MGE detailed information
MGE type: Prophage MGE length: 101079 bp
Accession: NZ_CP079802 Location: 3475417..3576495 Organism: Klebsiella variicola strain EMBL-1 Replicon: chromosome
Accession: NZ_CP079802 Location: 3475417..3576495 Organism: Klebsiella variicola strain EMBL-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU883_RS16915 (KU883_16905) | 3470866..3471339 | - | 474 | WP_032730035.1 | hypothetical protein | - |
| KU883_RS16920 (KU883_16910) | 3471336..3471674 | - | 339 | WP_022066233.1 | hypothetical protein | - |
| KU883_RS16925 (KU883_16915) | 3472073..3472240 | - | 168 | Protein_3338 | isocitrate/isopropylmalate family dehydrogenase | - |
| KU883_RS16930 (KU883_16920) | 3472558..3472881 | - | 324 | WP_110217888.1 | hypothetical protein | - |
| KU883_RS16935 (KU883_16925) | 3472887..3473579 | - | 693 | WP_110217887.1 | EAL domain-containing protein | - |
| KU883_RS16940 (KU883_16930) | 3473936..3474994 | - | 1059 | WP_072122278.1 | sensor domain-containing diguanylate cyclase | - |
| KU883_RS16945 (KU883_16935) | 3475417..3476826 | - | 1410 | WP_219163132.1 | tail fiber domain-containing protein | - |
| KU883_RS16955 (KU883_16945) | 3476888..3487873 | - | 10986 | WP_228744755.1 | DUF1983 domain-containing protein | - |
| KU883_RS16960 (KU883_16950) | 3489833..3490432 | - | 600 | WP_044650399.1 | tail assembly protein | - |
| KU883_RS16965 (KU883_16955) | 3490422..3491129 | - | 708 | WP_012542161.1 | C40 family peptidase | - |
| KU883_RS16970 (KU883_16960) | 3491132..3491881 | - | 750 | WP_012542162.1 | phage minor tail protein L | - |
| KU883_RS16975 (KU883_16965) | 3491974..3492333 | - | 360 | WP_117240120.1 | hypothetical protein | - |
| KU883_RS16980 (KU883_16970) | 3492346..3492696 | - | 351 | WP_117240119.1 | phage tail protein | - |
| KU883_RS16985 (KU883_16975) | 3492696..3494708 | - | 2013 | WP_228744742.1 | phage tail tape measure protein | - |
| KU883_RS16990 (KU883_16980) | 3494888..3496147 | - | 1260 | WP_117240116.1 | phage portal protein | - |
| KU883_RS16995 (KU883_16985) | 3496147..3496326 | - | 180 | WP_020318187.1 | hypothetical protein | - |
| KU883_RS17000 (KU883_16990) | 3496320..3498041 | - | 1722 | WP_021462603.1 | terminase large subunit | - |
| KU883_RS17005 (KU883_16995) | 3498041..3498475 | - | 435 | WP_012542168.1 | phage terminase small subunit P27 family | - |
| KU883_RS17010 (KU883_17000) | 3498724..3499155 | - | 432 | WP_077269189.1 | hypothetical protein | - |
| KU883_RS17015 (KU883_17005) | 3499152..3499475 | - | 324 | WP_219163134.1 | hypothetical protein | - |
| KU883_RS17020 (KU883_17010) | 3499427..3499789 | - | 363 | WP_032428746.1 | HNH endonuclease | - |
| KU883_RS17025 (KU883_17015) | 3499773..3499937 | - | 165 | WP_162838183.1 | hypothetical protein | - |
| KU883_RS17030 (KU883_17020) | 3500116..3500340 | + | 225 | WP_032749552.1 | hypothetical protein | - |
| KU883_RS17035 (KU883_17025) | 3500379..3500816 | - | 438 | WP_065888617.1 | hypothetical protein | - |
| KU883_RS17040 (KU883_17030) | 3501766..3502116 | - | 351 | WP_012542173.1 | hypothetical protein | - |
| KU883_RS17045 (KU883_17035) | 3502113..3502610 | - | 498 | WP_086631574.1 | lysozyme | - |
| KU883_RS17050 (KU883_17040) | 3502588..3502857 | - | 270 | WP_023289178.1 | phage holin | - |
| KU883_RS17055 (KU883_17045) | 3503592..3503999 | - | 408 | WP_012542176.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| KU883_RS17060 (KU883_17050) | 3504047..3504223 | - | 177 | WP_012542177.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| KU883_RS17065 (KU883_17055) | 3504588..3505733 | + | 1146 | WP_023328101.1 | nucleoid-associated protein | - |
