 453 | Protein_32 | IS110 family transposase ISEc21 | Transposase |
| KYC43_RS23225 (32543) | 32543..32851 | + | 309 | Protein_33 | integrase core domain-containing protein | - |
| KYC43_RS23230 (32881) | 32881..33090 | - | 210 | WP_094308932.1 | hypothetical protein | - |
| KYC43_RS23235 (33139) | 33139..33342 | - | 204 | WP_004150739.1 | HHA domain-containing protein | - |
| KYC43_RS23240 (33403) | 33403..33897 | - | 495 | WP_094313750.1 | DNA-binding protein | - |
| KYC43_RS23245 (33928) | 33928..34500 | - | 573 | WP_223672109.1 | hypothetical protein | - |
| KYC43_RS23250 (34505) | 34505..34753 | - | 249 | WP_065801593.1 | hypothetical protein | - |
| KYC43_RS23255 (35032) | 35032..36038 | - | 1007 | Protein_39 | IS110 family transposase ISEc11 | Transposase |
| KYC43_RS23260 (36595) | 36595..36849 | - | 255 | WP_095153353.1 | hypothetical protein | - |
| KYC43_RS23265 (36913) | 36913..37158 | - | 246 | WP_065801591.1 | hypothetical protein | - |
| KYC43_RS23270 (37193) | 37193..37609 | - | 417 | WP_023292131.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| KYC43_RS23275 (37606) | 37606..37836 | - | 231 | WP_223672110.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| KYC43_RS23280 (38155) | 38155..38415 | + | 261 | WP_032280099.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| KYC43_RS23285 (38441) | 38441..38698 | + | 258 | WP_199802185.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KYC43_RS23290 (38860) | 38860..39801 | - | 942 | WP_058820814.1 | hypothetical protein | - |
| KYC43_RS23295 (40036) | 40036..41436 | - | 1401 | WP_223672111.1 | ISNCY family transposase ISKpn21 | Transposase |
| KYC43_RS23300 (41713) | 41713..42138 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| KYC43_RS23305 (42135) | 42135..42485 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| KYC43_RS23310 (42516) | 42516..44129 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| KYC43_RS23315 (44161) | 44161..44511 | + | 351 | Protein_51 | IS1 family transposase IS1S | Transposase |
| KYC43_RS23320 (44526) | 44526..44786 | - | 261 | Protein_52 | Tn3 family transposase TnpR_ISMpo10 | Transposase |
| KYC43_RS23325 (44971) | 44971..45471 | - | 501 | Protein_53 | Tn3 family transposase ISEc63 | Transposase |
| KYC43_RS23330 (45635) | 45635..46201 | + | 567 | WP_223672112.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| KYC43_RS23335 (46229) | 46229..46939 | + | 711 | WP_001219114.1 | hypothetical protein | - |
| KYC43_RS23340 (46977) | 46977..47591 | - | 615 | WP_000160640.1 | TIR domain-containing protein | - |
| KYC43_RS23345 (47760) | 47760..48527 | + | 768 | WP_001159649.1 | hypothetical protein | VF |
| KYC43_RS23350 (48716) | 48716..52792 | - | 4077 | WP_223672113.1 | Serine protease SepA autotransporter | VF |
| KYC43_RS23355 (52990) | 52990..54152 | + | 1163 | Protein_59 | IS3 family transposase ISEhe3 | Transposase |
| KYC43_RS23360 (54302) | 54302..54454 | + | 153 | WP_001330798.1 | hypothetical protein | - |
| KYC43_RS23365 (54451) | 54451..54741 | + | 291 | WP_000990619.1 | hypothetical protein | - |
| KYC43_RS23370 (55514) | 55514..55804 | + | 291 | WP_021570624.1 | hypothetical protein | - |
| KYC43_RS23375 (55962) | 55962..56570 | + | 609 | WP_001375052.1 | hypothetical protein | - |
| KYC43_RS23380 (56638) | 56638..57420 | + | 783 | WP_011251351.1 | site-specific integrase | - |
| KYC43_RS23385 (57558) | 57558..57833 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| KYC43_RS23390 (57827) | 57827..58471 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| KYC43_RS23395 (58700) | 58700..59671 | + | 972 | WP_011251350.1 | plasmid segregation protein ParM | - |
| KYC43_RS23400 (59676) | 59676..60068 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| KYC43_RS23405 (60073) | 60073..61344 | - | 1272 | WP_000457496.1 | Y-family DNA polymerase | - |
