MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 41998 bp
Accession: NZ_CP079836 Location: 4326120..4368117 Organism: Salmonella enterica subsp. salamae strain LHICA_SA1 Replicon: chromosome
Accession: NZ_CP079836 Location: 4326120..4368117 Organism: Salmonella enterica subsp. salamae strain LHICA_SA1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMJ86_RS20950 (4321643) | 4321643..4321900 | + | 258 | WP_001054380.1 | YjhX family toxin | - |
| JMJ86_RS20955 (4321905) | 4321905..4323536 | + | 1632 | WP_079974444.1 | class I SAM-dependent methyltransferase | - |
| JMJ86_RS20960 (4323948) | 4323948..4324664 | + | 717 | WP_000532939.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| JMJ86_RS20965 (4325021) | 4325021..4325896 | - | 876 | WP_079974445.1 | HNH endonuclease | - |
| JMJ86_RS20975 (4326252) | 4326252..4327136 | + | 885 | WP_079974446.1 | ParA family protein | - |
| JMJ86_RS20980 (4327133) | 4327133..4327507 | + | 375 | WP_003830125.1 | hypothetical protein | - |
| JMJ86_RS20985 (4327500) | 4327500..4328855 | + | 1356 | WP_079797939.1 | replicative DNA helicase | - |
| JMJ86_RS20990 (4328852) | 4328852..4330336 | + | 1485 | WP_079797940.1 | chromosome partitioning protein ParB | - |
| JMJ86_RS20995 (4330320) | 4330320..4330859 | + | 540 | WP_000938043.1 | DUF2857 domain-containing protein | - |
| JMJ86_RS21000 (4330878) | 4330878..4331774 | + | 897 | WP_219165310.1 | STY4528 family pathogenicity island replication protein | - |
| JMJ86_RS21005 (4331743) | 4331743..4332012 | + | 270 | WP_249264787.1 | hypothetical protein | - |
| JMJ86_RS21010 (4332170) | 4332170..4333498 | - | 1329 | WP_079797941.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| JMJ86_RS21015 (4333503) | 4333503..4333808 | - | 306 | WP_001314389.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| JMJ86_RS21020 (4334345) | 4334345..4334500 | + | 156 | WP_176580895.1 | hypothetical protein | - |
| JMJ86_RS21025 (4334890) | 4334890..4337010 | + | 2121 | WP_219165308.1 | retron Eco8 family effector endonuclease | - |
| JMJ86_RS21030 (4337183) | 4337183..4338286 | + | 1104 | WP_079974448.1 | reverse transcriptase family protein | - |
| JMJ86_RS21035 (4338565) | 4338565..4340877 | + | 2313 | WP_079974449.1 | hypothetical protein | VF |
| JMJ86_RS21040 (4341122) | 4341122..4341688 | + | 567 | WP_079797945.1 | alpha/beta hydrolase | - |
| JMJ86_RS21045 (4342065) | 4342065..4343363 | + | 1299 | WP_079797946.1 | hypothetical protein | VF |
| JMJ86_RS21050 (4343605) | 4343605..4344303 | + | 699 | WP_079797947.1 | TIGR03761 family integrating conjugative element protein | - |
| JMJ86_RS21055 (4344293) | 4344293..4344787 | + | 495 | WP_079974450.1 | DUF3158 family protein | - |
| JMJ86_RS24730 (4344830) | 4344830..4344985 | - | 156 | WP_249264789.1 | hypothetical protein | - |
| JMJ86_RS21065 (4345360) | 4345360..4345776 | + | 417 | WP_079797950.1 | STY4534 family ICE replication protein | - |
| JMJ86_RS21070 (4345897) | 4345897..4346361 | + | 465 | WP_079974451.1 | hypothetical protein | VF |
| JMJ86_RS21075 (4346354) | 4346354..4346962 | + | 609 | WP_079974452.1 | hypothetical protein | - |
| JMJ86_RS21080 (4346969) | 4346969..4347619 | + | 651 | WP_079797953.1 | TIGR03759 family integrating conjugative element protein | - |
| JMJ86_RS21085 (4347595) | 4347595..4348128 | + | 534 | WP_079797954.1 | hypothetical protein | VF |
| JMJ86_RS21090 (4348125) | 4348125..4348532 | + | 408 | WP_079797955.1 | integrating conjugative element protein | - |
| JMJ86_RS21095 (4348529) | 4348529..4350562 | + | 2034 | WP_079974453.1 | type IV conjugative transfer system coupling protein TraD | - |
| JMJ86_RS21100 (4350525) | 4350525..4350791 | + | 267 | WP_079797957.1 | hypothetical protein | - |
| JMJ86_RS21105 (4350791) | 4350791..4351474 | + | 684 | WP_079797958.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| JMJ86_RS21110 (4351484) | 4351484..4352281 | + | 798 | WP_079797959.1 | FRG domain-containing protein | - |
| JMJ86_RS21115 (4352675) | 4352675..4352986 | + | 312 | WP_079955214.1 | RAQPRD family integrative conjugative element protein | - |
| JMJ86_RS21120 (4352983) | 4352983..4353216 | + | 234 | WP_023247602.1 | TIGR03758 family integrating conjugative element protein | - |
| JMJ86_RS21125 (4353235) | 4353235..4353561 | + | 327 | WP_023247603.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| JMJ86_RS21130 (4353565) | 4353565..4353918 | + | 354 | WP_079797961.1 | TIGR03750 family conjugal transfer protein | - |
| JMJ86_RS21135 (4353915) | 4353915..4354541 | + | 627 | WP_079797962.1 | TIGR03746 family integrating conjugative element protein | - |
| JMJ86_RS21140 (4354538) | 4354538..4355320 | + | 783 | WP_079974454.1 | TIGR03749 family integrating conjugative element protein | - |
| JMJ86_RS21145 (4355317) | 4355317..4356654 | + | 1338 | Protein_4169 | TIGR03752 family integrating conjugative element protein | - |
| JMJ86_RS21150 (4356654) | 4356654..4357043 | + | 390 | WP_079797964.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| JMJ86_RS21155 (4357043) | 4357043..4359696 | + | 2654 | Protein_4171 | conjugative transfer ATPase | - |
| JMJ86_RS21160 (4359775) | 4359775..4361742 | + | 1968 | WP_079797966.1 | hypothetical protein | - |
| JMJ86_RS21165 (4362405) | 4362405..4363504 | + | 1100 | WP_141125048.1 | IS3 family transposase ISYps8 | Transposase |
| JMJ86_RS21170 (4363907) | 4363907..4364200 | + | 294 | WP_079955206.1 | hypothetical protein | - |
| JMJ86_RS21175 (4364286) | 4364286..4365197 | + | 912 | WP_079797053.1 | zincin-like metallopeptidase domain-containing protein | - |
| JMJ86_RS21180 (4365376) | 4365376..4366995 | + | 1620 | WP_079974586.1 | MobH family relaxase | - |
| JMJ86_RS21185 (4366985) | 4366985..4367911 | + | 927 | WP_079797055.1 | hypothetical protein ; Integrase | Integrase |
| JMJ86_RS21195 (4368368) | 4368368..4369387 | + | 1020 | WP_023180041.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| JMJ86_RS21200 (4369415) | 4369415..4369945 | - | 531 | WP_000896758.1 | gluconokinase | - |
| JMJ86_RS21205 (4370162) | 4370162..4371193 | + | 1032 | WP_079974588.1 | L-idonate 5-dehydrogenase | - |
| JMJ86_RS21210 (4371218) | 4371218..4371982 | + | 765 | WP_000998688.1 | gluconate 5-dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|