MGE detailed information
MGE type: Prophage MGE length: 34055 bp
Accession: NZ_CP079736 Location: 2228460..2262514 Organism: Escherichia coli strain GB2005-delet-a-f Replicon: chromosome
Accession: NZ_CP079736 Location: 2228460..2262514 Organism: Escherichia coli strain GB2005-delet-a-f Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KYX13_RS10725 (2223711) | 2223711..2224421 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| KYX13_RS10730 (2224424) | 2224424..2224984 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| KYX13_RS10735 (2225019) | 2225019..2225360 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| KYX13_RS10740 (2225495) | 2225495..2225821 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| KYX13_RS10745 (2226027) | 2226027..2227241 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| KYX13_RS10750 (2227253) | 2227253..2228272 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| KYX13_RS10755 (2228460) | 2228460..2229317 | - | 858 | Protein_2103 | Tyrosine recombinase XerD ; Integrase | Integrase |
| KYX13_RS10760 (2229409) | 2229409..2230637 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| KYX13_RS10765 (2230648) | 2230648..2230953 | - | 306 | Protein_2105 | DUF3596 domain-containing protein | - |
| KYX13_RS10770 (2230967) | 2230967..2231662 | - | 696 | Protein_2106 | IS3 family transposase IS2 | Transposase |
| KYX13_RS10775 (2231659) | 2231659..2232426 | - | 768 | Protein_2107 | exonuclease | - |
| KYX13_RS10780 (2232519) | 2232519..2232710 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| KYX13_RS10785 (2232707) | 2232707..2232895 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| KYX13_RS10790 (2233463) | 2233463..2233681 | - | 219 | WP_001171942.1 | protein YdfC | - |
| KYX13_RS22250 (2233711) | 2233711..2233839 | - | 129 | WP_000344964.1 | protein YdfB | - |
| KYX13_RS10795 (2233841) | 2233841..2233996 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| KYX13_RS10800 (2234163) | 2234163..2234570 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| KYX13_RS10805 (2234654) | 2234654..2234884 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| KYX13_RS10810 (2234868) | 2234868..2235146 | + | 279 | Protein_2115 | hypothetical protein | - |
| KYX13_RS10815 (2235181) | 2235181..2235330 | + | 150 | WP_011443592.1 | protein YdfW | - |
| KYX13_RS10820 (2235767) | 2235767..2236099 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| KYX13_RS10825 (2236302) | 2236302..2236607 | - | 306 | WP_001326990.1 | protein YdfV | - |
| KYX13_RS10830 (2236632) | 2236632..2236871 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| KYX13_RS10835 (2236871) | 2236871..2237158 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| KYX13_RS10840 (2237230) | 2237230..2237385 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| KYX13_RS10845 (2237602) | 2237602..2237853 | + | 252 | WP_000980994.1 | protein Rem | - |
| KYX13_RS10850 (2237920) | 2237920..2238198 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| KYX13_RS10855 (2238200) | 2238200..2239249 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| KYX13_RS10860 (2239263) | 2239263..2240015 | + | 753 | WP_001047135.1 | antitermination protein | - |
| KYX13_RS10865 (2240293) | 2240293..2240382 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| KYX13_RS10870 (2240437) | 2240437..2240649 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| KYX13_RS10875 (2240950) | 2240950..2241165 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| KYX13_RS10880 (2241529) | 2241529..2241699 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| KYX13_RS10885 (2241919) | 2241919..2242134 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| KYX13_RS10890 (2242139) | 2242139..2242450 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| KYX13_RS10895 (2242447) | 2242447..2242980 | + | 534 | WP_001092971.1 | lysozyme | - |
| KYX13_RS10900 (2242977) | 2242977..2243474 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| KYX13_RS10905 (2243837) | 2243837..2244049 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| KYX13_RS10910 (2244060) | 2244060..2244248 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| KYX13_RS10915 (2244251) | 2244251..2244316 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| KYX13_RS10920 (2244395) | 2244395..2244550 | + | 156 | WP_001309517.1 | protein YnfN | - |
| KYX13_RS10925 (2244722) | 2244722..2244895 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| KYX13_RS10930 (2245047) | 2245047..2245457 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| KYX13_RS10935 (2245515) | 2245515..2245748 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| KYX13_RS10940 (2246137) | 2246137..2246706 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| KYX13_RS10945 (2246657) | 2246657..2247619 | + | 963 | WP_001027733.1 | phage tail protein | - |
| KYX13_RS10950 (2247619) | 2247619..2248194 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| KYX13_RS10955 (2248292) | 2248292..2248881 | - | 590 | Protein_2144 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| KYX13_RS10960 (2249198) | 2249198..2249431 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| KYX13_RS10965 (2249500) | 2249500..2249613 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| KYX13_RS10970 (2250134) | 2250134..2251501 | + | 1368 | Protein_2147 | MHS family MFS transporter | - |
| KYX13_RS10975 (2251590) | 2251590..2253050 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| KYX13_RS10980 (2253085) | 2253085..2253288 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| KYX13_RS10985 (2253465) | 2253465..2254151 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| KYX13_RS10990 (2254240) | 2254240..2254986 | - | 747 | WP_000636571.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| KYX13_RS10995 (2255123) | 2255123..2257168 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| KYX13_RS11000 (2257212) | 2257212..2257730 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| KYX13_RS11005 (2258006) | 2258006..2258398 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| KYX13_RS11010 (2258653) | 2258653..2259543 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| KYX13_RS11015 (2259658) | 2259658..2259762 | - | 105 | WP_211180496.1 | protein MgtT | - |
| KYX13_RS11020 (2259762) | 2259762..2259857 | - | 96 | WP_000901367.1 | protein MgtS | - |
| KYX13_RS11025 (2259984) | 2259984..2261171 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| KYX13_RS11030 (2261366) | 2261366..2262265 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| KYX13_RS11035 (2262296) | 2262296..2262514 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| KYX13_RS11040 (2262546) | 2262546..2262929 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| KYX13_RS11045 (2262949) | 2262949..2263383 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| KYX13_RS11050 (2263595) | 2263595..2264260 | + | 666 | WP_000885033.1 | NAAT family transporter MarC | - |
| KYX13_RS11055 (2264285) | 2264285..2265475 | - | 1191 | WP_000210799.1 | L-arabinose MFS transporter | - |
| KYX13_RS11060 (2265625) | 2265625..2266740 | - | 1116 | WP_000258599.1 | putative protein YneK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|