| KYC43_RS23410 (61344) | 61344..61781 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KYC43_RS23415 (61778) | 61778..62026 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| KYC43_RS23420 (62444) | 62444..63346 | + | 903 | WP_223672115.1 | DUF1281 domain-containing protein | - |
| KYC43_RS23425 (63343) | 63343..63654 | + | 312 | WP_032317461.1 | hypothetical protein | - |
| KYC43_RS23430 (63731) | 63731..64414 | + | 684 | WP_063072991.1 | DNA methylase | - |
| KYC43_RS23435 (64415) | 64415..64636 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| KYC43_RS23440 (64617) | 64617..65084 | + | 468 | WP_223672102.1 | DUF1380 family protein | - |
| KYC43_RS23445 (65130) | 65130..65906 | + | 777 | WP_175120217.1 | hypothetical protein | - |
| KYC43_RS23450 (66323) | 66323..66748 | + | 426 | WP_069200721.1 | antirestriction protein | - |
| KYC43_RS23455 (66795) | 66795..67217 | + | 423 | WP_000271726.1 | DUF1380 family protein | - |
| KYC43_RS23460 (67214) | 67214..67405 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| KYC43_RS23465 (67677) | 67677..67925 | - | 249 | WP_077879799.1 | hypothetical protein | - |
| KYC43_RS23470 (68443) | 68443..68673 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| KYC43_RS23475 (68725) | 68725..70086 | + | 1362 | WP_000170675.1 | DUF3560 domain-containing protein | - |
| KYC43_RS23480 (70134) | 70134..70697 | + | 564 | WP_112889164.1 | class I SAM-dependent methyltransferase | - |
| KYC43_RS23485 (71297) | 71297..71503 | + | 207 | WP_000547945.1 | hypothetical protein | - |
| KYC43_RS23490 (71529) | 71529..72059 | + | 531 | WP_032214168.1 | single-stranded DNA-binding protein | - |
| KYC43_RS23495 (72115) | 72115..72348 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| KYC43_RS23500 (72412) | 72412..74370 | + | 1959 | WP_223672103.1 | ParB/RepB/Spo0J family partition protein | - |
| KYC43_RS23505 (74425) | 74425..74859 | + | 435 | WP_042634413.1 | conjugation system SOS inhibitor PsiB | - |
| KYC43_RS23510 (74856) | 74856..75642 | + | 787 | Protein_90 | plasmid SOS inhibition protein A | - |
| - (75587) | 75587..75804 | + | 218 | NuclAT_0 | - | - |
| - (75587) | 75587..75804 | + | 218 | NuclAT_0 | - | - |
| - (75587) | 75587..75804 | + | 218 | NuclAT_0 | - | - |
| - (75587) | 75587..75804 | + | 218 | NuclAT_0 | - | - |
| KYC43_RS23515 (75792) | 75792..75944 | + | 153 | Protein_91 | FlmC family protein | - |
| KYC43_RS23520 (75889) | 75889..76011 | + | 123 | WP_223163518.1 | Hok/Gef family protein | - |
| KYC43_RS23525 (76312) | 76312..76608 | - | 297 | Protein_93 | hypothetical protein | - |
| KYC43_RS23530 (76832) | 76832..77128 | + | 297 | WP_001272240.1 | hypothetical protein | - |
| KYC43_RS23535 (77234) | 77234..78055 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| KYC43_RS23540 (78352) | 78352..78942 | - | 591 | WP_223672104.1 | hypothetical protein | VF |
| KYC43_RS23545 (79275) | 79275..79658 | + | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| KYC43_RS23550 (79845) | 79845..80534 | + | 690 | WP_047402313.1 | conjugal transfer transcriptional regulator TraJ | - |
| KYC43_RS23555 (80627) | 80627..81028 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| KYC43_RS23560 (81061) | 81061..81423 | + | 363 | WP_000994784.1 | type IV conjugative transfer system pilin TraA | - |
| KYC43_RS23565 (81428) | 81428..81739 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| KYC43_RS23570 (81761) | 81761..82327 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| KYC43_RS23575 (82314) | 82314..83042 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| KYC43_RS23580 (83042) | 83042..84469 | + | 1428 | WP_047402310.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| KYC43_RS23585 (84459) | 84459..85046 | + | 588 | WP_000002772.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| KYC43_RS23590 (85033) | 85033..85353 | + | 321 | WP_001057283.1 | conjugal transfer protein TrbD | - |
