MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 109814 bp
Accession: NZ_CP078069 Location: 745452..855265 Organism: Comamonas sp. NLF-1-9 Replicon: chromosome
Accession: NZ_CP078069 Location: 745452..855265 Organism: Comamonas sp. NLF-1-9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KUD94_RS03615 (KUD94_03615) | 740512..740916 | + | 405 | WP_218238518.1 | iron-sulfur cluster assembly scaffold protein | - |
| KUD94_RS03620 (KUD94_03620) | 740913..741653 | + | 741 | WP_218238519.1 | DNA polymerase III subunit epsilon | - |
| KUD94_RS03630 (KUD94_03630) | 742035..743054 | + | 1020 | WP_218238520.1 | amino acid ABC transporter substrate-binding protein | - |
| KUD94_RS03635 (KUD94_03635) | 743114..744316 | + | 1203 | WP_218238521.1 | amino acid ABC transporter permease | - |
| KUD94_RS03640 (KUD94_03640) | 744320..745417 | + | 1098 | WP_218238522.1 | amino acid ABC transporter permease | - |
| KUD94_RS03645 (KUD94_03645) | 745451..746191 | + | 741 | WP_218238523.1 | amino acid ABC transporter ATP-binding protein | - |
| KUD94_RS03650 (KUD94_03650) | 746223..747284 | - | 1062 | WP_218238524.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| KUD94_RS03655 (KUD94_03655) | 747322..748017 | + | 696 | WP_218238525.1 | ribose-5-phosphate isomerase RpiA | - |
| KUD94_RS03660 (KUD94_03660) | 748020..748655 | + | 636 | WP_218238526.1 | hypothetical protein | - |
| KUD94_RS03665 (KUD94_03665) | 748645..749322 | - | 678 | WP_218238527.1 | glutaredoxin family protein | - |
| KUD94_RS03670 (KUD94_03670) | 749440..751470 | - | 2031 | WP_218238528.1 | M3 family metallopeptidase | - |
| KUD94_RS03675 (KUD94_03675) | 751502..752356 | - | 855 | WP_218238529.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase | - |
| KUD94_RS03680 (KUD94_03680) | 752419..753054 | - | 636 | WP_218239174.1 | Transcriptional regulatory protein TdiR | VF |
| KUD94_RS03685 (KUD94_03685) | 753060..755582 | - | 2523 | WP_218238530.1 | PAS domain S-box protein | - |
| KUD94_RS03690 (KUD94_03690) | 755745..758444 | + | 2700 | WP_218238531.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
| KUD94_RS03695 (KUD94_03695) | 758460..760148 | + | 1689 | WP_218238532.1 | dihydrolipoyllysine-residue acetyltransferase | - |
| KUD94_RS03700 (KUD94_03700) | 760161..761990 | + | 1830 | WP_218238533.1 | dihydrolipoyl dehydrogenase | - |
| KUD94_RS03705 (KUD94_03705) | 762057..762881 | - | 825 | WP_218238534.1 | HDOD domain-containing protein | - |
| KUD94_RS03710 (KUD94_03710) | 763193..763420 | - | 228 | WP_146911083.1 | sulfurtransferase TusA family protein | - |
| KUD94_RS03715 (KUD94_03715) | 763435..763986 | - | 552 | WP_218238535.1 | NUDIX domain-containing protein | - |
| KUD94_RS03720 (KUD94_03720) | 763992..764897 | - | 906 | WP_218238536.1 | cysteine synthase CysM | - |
| KUD94_RS03725 (KUD94_03725) | 765525..765746 | - | 222 | WP_094437501.1 | DUF2274 domain-containing protein | - |
| KUD94_RS03730 (KUD94_03730) | 765743..767026 | - | 1284 | WP_094437502.1 | Type IV secretion system protein virB10 | VF |