| KU883_RS17070 (KU883_17060) | 3505723..3506949 | + | 1227 | WP_219163136.1 | hypothetical protein | - |
| KU883_RS17075 (KU883_17065) | 3506944..3507288 | - | 345 | WP_064147746.1 | antiterminator Q family protein | - |
| KU883_RS17080 (KU883_17070) | 3507301..3508332 | - | 1032 | WP_219163138.1 | DUF968 domain-containing protein | - |
| KU883_RS17085 (KU883_17075) | 3508532..3508924 | - | 393 | WP_016528965.1 | LexA DNA binding domain-containing protein | - |
| KU883_RS17090 (KU883_17080) | 3508965..3509222 | - | 258 | WP_022065893.1 | hypothetical protein | - |
| KU883_RS17095 (KU883_17085) | 3509267..3509500 | - | 234 | WP_143443661.1 | DinI family protein | - |
| KU883_RS17100 (KU883_17090) | 3509939..3510628 | + | 690 | WP_021462588.1 | YafY family protein | - |
| KU883_RS17105 (KU883_17095) | 3510699..3511445 | + | 747 | WP_021462587.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| KU883_RS17110 (KU883_17100) | 3511764..3511991 | + | 228 | WP_021462586.1 | DUF1737 domain-containing protein | - |
| KU883_RS17115 (KU883_17105) | 3512438..3514201 | - | 1764 | WP_032754005.1 | hypothetical protein | VF |
| KU883_RS17120 (KU883_17110) | 3514514..3514954 | - | 441 | WP_032754004.1 | PerC family transcriptional regulator | - |
| KU883_RS17125 (KU883_17115) | 3514968..3515513 | - | 546 | WP_223849140.1 | replication protein P | - |
| KU883_RS17130 (KU883_17120) | 3515425..3516408 | - | 984 | WP_168239774.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| KU883_RS17135 (KU883_17125) | 3516460..3517014 | - | 555 | WP_017898969.1 | toxin YdaT family protein | - |
| KU883_RS17140 (KU883_17130) | 3517017..3517238 | - | 222 | WP_004147982.1 | YdaS family helix-turn-helix protein | - |
| KU883_RS17145 (KU883_17135) | 3517419..3517763 | + | 345 | WP_223168509.1 | transcriptional regulator | - |
| KU883_RS28215 | 3518038..3518160 | + | 123 | WP_014228882.1 | hypothetical protein | - |
| KU883_RS17150 (KU883_17140) | 3518581..3518775 | + | 195 | WP_168239775.1 | DUF1482 family protein | - |
| KU883_RS17155 (KU883_17145) | 3518818..3519162 | + | 345 | WP_014228879.1 | Rrf2 family transcriptional regulator | - |
| KU883_RS17160 (KU883_17150) | 3519301..3521439 | + | 2139 | WP_168239776.1 | exonuclease | - |
| KU883_RS17165 (KU883_17155) | 3521492..3521737 | + | 246 | WP_012542206.1 | excisionase | - |
| KU883_RS17170 (KU883_17160) | 3521718..3522845 | + | 1128 | WP_014228877.1 | hypothetical protein ; Integrase | Integrase |
| KU883_RS17175 (KU883_17165) | 3522963..3523130 | - | 168 | Protein_3388 | isocitrate/isopropylmalate family dehydrogenase | - |
| KU883_RS17180 (KU883_17170) | 3523241..3524311 | - | 1071 | WP_219163140.1 | hypothetical protein | - |
| KU883_RS17185 (KU883_17175) | 3524761..3525438 | + | 678 | WP_219163142.1 | SOS response-associated peptidase | - |
| KU883_RS17190 (KU883_17180) | 3525764..3526756 | - | 993 | WP_157771802.1 | DUF4435 domain-containing protein | - |
| KU883_RS17195 (KU883_17185) | 3526743..3527801 | - | 1059 | WP_219163144.1 | ATP-binding protein | - |
| KU883_RS17200 (KU883_17190) | 3528117..3529382 | - | 1266 | WP_219163146.1 | Y-family DNA polymerase | - |
| KU883_RS17205 (KU883_17195) | 3529384..3529803 | - | 420 | WP_002901812.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KU883_RS28105 | 3530025..3530249 | - | 225 | Protein_3395 | hypothetical protein | - |
| KU883_RS17210 (KU883_17200) | 3530386..3531228 | + | 843 | WP_004203699.1 | DUF6236 family protein | - |
