MGE detailed information
MGE type: Conjugative plasmid MGE length: 113068 bp
Accession: NZ_CP076647 Location: 1..113068 Organism: Escherichia coli strain GD33 Replicon: plasmid pNDM33-2
Accession: NZ_CP076647 Location: 1..113068 Organism: Escherichia coli strain GD33 Replicon: plasmid pNDM33-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KP013_RS25775 (182) | 182..528 | - | 347 | Protein_1 | conjugal transfer protein | - |
| KP013_RS22655 (546) | 546..4309 | - | 3764 | Protein_2 | DUF5710 domain-containing protein | - |
| KP013_RS22660 (4399) | 4399..4950 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| KP013_RS22665 (4965) | 4965..5255 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| KP013_RS22670 (5252) | 5252..6400 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| KP013_RS22675 (6397) | 6397..7215 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| KP013_RS22680 (7212) | 7212..7670 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| KP013_RS22685 (8065) | 8065..8649 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| KP013_RS22690 (8709) | 8709..9911 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| KP013_RS22695 (9997) | 9997..10821 | - | 825 | WP_001238929.1 | conjugal transfer protein TraE | - |
| KP013_RS22700 (10972) | 10972..12126 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| KP013_RS25780 (12125) | 12125..12478 | + | 354 | WP_001393368.1 | hypothetical protein | - |
| KP013_RS25785 (13227) | 13227..13475 | - | 249 | WP_001349157.1 | hypothetical protein | - |
| KP013_RS22720 (13528) | 13528..14664 | - | 1137 | WP_250947077.1 | hypothetical protein | VF |
| KP013_RS22725 (14664) | 14664..15320 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| KP013_RS22730 (15305) | 15305..15865 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| KP013_RS22735 (15875) | 15875..16489 | - | 615 | WP_000959786.1 | hypothetical protein | VF |
| KP013_RS22740 (16507) | 16507..17604 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| KP013_RS22745 (17617) | 17617..19170 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| KP013_RS22750 (19181) | 19181..19633 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| KP013_RS22755 (19620) | 19620..20915 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| KP013_RS22760 (20908) | 20908..22590 | - | 1683 | WP_149781804.1 | Outer membrane lipoprotein BfpB | VF |
| KP013_RS22765 (22604) | 22604..23041 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| KP013_RS22770 (23041) | 23041..24108 | - | 1068 | WP_001302629.1 | hypothetical protein | VF |
| KP013_RS22775 (24732) | 24732..25028 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| KP013_RS22780 (25204) | 25204..25458 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| KP013_RS22785 (25620) | 25620..26171 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| KP013_RS22790 (26344) | 26344..27027 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| KP013_RS22795 (27281) | 27281..27814 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| KP013_RS22800 (28256) | 28256..28543 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| KP013_RS25790 (28581) | 28581..28739 | - | 159 | Protein_31 | ash family protein | - |
| KP013_RS22810 (29697) | 29697..30728 | + | 1032 | WP_000907866.1 | plasmid replication initiator RepA | - |
| KP013_RS22815 (31426) | 31426..31641 | + | 216 | WP_000841013.1 | hypothetical protein | - |
| KP013_RS22820 (31638) | 31638..32630 | + | 993 | WP_001579760.1 | hypothetical protein | - |
| KP013_RS22825 (32689) | 32689..33306 | - | 618 | WP_000521604.1 | ProQ/FINO family protein | - |
| KP013_RS22830 (33501) | 33501..35057 | - | 1557 | WP_001579759.1 | AAA family ATPase | - |
| KP013_RS22835 (35322) | 35322..35912 | - | 591 | WP_000194568.1 | hypothetical protein | - |
| KP013_RS22840 (35912) | 35912..36169 | - | 258 | WP_000371888.1 | hypothetical protein | - |
| KP013_RS22845 (36498) | 36498..37601 | + | 1104 | WP_001127573.1 | nucleotide-binding protein | - |
| KP013_RS22850 (37631) | 37631..38791 | + | 1161 | WP_064148452.1 | DUF4238 domain-containing protein | - |
| KP013_RS22855 (38803) | 38803..39507 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| KP013_RS25795 (39561) | 39561..39665 | - | 105 | Protein_42 | recombinase family protein | - |
| KP013_RS22860 (39904) | 39904..41118 | + | 1215 | WP_001532073.1 | type II site-specific deoxyribonuclease | - |