| KUD94_RS03735 (KUD94_03735) | 767029..768042 | - | 1014 | WP_094437503.1 | P-type conjugative transfer protein TrbG | - |
| KUD94_RS03740 (KUD94_03740) | 768039..768743 | - | 705 | WP_094437504.1 | conjugal transfer protein TrbF | - |
| KUD94_RS03745 (KUD94_03745) | 768776..770137 | - | 1362 | WP_094437505.1 | P-type conjugative transfer protein TrbL | - |
| KUD94_RS03750 (KUD94_03750) | 770150..770905 | - | 756 | WP_094437506.1 | P-type conjugative transfer protein TrbJ | - |
| KUD94_RS03755 (KUD94_03755) | 770902..773361 | - | 2460 | WP_094437507.1 | conjugal transfer protein TrbE | - |
| KUD94_RS03760 (KUD94_03760) | 773374..773658 | - | 285 | WP_094437508.1 | VirB3 family type IV secretion system protein | - |
| KUD94_RS03765 (KUD94_03765) | 773655..774041 | - | 387 | WP_094437509.1 | TrbC/VirB2 family protein | - |
| KUD94_RS03770 (KUD94_03770) | 774038..775093 | - | 1056 | WP_094437510.1 | Type IV secretion system protein PtlH | VF |
| KUD94_RS03775 (KUD94_03775) | 775090..775545 | - | 456 | WP_094437511.1 | ribbon-helix-helix protein, CopG family | - |
| KUD94_RS03780 (KUD94_03780) | 775542..777551 | - | 2010 | WP_094437512.1 | Conjugal transfer protein TraG | VF |
| KUD94_RS03785 (KUD94_03785) | 777769..777999 | - | 231 | WP_094437513.1 | EexN family lipoprotein | - |
| KUD94_RS03790 (KUD94_03790) | 778025..778939 | - | 915 | WP_094437514.1 | HTH-type transcriptional regulator BenM | VF |
| KUD94_RS03795 (KUD94_03795) | 779151..782270 | - | 3120 | WP_094437515.1 | efflux RND transporter permease subunit | - |
| KUD94_RS03800 (KUD94_03800) | 782267..783787 | - | 1521 | WP_094437516.1 | efflux RND transporter periplasmic adaptor subunit | - |
| KUD94_RS03805 (KUD94_03805) | 783802..785052 | - | 1251 | WP_255569170.1 | TolC family protein | - |
| KUD94_RS03810 (KUD94_03810) | 785185..785640 | - | 456 | WP_094437518.1 | hypothetical protein | - |
| KUD94_RS03815 (KUD94_03815) | 785759..786019 | - | 261 | WP_255569030.1 | hypothetical protein | - |
| KUD94_RS03820 (KUD94_03820) | 786064..788391 | - | 2328 | WP_218239175.1 | copper-translocating P-type ATPase | - |
| KUD94_RS03825 (KUD94_03825) | 788494..788997 | - | 504 | WP_094437520.1 | cytochrome c | - |
| KUD94_RS03830 (KUD94_03830) | 789053..789700 | - | 648 | WP_094437521.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| KUD94_RS03835 (KUD94_03835) | 789705..789983 | - | 279 | WP_094437522.1 | DUF2933 domain-containing protein | - |
| KUD94_RS03840 (KUD94_03840) | 789994..790479 | - | 486 | WP_094437523.1 | hypothetical protein | - |
| KUD94_RS03845 (KUD94_03845) | 790552..790896 | - | 345 | WP_094437524.1 | copper-binding protein | - |
| KUD94_RS03850 (KUD94_03850) | 790952..791449 | - | 498 | WP_094437525.1 | cupredoxin family protein | - |
| KUD94_RS03855 (KUD94_03855) | 791483..792895 | - | 1413 | WP_094437526.1 | copper oxidase | - |
| KUD94_RS03860 (KUD94_03860) | 792912..794330 | - | 1419 | WP_218238537.1 | TolC family protein | - |
