MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 57786 bp
Accession: NZ_CP077422 Location: 1895882..1953667 Organism: Dickeya dadantii strain M2-3 Replicon: chromosome
Accession: NZ_CP077422 Location: 1895882..1953667 Organism: Dickeya dadantii strain M2-3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KTF62_RS08480 (KTF62_08440) | 1890910..1891170 | + | 261 | Protein_1646 | conjugal transfer protein TrbI | - |
| KTF62_RS08485 (KTF62_08445) | 1891218..1891529 | - | 312 | WP_224062846.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KTF62_RS08490 (KTF62_08450) | 1891526..1891810 | - | 285 | WP_038910903.1 | damage-inducible protein J | - |
| KTF62_RS08495 (KTF62_08455) | 1892177..1892403 | + | 227 | Protein_1649 | recombinase | - |
| KTF62_RS08500 (KTF62_08460) | 1892438..1892839 | - | 402 | WP_012770271.1 | H-NS family nucleoid-associated regulatory protein | - |
| KTF62_RS08505 (KTF62_08465) | 1893140..1893358 | - | 219 | WP_033112297.1 | helix-turn-helix transcriptional regulator | - |
| KTF62_RS08515 (KTF62_08475) | 1895077..1895259 | - | 183 | Protein_1653 | transposase | - |
| KTF62_RS08520 (KTF62_08480) | 1895249..1895350 | - | 102 | Protein_1654 | type VI secretion system tube protein Hcp | - |
| KTF62_RS08525 | 1896030..1896283 | - | 254 | Protein_1655 | transposase | - |
| KTF62_RS08530 (KTF62_08485) | 1896684..1899164 | - | 2481 | WP_224062848.1 | dNTP triphosphohydrolase | - |
| KTF62_RS08535 (KTF62_08490) | 1899673..1900139 | + | 467 | Protein_1657 | IS3 family transposase IS3H | Transposase |
| KTF62_RS08540 (KTF62_08495) | 1900225..1900998 | - | 774 | WP_224062849.1 | IS21 family transposase ISEc62 | Transposase |
| KTF62_RS08545 (KTF62_08500) | 1900998..1902170 | - | 1173 | WP_224062850.1 | IS21 family transposase ISEc62 | Transposase |
| KTF62_RS08550 (KTF62_08505) | 1902275..1902955 | + | 681 | Protein_1660 | IS3 family transposase ISEal1 | Transposase |
| KTF62_RS08555 (KTF62_08510) | 1902986..1903168 | - | 183 | Protein_1661 | IS3 family transposase ISRaq1 | Transposase |
| KTF62_RS08560 (KTF62_08515) | 1903322..1904470 | + | 1149 | WP_224062851.1 | DNA cytosine methyltransferase | - |
| KTF62_RS08565 (KTF62_08520) | 1904480..1907245 | + | 2766 | WP_224062852.1 | hypothetical protein | - |
| KTF62_RS08570 (KTF62_08525) | 1907282..1910065 | + | 2784 | WP_224062853.1 | kinetochore protein | - |
| KTF62_RS08575 (KTF62_08530) | 1910080..1916022 | + | 5943 | WP_224062854.1 | DEAD/DEAH box helicase | - |
| KTF62_RS08580 (KTF62_08535) | 1916030..1917178 | + | 1149 | WP_224062855.1 | PD-(D/E)XK nuclease family protein | - |
| KTF62_RS08585 (KTF62_08540) | 1917382..1917498 | + | 117 | Protein_1667 | IS630 family transposase | - |
| KTF62_RS08590 (KTF62_08545) | 1917978..1918922 | + | 945 | WP_224062856.1 | zincin-like metallopeptidase domain-containing protein | - |
| KTF62_RS08595 (KTF62_08550) | 1919242..1919478 | + | 237 | WP_224062857.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| KTF62_RS08600 (KTF62_08555) | 1919481..1919795 | + | 315 | WP_224062858.1 | CcdB family protein | Toxin Detail |
| KTF62_RS08605 (KTF62_08560) | 1919792..1920544 | - | 753 | WP_224062859.1 | MobC family replication-relaxation protein | - |
| KTF62_RS08610 (KTF62_08565) | 1920553..1922289 | - | 1737 | WP_224063031.1 | type IV secretory system conjugative DNA transfer family protein | - |
| KTF62_RS08615 (KTF62_08570) | 1923055..1923357 | - | 303 | WP_224062860.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| KTF62_RS08620 (KTF62_08575) | 1923398..1924414 | - | 1017 | WP_224062861.1 | Type IV secretion system protein VirB11 | VF |
| KTF62_RS08625 (KTF62_08580) | 1924404..1925618 | - | 1215 | WP_224062862.1 | Type IV secretion system protein virB10 | VF |