| KP013_RS22865 (41152) | 41152..42585 | - | 1434 | WP_001288435.1 | DNA cytosine methyltransferase | - |
| KP013_RS22870 (42679) | 42679..42951 | + | 273 | Protein_45 | IS1 family transposase | - |
| KP013_RS22875 (43208) | 43208..43905 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| KP013_RS22880 (44026) | 44026..44864 | - | 839 | Protein_47 | Streptomycin 3''-adenylyltransferase | ARG |
| KP013_RS22885 (45013) | 45013..46026 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| KP013_RS22890 (46313) | 46313..47017 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| KP013_RS22895 (47305) | 47305..48798 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| KP013_RS22900 (48910) | 48910..49215 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| KP013_RS22905 (49243) | 49243..50457 | - | 1215 | WP_106404739.1 | Bicyclomycin resistance protein | ARG |
| KP013_RS22910 (50674) | 50674..51309 | - | 636 | WP_001253263.1 | DUF3363 domain-containing protein | - |
| KP013_RS22915 (51429) | 51429..52133 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| KP013_RS22920 (52725) | 52725..53309 | - | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| KP013_RS22925 (53309) | 53309..54547 | - | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| KP013_RS22930 (54544) | 54544..55449 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| KP013_RS22935 (55571) | 55571..56275 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| KP013_RS22940 (56511) | 56511..56852 | - | 342 | WP_023909256.1 | chaperonin | - |
| KP013_RS22945 (56813) | 56813..57262 | - | 450 | WP_013362817.1 | hypothetical protein | - |
| KP013_RS22955 (57892) | 57892..58629 | - | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| KP013_RS22960 (58755) | 58755..58850 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| KP013_RS22965 (58985) | 58985..59689 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| KP013_RS25800 (59745) | 59745..59855 | + | 111 | Protein_64 | korC | - |
| KP013_RS22970 (60374) | 60374..61507 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| KP013_RS22975 (61527) | 61527..61811 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| KP013_RS22980 (61982) | 61982..62629 | - | 648 | WP_000074712.1 | hypothetical protein | - |
| KP013_RS22985 (62617) | 62617..62952 | - | 336 | WP_000628093.1 | hypothetical protein | - |
| KP013_RS22990 (63132) | 63132..63713 | - | 582 | WP_000139427.1 | hypothetical protein | - |
| KP013_RS22995 (64284) | 64284..64634 | + | 351 | WP_060614377.1 | hypothetical protein | - |
| KP013_RS23000 (64704) | 64704..65312 | + | 609 | WP_063074920.1 | hypothetical protein | - |
| KP013_RS23005 (65380) | 65380..66162 | + | 783 | WP_001372173.1 | site-specific integrase | - |
| KP013_RS23010 (66300) | 66300..66575 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| KP013_RS23015 (66569) | 66569..67213 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| KP013_RS23020 (67442) | 67442..68413 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| KP013_RS23025 (68418) | 68418..68810 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| KP013_RS23030 (68815) | 68815..70086 | - | 1272 | WP_000457523.1 | Y-family DNA polymerase | - |
| KP013_RS23035 (70086) | 70086..70523 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| KP013_RS23040 (70520) | 70520..70768 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| KP013_RS23045 (71186) | 71186..72088 | + | 903 | WP_072748701.1 | DUF1281 domain-containing protein | - |
| KP013_RS23050 (72085) | 72085..72396 | + | 312 | WP_032072582.1 | hypothetical protein | - |
| KP013_RS23055 (72473) | 72473..73156 | + | 684 | WP_000086147.1 | DNA methylase | - |
| KP013_RS23060 (73157) | 73157..73378 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| KP013_RS23065 (73392) | 73392..73826 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| KP013_RS23070 (73872) | 73872..74648 | + | 777 | WP_001005023.1 | hypothetical protein | - |
| KP013_RS23075 (75060) | 75060..75485 | + | 426 | WP_001579750.1 | antirestriction protein | - |
| KP013_RS23080 (75532) | 75532..75954 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| KP013_RS23085 (75951) | 75951..76142 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| KP013_RS23090 (76213) | 76213..76527 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| KP013_RS23095 (76911) | 76911..77438 | + | 528 | WP_001276107.1 | single-stranded DNA-binding protein | - |
