MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 42006 bp
Accession: NZ_CP079838 Location: 4250994..4292999 Organism: Salmonella enterica subsp. salamae strain LHICA_SA3 Replicon: chromosome
Accession: NZ_CP079838 Location: 4250994..4292999 Organism: Salmonella enterica subsp. salamae strain LHICA_SA3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMJ83_RS20360 (4246518) | 4246518..4246775 | + | 258 | WP_001054380.1 | YjhX family toxin | - |
| JMJ83_RS20365 (4246780) | 4246780..4248411 | + | 1632 | WP_079974444.1 | class I SAM-dependent methyltransferase | - |
| JMJ83_RS20370 (4248823) | 4248823..4249539 | + | 717 | WP_000532939.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| JMJ83_RS20375 (4249895) | 4249895..4250770 | - | 876 | WP_079974445.1 | HNH endonuclease | - |
| JMJ83_RS20385 (4251126) | 4251126..4252010 | + | 885 | WP_079974446.1 | ParA family protein | - |
| JMJ83_RS20390 (4252007) | 4252007..4252381 | + | 375 | WP_003830125.1 | hypothetical protein | - |
| JMJ83_RS20395 (4252374) | 4252374..4253729 | + | 1356 | WP_219190692.1 | replicative DNA helicase | - |
| JMJ83_RS20400 (4253726) | 4253726..4255210 | + | 1485 | WP_079797940.1 | chromosome partitioning protein ParB | - |
| JMJ83_RS20405 (4255194) | 4255194..4255733 | + | 540 | WP_000938043.1 | DUF2857 domain-containing protein | - |
| JMJ83_RS20410 (4255752) | 4255752..4256648 | + | 897 | WP_219165310.1 | STY4528 family pathogenicity island replication protein | - |
| JMJ83_RS20415 (4256617) | 4256617..4256886 | + | 270 | WP_249264787.1 | hypothetical protein | - |
| JMJ83_RS20420 (4257044) | 4257044..4258372 | - | 1329 | WP_079797941.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| JMJ83_RS20425 (4258377) | 4258377..4258682 | - | 306 | WP_001314389.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| JMJ83_RS20430 (4259219) | 4259219..4259374 | + | 156 | WP_176580895.1 | hypothetical protein | - |
| JMJ83_RS20435 (4259764) | 4259764..4261884 | + | 2121 | WP_079974447.1 | retron Eco8 family effector endonuclease | - |
| JMJ83_RS20440 (4262057) | 4262057..4263160 | + | 1104 | WP_079974448.1 | reverse transcriptase family protein | - |
| JMJ83_RS20445 (4263439) | 4263439..4265751 | + | 2313 | WP_079974449.1 | hypothetical protein | VF |
| JMJ83_RS20450 (4265996) | 4265996..4266562 | + | 567 | WP_079797945.1 | alpha/beta hydrolase | - |
| JMJ83_RS20455 (4266939) | 4266939..4268237 | + | 1299 | WP_079797946.1 | hypothetical protein | VF |
| JMJ83_RS20460 (4268479) | 4268479..4269177 | + | 699 | WP_079797947.1 | TIGR03761 family integrating conjugative element protein | - |
| JMJ83_RS20465 (4269167) | 4269167..4269661 | + | 495 | WP_079974450.1 | DUF3158 family protein | - |
| JMJ83_RS24110 (4269704) | 4269704..4269859 | - | 156 | WP_249264789.1 | hypothetical protein | - |
| JMJ83_RS20475 (4270234) | 4270234..4270650 | + | 417 | WP_079797950.1 | STY4534 family ICE replication protein | - |
| JMJ83_RS20480 (4270771) | 4270771..4271235 | + | 465 | WP_079974451.1 | hypothetical protein | VF |
| JMJ83_RS20485 (4271228) | 4271228..4271836 | + | 609 | WP_079974452.1 | hypothetical protein | - |
| JMJ83_RS20490 (4271843) | 4271843..4272493 | + | 651 | WP_079797953.1 | TIGR03759 family integrating conjugative element protein | - |
| JMJ83_RS20495 (4272469) | 4272469..4273002 | + | 534 | WP_079797954.1 | hypothetical protein | VF |
| JMJ83_RS20500 (4272999) | 4272999..4273406 | + | 408 | WP_079797955.1 | integrating conjugative element protein | - |
| JMJ83_RS20505 (4273403) | 4273403..4275436 | + | 2034 | WP_079974453.1 | type IV conjugative transfer system coupling protein TraD | - |
| JMJ83_RS20510 (4275399) | 4275399..4275665 | + | 267 | WP_079797957.1 | hypothetical protein | - |
| JMJ83_RS20515 (4275665) | 4275665..4276348 | + | 684 | WP_079797958.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| JMJ83_RS20520 (4276358) | 4276358..4277155 | + | 798 | WP_079797959.1 | FRG domain-containing protein | - |
| JMJ83_RS20525 (4277549) | 4277549..4277860 | + | 312 | WP_079955214.1 | RAQPRD family integrative conjugative element protein | - |
| JMJ83_RS20530 (4277857) | 4277857..4278090 | + | 234 | WP_023247602.1 | TIGR03758 family integrating conjugative element protein | - |
| JMJ83_RS20535 (4278109) | 4278109..4278435 | + | 327 | WP_023247603.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| JMJ83_RS20540 (4278439) | 4278439..4278792 | + | 354 | WP_079797961.1 | TIGR03750 family conjugal transfer protein | - |
| JMJ83_RS20545 (4278789) | 4278789..4279415 | + | 627 | WP_079797962.1 | TIGR03746 family integrating conjugative element protein | - |
| JMJ83_RS20550 (4279412) | 4279412..4280194 | + | 783 | WP_079974454.1 | TIGR03749 family integrating conjugative element protein | - |
| JMJ83_RS20555 (4280191) | 4280191..4281528 | + | 1338 | Protein_4049 | TIGR03752 family integrating conjugative element protein | - |
| JMJ83_RS20560 (4281528) | 4281528..4281917 | + | 390 | WP_079797964.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| JMJ83_RS20565 (4281917) | 4281917..4284570 | + | 2654 | Protein_4051 | conjugative transfer ATPase | - |
| JMJ83_RS20570 (4284649) | 4284649..4286616 | + | 1968 | WP_079797966.1 | hypothetical protein | - |
| JMJ83_RS20575 (4287279) | 4287279..4288378 | + | 1100 | WP_141125048.1 | IS3 family transposase ISYps8 | Transposase |
| JMJ83_RS20580 (4288781) | 4288781..4289074 | + | 294 | WP_079955206.1 | hypothetical protein | - |
| JMJ83_RS20585 (4289160) | 4289160..4290071 | + | 912 | WP_079797053.1 | zincin-like metallopeptidase domain-containing protein | - |
| JMJ83_RS20590 (4290258) | 4290258..4291877 | + | 1620 | WP_079974586.1 | MobH family relaxase | - |
| JMJ83_RS20595 (4291867) | 4291867..4292793 | + | 927 | WP_079797055.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| JMJ83_RS20605 (4293250) | 4293250..4294269 | + | 1020 | WP_023180041.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| JMJ83_RS20610 (4294297) | 4294297..4294827 | - | 531 | WP_000896758.1 | gluconokinase | - |
| JMJ83_RS20615 (4295044) | 4295044..4296075 | + | 1032 | WP_079974588.1 | L-idonate 5-dehydrogenase | - |
| JMJ83_RS20620 (4296100) | 4296100..4296864 | + | 765 | WP_000998688.1 | gluconate 5-dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|