| KTF62_RS08630 (KTF62_08585) | 1925615..1926508 | - | 894 | WP_224062863.1 | P-type conjugative transfer protein VirB9 | - |
| KTF62_RS08635 (KTF62_08590) | 1926505..1927188 | - | 684 | WP_224062864.1 | Type IV secretion system protein PtlE | VF |
| KTF62_RS08640 (KTF62_08595) | 1927406..1928434 | - | 1029 | WP_224062865.1 | type IV secretion system protein | - |
| KTF62_RS08645 (KTF62_08600) | 1928446..1928670 | - | 225 | WP_012769218.1 | EexN family lipoprotein | - |
| KTF62_RS08650 (KTF62_08605) | 1928681..1929397 | - | 717 | WP_224062866.1 | type IV secretion system protein | - |
| KTF62_RS08655 (KTF62_08610) | 1929422..1932169 | - | 2748 | WP_224062867.1 | Type IV secretion system protein virB4 | VF |
| KTF62_RS08660 (KTF62_08615) | 1932180..1932461 | - | 282 | WP_224062868.1 | TrbC/VirB2 family protein | - |
| KTF62_RS08665 (KTF62_08620) | 1932475..1933122 | - | 648 | WP_224063032.1 | Type IV secretion system protein virB1 | VF |
| KTF62_RS08670 (KTF62_08625) | 1933192..1933425 | - | 234 | WP_224062869.1 | hypothetical protein | - |
| KTF62_RS08675 (KTF62_08630) | 1933910..1936096 | + | 2187 | WP_024106430.1 | AAA family ATPase | - |
| KTF62_RS08680 (KTF62_08635) | 1936480..1937268 | - | 789 | WP_038923321.1 | hypothetical protein | - |
| KTF62_RS08685 (KTF62_08640) | 1937543..1937752 | - | 210 | WP_015730135.1 | TraR/DksA family transcriptional regulator | - |
| KTF62_RS08690 (KTF62_08645) | 1937742..1938326 | - | 585 | WP_224062870.1 | DUF2857 domain-containing protein | - |
| KTF62_RS08695 (KTF62_08650) | 1938343..1938537 | - | 195 | WP_012884167.1 | AlpA family transcriptional regulator | - |
| KTF62_RS08700 (KTF62_08655) | 1939022..1939279 | - | 258 | WP_033577170.1 | helix-turn-helix transcriptional regulator | - |
| KTF62_RS08705 (KTF62_08660) | 1939393..1939671 | - | 279 | WP_224062871.1 | HTH-type transcriptional regulator Xre | VF |
| KTF62_RS08710 (KTF62_08665) | 1939805..1940092 | + | 288 | WP_224062872.1 | helix-turn-helix transcriptional regulator | - |
| KTF62_RS08715 (KTF62_08670) | 1940371..1940616 | - | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| KTF62_RS08720 (KTF62_08675) | 1941374..1941892 | + | 519 | WP_012768188.1 | Major exported protein | VF |
| KTF62_RS08725 (KTF62_08680) | 1942018..1943871 | + | 1854 | WP_224062873.1 | Actin cross-linking toxin VgrG1 | VF |
| KTF62_RS08730 (KTF62_08685) | 1943885..1944292 | + | 408 | WP_224062874.1 | DUF1795 domain-containing protein | - |
| KTF62_RS08735 (KTF62_08690) | 1944304..1948662 | + | 4359 | WP_224062875.1 | RHS repeat-associated core domain-containing protein | - |
| KTF62_RS08740 (KTF62_08695) | 1948672..1949004 | + | 333 | WP_224062876.1 | hypothetical protein | - |
| KTF62_RS08745 (KTF62_08700) | 1949152..1949535 | + | 384 | WP_224062877.1 | SMI1/KNR4 family protein | - |
| KTF62_RS08750 (KTF62_08705) | 1949801..1950727 | - | 927 | WP_224062878.1 | hypothetical protein | - |
| KTF62_RS08755 (KTF62_08710) | 1951741..1952052 | + | 312 | WP_033577396.1 | DUF736 domain-containing protein | - |
| KTF62_RS08760 (KTF62_08715) | 1952207..1953490 | - | 1284 | WP_224062879.1 | Prophage integrase IntS ; Integrase | Integrase |
| KTF62_RS08770 (KTF62_08725) | 1953837..1954628 | - | 792 | WP_013317450.1 | DgsA anti-repressor MtfA | - |
| KTF62_RS08780 (KTF62_08735) | 1955242..1955589 | + | 348 | WP_033111778.1 | DUF3168 domain-containing protein | - |
| KTF62_RS08785 (KTF62_08740) | 1955680..1957878 | + | 2199 | WP_224062880.1 | discoidin domain-containing protein | - |
| KTF62_RS08790 (KTF62_08745) | 1958050..1958217 | + | 168 | WP_013317453.1 | YqaE/Pmp3 family membrane protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|