| KP013_RS23100 (77496) | 77496..77729 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| KP013_RS23105 (77788) | 77788..79746 | + | 1959 | WP_001145485.1 | ParB/RepB/Spo0J family partition protein | - |
| KP013_RS23110 (79801) | 79801..80235 | + | 435 | WP_001387500.1 | conjugation system SOS inhibitor PsiB | - |
| KP013_RS23115 (80232) | 80232..80951 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| KP013_RS23120 (80948) | 80948..81544 | + | 597 | Protein_95 | hypothetical protein | - |
| KP013_RS23125 (82006) | 82006..82506 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| KP013_RS23130 (83235) | 83235..83669 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| KP013_RS23135 (83762) | 83762..84028 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| KP013_RS23140 (84093) | 84093..85019 | + | 927 | WP_000038402.1 | Recombination-promoting nuclease RpnA | VF |
| KP013_RS23145 (85042) | 85042..85239 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| KP013_RS23150 (85270) | 85270..85521 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| KP013_RS23160 (86101) | 86101..86949 | + | 849 | WP_001077023.1 | DUF4942 domain-containing protein | - |
| KP013_RS23165 (87035) | 87035..87370 | - | 336 | WP_000157098.1 | hypothetical protein | - |
| KP013_RS23170 (87604) | 87604..87936 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| KP013_RS23175 (87947) | 87947..90646 | + | 2700 | WP_001405892.1 | Protein TraI | Relaxase |
| KP013_RS23180 (90683) | 90683..92974 | - | 2292 | WP_001289276.1 | F-type conjugative transfer protein TrbC | - |
| KP013_RS23185 (92967) | 92967..94037 | - | 1071 | WP_181725925.1 | IncI1-type conjugal transfer protein TrbB | - |
| KP013_RS23190 (94056) | 94056..95264 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (95444) | 95444..95504 | - | 61 | NuclAT_1 | - | - |
| - (95444) | 95444..95504 | - | 61 | NuclAT_1 | - | - |
| - (95444) | 95444..95504 | - | 61 | NuclAT_1 | - | - |
| - (95444) | 95444..95504 | - | 61 | NuclAT_1 | - | - |
| KP013_RS23195 (95571) | 95571..96656 | - | 1086 | WP_000080543.1 | protein finQ | - |
| - (96865) | 96865..96927 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (96865) | 96865..96927 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (96865) | 96865..96927 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (96865) | 96865..96927 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| KP013_RS23200 (96977) | 96977..97129 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| KP013_RS23205 (97201) | 97201..97452 | - | 252 | WP_001291968.1 | hypothetical protein | - |
| - (97839) | 97839..97890 | - | 52 | NuclAT_2 | - | - |
| - (97839) | 97839..97890 | - | 52 | NuclAT_2 | - | - |
| - (97839) | 97839..97890 | - | 52 | NuclAT_2 | - | - |
| - (97839) | 97839..97890 | - | 52 | NuclAT_2 | - | - |
| KP013_RS23210 (98376) | 98376..98552 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| KP013_RS23215 (98761) | 98761..98970 | - | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| KP013_RS23220 (99068) | 99068..99682 | - | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| KP013_RS23225 (99758) | 99758..101926 | - | 2169 | WP_000698360.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| KP013_RS23230 (102023) | 102023..102607 | - | 585 | WP_001579774.1 | IncI1-type conjugal transfer protein TraX | - |
| KP013_RS23235 (102636) | 102636..103838 | - | 1203 | WP_001189159.1 | IncI1-type conjugal transfer protein TraW | - |
| KP013_RS23240 (103805) | 103805..104419 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| KP013_RS23245 (104419) | 104419..107463 | - | 3045 | WP_001024752.1 | IncI1-type conjugal transfer protein TraU | - |
| KP013_RS23250 (107553) | 107553..108353 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| KP013_RS23255 (108337) | 108337..108525 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| KP013_RS23260 (108589) | 108589..108993 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| KP013_RS23265 (109044) | 109044..109571 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| KP013_RS23270 (109571) | 109571..110275 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| KP013_RS23275 (110275) | 110275..111564 | - | 1290 | WP_063074922.1 | conjugal transfer protein TraO | - |
| KP013_RS23280 (111567) | 111567..112550 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|