| KUD94_RS03865 (KUD94_03865) | 794327..794662 | - | 336 | WP_255569032.1 | hypothetical protein | - |
| KUD94_RS03870 (KUD94_03870) | 794820..795503 | + | 684 | WP_094437528.1 | Transcriptional activator protein CopR | VF |
| KUD94_RS03875 (KUD94_03875) | 795504..796907 | + | 1404 | WP_218238538.1 | heavy metal sensor histidine kinase | - |
| KUD94_RS03880 (KUD94_03880) | 797054..797407 | + | 354 | WP_094437732.1 | DUF4148 domain-containing protein | - |
| KUD94_RS03885 (KUD94_03885) | 797560..798606 | - | 1047 | WP_094437530.1 | DMT family transporter | - |
| KUD94_RS03890 (KUD94_03890) | 798774..800771 | - | 1998 | WP_094437531.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| KUD94_RS03895 (KUD94_03895) | 801208..801795 | - | 588 | WP_094437533.1 | S26 family signal peptidase | - |
| KUD94_RS03900 (KUD94_03900) | 801792..802337 | - | 546 | WP_094437534.1 | DUF2840 domain-containing protein | - |
| KUD94_RS03905 (KUD94_03905) | 802334..802606 | - | 273 | WP_094437733.1 | chromosome partitioning protein ParB | - |
| KUD94_RS03910 (KUD94_03910) | 802603..803241 | - | 639 | WP_094437535.1 | Iron-sulfur cluster carrier protein | VF |
| KUD94_RS03915 (KUD94_03915) | 803495..804352 | - | 858 | WP_094437537.1 | replication initiator protein A | - |
| KUD94_RS03920 (KUD94_03920) | 804379..804660 | - | 282 | WP_043376313.1 | helix-turn-helix domain-containing protein | - |
| KUD94_RS03925 (KUD94_03925) | 804744..805523 | - | 780 | WP_094437538.1 | DUF2285 domain-containing protein | - |
| KUD94_RS03930 (KUD94_03930) | 805861..806208 | - | 348 | WP_094437539.1 | DUF2958 domain-containing protein | - |
| KUD94_RS03935 (KUD94_03935) | 806432..806725 | + | 294 | WP_046196319.1 | helix-turn-helix transcriptional regulator | - |
| KUD94_RS03940 (KUD94_03940) | 806956..807294 | + | 339 | WP_094437541.1 | helix-turn-helix domain-containing protein | - |
| KUD94_RS03945 (KUD94_03945) | 807307..807753 | + | 447 | WP_094437542.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| KUD94_RS03950 (KUD94_03950) | 807773..808270 | + | 498 | WP_094437543.1 | arsenate reductase ArsC | - |
| KUD94_RS03955 (KUD94_03955) | 808278..809363 | + | 1086 | WP_094437544.1 | ACR3 family arsenite efflux transporter | - |
| KUD94_RS03960 (KUD94_03960) | 809377..809799 | + | 423 | WP_094437734.1 | arsenate reductase (glutaredoxin) | - |
| KUD94_RS03965 (KUD94_03965) | 809868..810197 | + | 330 | WP_255569034.1 | PadR family transcriptional regulator | - |
| KUD94_RS03970 (KUD94_03970) | 810194..811423 | + | 1230 | WP_094437549.1 | chromate efflux transporter | - |
| KUD94_RS03975 (KUD94_03975) | 811480..811938 | - | 459 | WP_255569035.1 | transposase | - |
| KUD94_RS03980 (KUD94_03980) | 812006..812214 | - | 209 | Protein_780 | hypothetical protein | - |
| KUD94_RS03985 (KUD94_03985) | 812277..814328 | - | 2052 | WP_094437550.1 | ParB/RepB/Spo0J family partition protein | - |
| KUD94_RS03990 (KUD94_03990) | 814393..815220 | - | 828 | WP_094437551.1 | DUF932 domain-containing protein | - |