| KYC43_RS23595 (85350) | 85350..85865 | + | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| KYC43_RS23600 (86000) | 86000..86221 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| KYC43_RS23605 (86381) | 86381..89008 | + | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| KYC43_RS23610 (89005) | 89005..89391 | + | 387 | WP_000099693.1 | type-F conjugative transfer system protein TrbI | - |
| KYC43_RS23615 (89388) | 89388..90020 | + | 633 | WP_042047196.1 | type-F conjugative transfer system protein TraW | - |
| KYC43_RS23620 (90017) | 90017..91009 | + | 993 | WP_042047198.1 | conjugal transfer pilus assembly protein TraU | - |
| KYC43_RS23625 (91018) | 91018..91656 | + | 639 | WP_042047200.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| KYC43_RS23630 (91653) | 91653..93461 | + | 1809 | WP_047402305.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| KYC43_RS23635 (93488) | 93488..93745 | + | 258 | WP_000864320.1 | conjugal transfer protein TrbE | - |
| KYC43_RS23640 (93738) | 93738..94481 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| KYC43_RS23645 (94495) | 94495..94836 | + | 342 | WP_047402303.1 | conjugal transfer protein TrbA | - |
| KYC43_RS23650 (94817) | 94817..95152 | - | 336 | WP_000415571.1 | hypothetical protein | - |
| KYC43_RS23655 (95233) | 95233..95517 | + | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| KYC43_RS23660 (95504) | 95504..96049 | + | 546 | WP_000059818.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| KYC43_RS23665 (96039) | 96039..96353 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| KYC43_RS23670 (96307) | 96307..96699 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| KYC43_RS23675 (96686) | 96686..98059 | + | 1374 | WP_000944325.1 | conjugal transfer pilus assembly protein TraH | - |
| KYC43_RS23680 (98056) | 98056..100878 | + | 2823 | WP_062873754.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| KYC43_RS23685 (100893) | 100893..101396 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| KYC43_RS23690 (101428) | 101428..102159 | + | 732 | WP_000850424.1 | conjugal transfer complement resistance protein TraT | - |
| KYC43_RS23695 (102362) | 102362..103099 | + | 738 | WP_000199900.1 | hypothetical protein | - |
| KYC43_RS23700 (103150) | 103150..105384 | + | 2235 | WP_086210965.1 | type IV conjugative transfer system coupling protein TraD | - |
| KYC43_RS23705 (105384) | 105384..110654 | + | 5271 | WP_223672105.1 | Multifunctional conjugation protein TraI | Relaxase |
| KYC43_RS23710 (110674) | 110674..111420 | + | 747 | WP_000205711.1 | conjugal transfer pilus acetylase TraX | - |
| KYC43_RS23715 (111479) | 111479..112339 | + | 861 | WP_000704522.1 | putative protein YcjY | VF |
| KYC43_RS23720 (112442) | 112442..113002 | + | 561 | WP_000840464.1 | fertility inhibition protein FinO | - |
| KYC43_RS23725 (113133) | 113133..113342 | + | 210 | WP_001297500.1 | hypothetical protein | - |
| KYC43_RS23730 (113754) | 113754..114380 | + | 627 | WP_000794191.1 | NYN domain-containing protein | - |
| KYC43_RS23735 (114532) | 114532..115122 | + | 591 | WP_001375082.1 | DUF2726 domain-containing protein | - |
| KYC43_RS23740 (115342) | 115342..116019 | + | 678 | WP_001682408.1 | IS66 family transposase ISCro1 | Transposase |
| KYC43_RS23745 (116019) | 116019..116366 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| KYC43_RS23750 (116386) | 116386..117957 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| KYC43_RS23755 (118069) | 118069..118317 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| KYC43_RS24590 (118432) | 118432..118616 | + | 185 | Protein_140 | protein CopA/IncA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|