MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 75538 bp
Accession: NZ_CP078098 Location: 1..75538 Organism: Lacticaseibacillus paracasei subsp. paracasei strain GR0548 Replicon: plasmid unnamed
Accession: NZ_CP078098 Location: 1..75538 Organism: Lacticaseibacillus paracasei subsp. paracasei strain GR0548 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5Y16_RS14055 (J5Y16_14055) | 912..2969 | + | 2058 | Protein_1 | hypothetical protein | - |
| J5Y16_RS14060 (J5Y16_14060) | 2975..3310 | + | 336 | Protein_2 | hypothetical protein | - |
| J5Y16_RS14065 (J5Y16_14065) | 3294..3896 | + | 603 | Protein_3 | hypothetical protein | - |
| J5Y16_RS14070 (J5Y16_14070) | 3877..5802 | + | 1926 | Protein_4 | ATP-binding protein | - |
| J5Y16_RS14075 (J5Y16_14075) | 5804..6813 | + | 1010 | Protein_5 | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | VF |
| J5Y16_RS14080 (J5Y16_14080) | 6829..7473 | + | 645 | WP_218210353.1 | hypothetical protein | - |
| J5Y16_RS14085 (J5Y16_14085) | 7470..7877 | + | 408 | WP_218210354.1 | thioredoxin family protein | - |
| J5Y16_RS14090 (J5Y16_14090) | 7867..8688 | + | 822 | WP_218210355.1 | hypothetical protein | - |
| J5Y16_RS14095 (J5Y16_14095) | 9283..9483 | + | 201 | WP_218210356.1 | plasmid replication protein | - |
| J5Y16_RS14100 (J5Y16_14100) | 9480..9755 | + | 276 | WP_218210357.1 | hypothetical protein | - |
| J5Y16_RS14105 (J5Y16_14105) | 9767..10204 | + | 438 | WP_218210358.1 | hypothetical protein | - |
| J5Y16_RS14110 (J5Y16_14110) | 10197..11441 | + | 1245 | WP_218210359.1 | hypothetical protein | Relaxase |
| J5Y16_RS14115 (J5Y16_14115) | 11482..11727 | + | 246 | WP_218210375.1 | hypothetical protein | - |
| J5Y16_RS14120 (J5Y16_14120) | 11714..14260 | + | 2547 | WP_218210360.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| J5Y16_RS14125 (J5Y16_14125) | 14595..14714 | + | 120 | WP_003568776.1 | putative holin-like toxin | - |
| J5Y16_RS14130 (J5Y16_14130) | 14869..15258 | - | 390 | WP_218210361.1 | hypothetical protein | - |
| J5Y16_RS14135 (J5Y16_14135) | 15261..15404 | - | 144 | WP_016381724.1 | hypothetical protein | - |
| J5Y16_RS14140 (J5Y16_14140) | 15397..15846 | - | 450 | WP_218210362.1 | nitroreductase | - |
| J5Y16_RS14145 (J5Y16_14145) | 15859..16305 | - | 447 | WP_218210363.1 | hypothetical protein | - |
| J5Y16_RS14150 (J5Y16_14150) | 16791..17990 | + | 1200 | WP_218210364.1 | IS110 family transposase ISSsu7 | Transposase |
| J5Y16_RS14155 (J5Y16_14155) | 18599..18958 | + | 360 | WP_218210365.1 | XRE family transcriptional regulator | - |
| J5Y16_RS14160 (J5Y16_14160) | 19029..19958 | - | 930 | WP_218210366.1 | IS30 family transposase ISLpl1 | Transposase |
| J5Y16_RS14165 (J5Y16_14165) | 20131..20751 | + | 621 | WP_255323966.1 | class A sortase | - |
| J5Y16_RS14170 (J5Y16_14170) | 20831..21061 | + | 231 | WP_218210368.1 | hypothetical protein | - |
| J5Y16_RS14175 (J5Y16_14175) | 21592..22581 | + | 990 | WP_085694227.1 | LacI family DNA-binding transcriptional regulator | - |
| J5Y16_RS14180 (J5Y16_14180) | 23000..24715 | + | 1716 | WP_085694225.1 | lactose-specific PTS transporter subunit EIIC | - |