| KUD94_RS03995 (KUD94_03995) | 815919..816197 | - | 279 | WP_094437552.1 | hypothetical protein | - |
| KUD94_RS04000 (KUD94_04000) | 816263..816613 | - | 351 | WP_094437553.1 | DUF2958 domain-containing protein | - |
| KUD94_RS14665 | 817128..817376 | + | 249 | Protein_785 | hypothetical protein | - |
| KUD94_RS04005 (KUD94_04005) | 817444..817836 | - | 393 | WP_094437554.1 | YkvA family protein | - |
| KUD94_RS04010 (KUD94_04010) | 817833..818825 | - | 993 | WP_094437555.1 | CDF family Co(II)/Ni(II) efflux transporter DmeF | - |
| KUD94_RS04015 (KUD94_04015) | 818866..819138 | - | 273 | WP_094437556.1 | metal/formaldehyde-sensitive transcriptional repressor | - |
| KUD94_RS04020 (KUD94_04020) | 819458..820036 | + | 579 | WP_094437557.1 | TMEM165/GDT1 family protein | - |
| KUD94_RS04025 (KUD94_04025) | 820214..820446 | - | 233 | Protein_790 | DNA repair protein RadC | - |
| KUD94_RS04030 (KUD94_04030) | 820871..821188 | - | 318 | WP_094437558.1 | addiction module antidote protein | - |
| KUD94_RS04035 (KUD94_04035) | 821169..821519 | - | 351 | WP_094437559.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KUD94_RS04040 (KUD94_04040) | 821618..823015 | - | 1398 | WP_094437560.1 | hypothetical protein ; Integrase | Integrase |
| KUD94_RS04045 (KUD94_04045) | 823376..824635 | + | 1260 | WP_218238539.1 | CaiB/BaiF CoA-transferase family protein | - |
| KUD94_RS04050 (KUD94_04050) | 824713..825243 | + | 531 | WP_218238540.1 | hypothetical protein | - |
| KUD94_RS04055 (KUD94_04055) | 825340..825894 | + | 555 | WP_218238541.1 | DUF4124 domain-containing protein | - |
| KUD94_RS04060 (KUD94_04060) | 825882..826814 | - | 933 | WP_218238542.1 | NAD-dependent epimerase/dehydratase family protein | - |
| KUD94_RS04065 (KUD94_04065) | 826862..827914 | + | 1053 | WP_218238543.1 | CDP-6-deoxy-delta-3,4-glucoseen reductase | - |
| KUD94_RS04070 (KUD94_04070) | 828023..828517 | - | 495 | WP_218238544.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| KUD94_RS04075 (KUD94_04075) | 828514..830049 | - | 1536 | WP_218238545.1 | polynucleotide adenylyltransferase PcnB | - |
| KUD94_RS04080 (KUD94_04080) | 830046..830753 | - | 708 | WP_218238546.1 | HAD family hydrolase | - |
| KUD94_RS04085 (KUD94_04085) | 830750..831457 | - | 708 | WP_218238547.1 | DnaA/Hda family protein | - |
| KUD94_RS04090 (KUD94_04090) | 831723..832772 | + | 1050 | WP_218238548.1 | Phosphoribosylformylglycinamidine cyclo-ligase | VF |
| KUD94_RS04095 (KUD94_04095) | 832863..833825 | + | 963 | WP_218239177.1 | AI-2E family transporter | - |
| KUD94_RS04100 (KUD94_04100) | 833914..834306 | + | 393 | WP_218238549.1 | universal stress protein | - |
| KUD94_RS04105 (KUD94_04105) | 834346..835185 | - | 840 | WP_218238550.1 | tetratricopeptide repeat protein | - |
| KUD94_RS04110 (KUD94_04110) | 835185..836750 | - | 1566 | WP_218238551.1 | murein biosynthesis integral membrane protein MurJ | - |
| KUD94_RS04115 (KUD94_04115) | 836856..837155 | + | 300 | WP_218238552.1 | 30S ribosomal protein S20 | - |