| KU883_RS17215 (KU883_17205) | 3531310..3531573 | - | 264 | WP_004203698.1 | hypothetical protein | - |
| KU883_RS17220 (KU883_17210) | 3531576..3534047 | - | 2472 | WP_219163148.1 | hypothetical protein | - |
| KU883_RS17225 (KU883_17215) | 3534103..3537171 | - | 3069 | WP_219163150.1 | host specificity factor TipJ family phage tail protein | - |
| KU883_RS17230 (KU883_17220) | 3537168..3537548 | - | 381 | WP_219163152.1 | nitrite transporter | - |
| KU883_RS17235 (KU883_17225) | 3537559..3538041 | - | 483 | WP_080928978.1 | DUF1833 family protein | - |
| KU883_RS17240 (KU883_17230) | 3538038..3538502 | - | 465 | WP_029498600.1 | hypothetical protein | - |
| KU883_RS17245 (KU883_17235) | 3538502..3541198 | - | 2697 | WP_080928979.1 | phage tail length tape measure family protein | - |
| KU883_RS17250 (KU883_17240) | 3541179..3541454 | - | 276 | WP_025714419.1 | phage tail assembly protein T | - |
| KU883_RS17255 (KU883_17245) | 3541517..3541912 | - | 396 | WP_023320799.1 | phage minor tail protein G | - |
| KU883_RS17260 (KU883_17250) | 3541961..3542437 | - | 477 | Protein_3406 | phage tail tube protein | - |
| KU883_RS17265 (KU883_17255) | 3542445..3542843 | - | 399 | WP_020804325.1 | phage tail terminator protein | - |
| KU883_RS17270 (KU883_17260) | 3542840..3543391 | - | 552 | WP_032422238.1 | phage tail protein | - |
| KU883_RS17275 (KU883_17265) | 3543381..3543674 | - | 294 | WP_020317349.1 | sugar ABC transporter ATP-binding protein | - |
| KU883_RS17280 (KU883_17270) | 3543667..3543993 | - | 327 | WP_219163154.1 | DUF2190 family protein | - |
| KU883_RS17285 (KU883_17275) | 3544074..3545786 | - | 1713 | WP_223850606.1 | Clp protease ClpP | - |
| KU883_RS17290 (KU883_17280) | 3545842..3547236 | + | 1395 | WP_219163156.1 | hypothetical protein | - |
| KU883_RS17295 (KU883_17285) | 3547423..3547704 | - | 282 | WP_077258541.1 | DUF1441 family protein | - |
| KU883_RS17300 (KU883_17290) | 3547849..3549762 | - | 1914 | WP_047050595.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| KU883_RS17305 (KU883_17295) | 3549759..3549953 | - | 195 | WP_047050594.1 | hypothetical protein | - |
| KU883_RS17310 (KU883_17300) | 3550105..3550818 | + | 714 | WP_047050593.1 | HEPN domain-containing protein | - |
| KU883_RS17315 (KU883_17305) | 3551014..3552384 | - | 1371 | WP_077264225.1 | helicase RepA family protein | - |
| KU883_RS17320 (KU883_17310) | 3552381..3552749 | - | 369 | WP_032743295.1 | hypothetical protein | - |
| KU883_RS17325 (KU883_17315) | 3552746..3553000 | - | 255 | WP_057729206.1 | hypothetical protein | - |
| KU883_RS17330 (KU883_17320) | 3552997..3553179 | - | 183 | WP_242412038.1 | host cell division inhibitor Icd-like protein | - |
| KU883_RS17335 (KU883_17325) | 3553506..3554450 | + | 945 | WP_181833976.1 | DUF3800 domain-containing protein | - |
| KU883_RS17340 (KU883_17330) | 3554510..3554734 | - | 225 | WP_057729204.1 | AlpA family phage regulatory protein | - |
| KU883_RS17345 (KU883_17335) | 3554736..3555971 | - | 1236 | WP_057729203.1 | hypothetical protein ; Integrase | Integrase |
| KU883_RS28110 | 3555919..3556506 | - | 588 | WP_228744743.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| KU883_RS17355 (KU883_17345) | 3556451..3557950 | - | 1500 | WP_080928980.1 | phage portal protein | - |
| KU883_RS17360 (KU883_17350) | 3557947..3558162 | - | 216 | WP_020317294.1 | hypothetical protein | - |
| KU883_RS17365 (KU883_17355) | 3558159..3560267 | - | 2109 | WP_219163158.1 | phage terminase large subunit family protein | - |