| J5Y16_RS14185 (J5Y16_14185) | 24749..26191 | + | 1443 | WP_255323967.1 | 6-phospho-beta-galactosidase | - |
| J5Y16_RS14190 (J5Y16_14190) | 26208..26546 | + | 339 | WP_085694219.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| J5Y16_RS14195 (J5Y16_14195) | 26704..28803 | + | 2100 | WP_218210369.1 | glycosyl hydrolase 53 family protein | - |
| J5Y16_RS14200 (J5Y16_14200) | 29222..29770 | + | 549 | WP_218210370.1 | DNA-binding response regulator | - |
| J5Y16_RS14205 (J5Y16_14205) | 29763..29897 | + | 135 | WP_085694215.1 | YvrJ family protein | - |
| J5Y16_RS14210 (J5Y16_14210) | 30208..30717 | - | 510 | WP_255323968.1 | alcohol dehydrogenase | - |
| J5Y16_RS14215 (J5Y16_14215) | 30747..31031 | - | 285 | WP_016383626.1 | BRCT domain-containing protein | - |
| J5Y16_RS14220 (J5Y16_14220) | 31037..31687 | - | 651 | WP_003586220.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| J5Y16_RS14225 (J5Y16_14225) | 31793..32470 | - | 678 | WP_218210371.1 | type 1 glutamine amidotransferase | - |
| J5Y16_RS14230 (J5Y16_14230) | 32648..33016 | - | 369 | WP_218210372.1 | YxeA family protein | - |
| J5Y16_RS14235 (J5Y16_14235) | 33554..34750 | + | 1197 | WP_218210373.1 | MFS transporter | - |
| J5Y16_RS14240 (J5Y16_14240) | 34890..36130 | - | 1241 | Protein_38 | ISL3 family transposase IS1165 | Transposase |
| J5Y16_RS14245 (J5Y16_14245) | 36571..36852 | - | 282 | WP_218210374.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| J5Y16_RS14250 (J5Y16_14250) | 36845..37087 | - | 243 | WP_016363783.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| J5Y16_RS14255 (J5Y16_14255) | 37322..37807 | + | 486 | WP_202664753.1 | hypothetical protein | - |
| J5Y16_RS14260 (J5Y16_14260) | 38601..39083 | + | 483 | WP_003577506.1 | PTS sugar transporter subunit IIB | - |
| J5Y16_RS14265 (J5Y16_14265) | 39096..40013 | + | 918 | WP_218210328.1 | PTS sugar transporter subunit IIC | - |
| J5Y16_RS14270 (J5Y16_14270) | 40000..40821 | + | 822 | WP_109990538.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| J5Y16_RS14275 (J5Y16_14275) | 41292..43223 | + | 1932 | WP_255323960.1 | glycoside hydrolase family 3 N-terminal domain-containing protein | - |
| J5Y16_RS14280 (J5Y16_14280) | 43392..44075 | + | 684 | WP_002816607.1 | IS6 family transposase ISBth20 | Transposase |
| J5Y16_RS14285 (J5Y16_14285) | 44159..44371 | - | 213 | Protein_47 | hypothetical protein | - |
| J5Y16_RS14600 | 44442..44681 | + | 240 | Protein_48 | transposase | - |
| J5Y16_RS14605 | 44726..44992 | + | 267 | WP_255323961.1 | hypothetical protein | - |
| J5Y16_RS14295 (J5Y16_14295) | 46088..47074 | - | 987 | WP_218210329.1 | LacI family DNA-binding transcriptional regulator | - |
| J5Y16_RS14300 (J5Y16_14300) | 47201..47854 | - | 654 | WP_003578823.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| J5Y16_RS14305 (J5Y16_14305) | 47887..48429 | - | 543 | WP_016383230.1 | 3-hexulose-6-phosphate isomerase | VF |
| J5Y16_RS14310 (J5Y16_14310) | 48426..49049 | - | 624 | WP_218210330.1 | orotidine 5'-phosphate decarboxylase / HUMPS family protein | - |
| J5Y16_RS14315 (J5Y16_14315) | 49049..50011 | - | 963 | WP_016383228.1 | sugar kinase | - |