| KUD94_RS04120 (KUD94_04120) | 837298..837612 | - | 315 | WP_218238553.1 | DUF3579 domain-containing protein | - |
| KUD94_RS04125 (KUD94_04125) | 837792..838988 | + | 1197 | WP_218238554.1 | aspartate aminotransferase family protein | - |
| KUD94_RS04130 (KUD94_04130) | 839001..839930 | + | 930 | WP_218238555.1 | Ornithine carbamoyltransferase, anabolic | VF |
| KUD94_RS04135 (KUD94_04135) | 840012..840569 | - | 558 | WP_255569040.1 | DUF488 domain-containing protein | - |
| KUD94_RS04140 (KUD94_04140) | 840687..842075 | - | 1389 | WP_218238556.1 | class II fumarate hydratase | - |
| KUD94_RS04145 (KUD94_04145) | 842343..843908 | + | 1566 | WP_218238557.1 | fumarate hydratase | - |
| KUD94_RS04150 (KUD94_04150) | 844178..844681 | + | 504 | WP_218238558.1 | DUF421 domain-containing protein | - |
| KUD94_RS04155 (KUD94_04155) | 844840..845286 | + | 447 | WP_218238559.1 | hypothetical protein | - |
| KUD94_RS04160 (KUD94_04160) | 845292..845636 | + | 345 | WP_218238560.1 | cupin domain-containing protein | - |
| KUD94_RS04165 (KUD94_04165) | 845713..846318 | + | 606 | WP_255569041.1 | YdeI/OmpD-associated family protein | - |
| KUD94_RS04170 (KUD94_04170) | 846470..846901 | + | 432 | WP_218238561.1 | hypothetical protein | - |
| KUD94_RS04175 (KUD94_04175) | 846983..847087 | - | 105 | Protein_820 | putative Fe-S cluster assembly protein SufT | - |
| KUD94_RS04180 (KUD94_04180) | 847172..847468 | + | 297 | WP_218239180.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| KUD94_RS04185 (KUD94_04185) | 847471..847764 | + | 294 | WP_218238562.1 | putative addiction module antidote protein | Antitoxin Detail |
| KUD94_RS04190 (KUD94_04190) | 847881..848441 | - | 561 | WP_146913999.1 | putative Fe-S cluster assembly protein SufT | - |
| KUD94_RS04195 (KUD94_04195) | 848445..848912 | - | 468 | WP_218238563.1 | SUF system NifU family Fe-S cluster assembly protein | - |
| KUD94_RS04200 (KUD94_04200) | 848909..850174 | - | 1266 | WP_255569042.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| KUD94_RS04205 (KUD94_04205) | 850167..851375 | - | 1209 | WP_218238565.1 | SufD family Fe-S cluster assembly protein | - |
| KUD94_RS04210 (KUD94_04210) | 851378..852160 | - | 783 | WP_218238566.1 | Fe-S cluster assembly ATPase SufC | - |
| KUD94_RS04215 (KUD94_04215) | 852210..853703 | - | 1494 | WP_218238567.1 | Fe-S cluster assembly protein SufB | - |
| KUD94_RS04220 (KUD94_04220) | 854027..856261 | - | 2235 | WP_218238568.1 | NADP-dependent isocitrate dehydrogenase | - |
| KUD94_RS14670 | 856631..857212 | - | 582 | WP_255569043.1 | Fe-Mn family superoxide dismutase | - |
| KUD94_RS04225 (KUD94_04225) | 857327..858655 | - | 1329 | WP_255569044.1 | exodeoxyribonuclease VII large subunit | - |
| KUD94_RS04230 (KUD94_04230) | 858998..859648 | + | 651 | WP_218238569.1 | MotA/TolQ/ExbB proton channel family protein | - |
| KUD94_RS04235 (KUD94_04235) | 859661..860089 | + | 429 | WP_218238570.1 | biopolymer transporter ExbD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|