| KU883_RS17370 (KU883_17360) | 3560267..3560758 | - | 492 | WP_014228567.1 | DUF1441 family protein | - |
| KU883_RS17375 (KU883_17365) | 3561080..3561265 | - | 186 | WP_085843103.1 | hypothetical protein | - |
| KU883_RS17380 (KU883_17370) | 3561386..3561742 | - | 357 | WP_123806884.1 | hypothetical protein | - |
| KU883_RS17385 (KU883_17375) | 3562100..3562297 | - | 198 | WP_085843105.1 | hypothetical protein | - |
| KU883_RS17390 (KU883_17380) | 3562254..3562523 | - | 270 | WP_136697755.1 | hypothetical protein | - |
| KU883_RS17395 (KU883_17385) | 3562520..3562867 | - | 348 | WP_136697754.1 | hypothetical protein | - |
| KU883_RS17400 (KU883_17390) | 3562864..3563403 | - | 540 | WP_136697753.1 | putative peptidoglycan-binding domain-containing protein | - |
| KU883_RS17405 (KU883_17395) | 3563400..3563699 | - | 300 | WP_024176410.1 | phage holin family protein | - |
| KU883_RS17410 (KU883_17400) | 3564623..3565963 | + | 1341 | WP_136697752.1 | P-loop NTPase fold protein | - |
| KU883_RS17415 (KU883_17405) | 3566002..3566367 | - | 366 | WP_219163160.1 | antiterminator Q family protein | - |
| KU883_RS17420 (KU883_17410) | 3566386..3567366 | - | 981 | WP_219163162.1 | DUF968 domain-containing protein | - |
| KU883_RS17425 (KU883_17415) | 3567379..3567756 | - | 378 | WP_000779146.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KU883_RS17430 (KU883_17420) | 3567766..3568575 | - | 810 | WP_136697750.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| KU883_RS17435 (KU883_17425) | 3568572..3569555 | - | 984 | WP_219163164.1 | helix-turn-helix domain-containing protein | - |
| KU883_RS17440 (KU883_17430) | 3569545..3569724 | - | 180 | WP_004184738.1 | DUF4222 domain-containing protein | - |
| KU883_RS17445 (KU883_17435) | 3569962..3570423 | - | 462 | WP_219163166.1 | YmfL family putative regulatory protein | - |
| KU883_RS17450 (KU883_17440) | 3570458..3570700 | - | 243 | WP_001191665.1 | helix-turn-helix transcriptional regulator | - |
| KU883_RS17455 (KU883_17445) | 3570798..3571493 | + | 696 | WP_040219347.1 | helix-turn-helix transcriptional regulator | - |
| KU883_RS17460 (KU883_17450) | 3572308..3572607 | + | 300 | WP_219163168.1 | hypothetical protein | - |
| KU883_RS17465 (KU883_17455) | 3572607..3573392 | + | 786 | WP_219163170.1 | hypothetical protein | - |
| KU883_RS28220 | 3573389..3573523 | + | 135 | WP_254893702.1 | hypothetical protein | - |
| KU883_RS17470 (KU883_17460) | 3573520..3574596 | + | 1077 | WP_219163172.1 | DGQHR domain-containing protein | - |
| KU883_RS28115 | 3574589..3574828 | + | 240 | WP_228744744.1 | hypothetical protein | - |
| KU883_RS17480 (KU883_17470) | 3574825..3575097 | + | 273 | WP_071592590.1 | hypothetical protein | - |
| KU883_RS17485 (KU883_17475) | 3575127..3575363 | + | 237 | WP_114264142.1 | excisionase | - |
| KU883_RS17490 (KU883_17480) | 3575353..3576495 | + | 1143 | WP_219163175.1 | hypothetical protein ; Integrase | Integrase |
| KU883_RS17495 (KU883_17485) | 3576608..3577858 | - | 1251 | WP_008806032.1 | NADP-dependent isocitrate dehydrogenase | - |
| KU883_RS17500 (KU883_17490) | 3578099..3578749 | + | 651 | WP_032729972.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| KU883_RS17505 (KU883_17495) | 3578766..3579224 | + | 459 | WP_008806030.1 | NUDIX hydrolase | - |
| KU883_RS17510 (KU883_17500) | 3579281..3580387 | + | 1107 | WP_012542211.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| KU883_RS17515 (KU883_17505) | 3580442..3581083 | + | 642 | WP_004140557.1 | high frequency lysogenization protein HflD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|