| J5Y16_RS14320 (J5Y16_14320) | 50097..51389 | - | 1293 | WP_218210331.1 | gluconate:proton symporter | - |
| J5Y16_RS14325 (J5Y16_14325) | 51393..52142 | - | 750 | WP_218210332.1 | sugar phosphate isomerase/epimerase | - |
| J5Y16_RS14330 (J5Y16_14330) | 52176..52433 | - | 258 | WP_016383225.1 | hypothetical protein | - |
| J5Y16_RS14335 (J5Y16_14335) | 52936..53619 | + | 684 | WP_218210333.1 | IS6 family transposase ISBth20 | Transposase |
| J5Y16_RS14340 (J5Y16_14340) | 53679..53855 | - | 177 | Protein_59 | MetQ/NlpA family ABC transporter substrate-binding protein | - |
| J5Y16_RS14345 (J5Y16_14345) | 53922..55073 | - | 1152 | WP_218210335.1 | ArgE/DapE family deacylase | - |
| J5Y16_RS14610 | 55848..56184 | + | 337 | Protein_61 | hypothetical protein | - |
| J5Y16_RS14350 (J5Y16_14350) | 56341..56715 | - | 375 | WP_218210336.1 | DUF5388 domain-containing protein | - |
| J5Y16_RS14355 (J5Y16_14355) | 56717..57526 | - | 810 | WP_218210337.1 | Chromosome partitioning protein ParA | VF |
| J5Y16_RS14360 (J5Y16_14360) | 58044..59102 | + | 1059 | WP_218210338.1 | replication initiator protein A | - |
| J5Y16_RS14365 (J5Y16_14365) | 59092..59829 | + | 738 | WP_218210339.1 | hypothetical protein | - |
| J5Y16_RS14370 (J5Y16_14370) | 60324..60551 | + | 228 | WP_218210340.1 | hypothetical protein | - |
| J5Y16_RS14375 (J5Y16_14375) | 61074..61310 | + | 237 | WP_218210341.1 | hypothetical protein | - |
| J5Y16_RS14380 (J5Y16_14380) | 61318..61536 | + | 219 | WP_218210342.1 | hypothetical protein | - |
| J5Y16_RS14385 (J5Y16_14385) | 61529..61759 | + | 231 | WP_218210343.1 | hypothetical protein | - |
| J5Y16_RS14390 (J5Y16_14390) | 61746..62021 | + | 276 | WP_218210344.1 | hypothetical protein | - |
| J5Y16_RS14395 (J5Y16_14395) | 62060..63448 | + | 1389 | WP_218210345.1 | C39 family peptidase | - |
| J5Y16_RS14400 (J5Y16_14400) | 63799..65061 | + | 1263 | WP_218210346.1 | C39 family peptidase | - |
| J5Y16_RS14615 | 65208..65888 | + | 681 | WP_255323962.1 | thioester domain-containing protein | - |
| J5Y16_RS14405 (J5Y16_14405) | 65931..67553 | + | 1623 | WP_255323963.1 | SpaA isopeptide-forming pilin-related protein | - |
| J5Y16_RS14410 (J5Y16_14410) | 68235..68489 | + | 255 | WP_218210347.1 | hypothetical protein | - |
| J5Y16_RS14620 | 68564..68752 | + | 189 | WP_255323964.1 | hypothetical protein | - |
| J5Y16_RS14415 (J5Y16_14415) | 69133..69411 | + | 279 | WP_218210348.1 | hypothetical protein | - |
| J5Y16_RS14420 (J5Y16_14420) | 69423..69689 | + | 267 | WP_003572355.1 | hypothetical protein | - |
| J5Y16_RS14425 (J5Y16_14425) | 69708..69884 | + | 177 | WP_003572358.1 | hypothetical protein | - |
| J5Y16_RS14430 (J5Y16_14430) | 69886..70113 | + | 228 | WP_218210349.1 | hypothetical protein | - |
| J5Y16_RS14435 (J5Y16_14435) | 70156..71397 | + | 1242 | WP_218210350.1 | hypothetical protein | - |
| J5Y16_RS14440 (J5Y16_14440) | 71375..72952 | + | 1578 | WP_218210351.1 | Pesticidal crystal protein Cry22Aa | VF |
| J5Y16_RS14445 (J5Y16_14445) | 72962..73381 | + | 420 | WP_218210352.1 | single-stranded DNA-binding protein | - |
| J5Y16_RS14450 (J5Y16_14450) | 73391..73969 | + | 579 | WP_176818541.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|