MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 72277 bp
Accession: NZ_CP076386 Location: 4258929..4331205 Organism: Dickeya dadantii strain S3-1 Replicon: chromosome
Accession: NZ_CP076386 Location: 4258929..4331205 Organism: Dickeya dadantii strain S3-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KNV89_RS22325 | 4258168..4258344 | + | 177 | Protein_3634 | transposase | - |
| KNV89_RS22330 | 4258338..4258523 | - | 186 | Protein_3635 | IS481 family transposase | - |
| KNV89_RS18620 (KNV89_18620) | 4259109..4260143 | - | 1035 | WP_216282491.1 | tyrosine-type recombinase/integrase | - |
| KNV89_RS18625 (KNV89_18625) | 4260143..4260367 | - | 225 | WP_216282492.1 | DUF4224 domain-containing protein | - |
| KNV89_RS18630 (KNV89_18630) | 4260401..4260640 | - | 240 | WP_216282493.1 | hypothetical protein | - |
| KNV89_RS18635 (KNV89_18635) | 4260898..4261407 | + | 510 | WP_216282494.1 | DNA repair protein RadC | - |
| KNV89_RS18640 (KNV89_18640) | 4261998..4262309 | + | 312 | WP_216282495.1 | DUF736 domain-containing protein | - |
| KNV89_RS18645 (KNV89_18645) | 4262655..4263584 | + | 930 | WP_027711202.1 | LysR substrate-binding domain-containing protein | - |
| KNV89_RS18650 (KNV89_18650) | 4263743..4264933 | + | 1191 | WP_216282496.1 | MFS transporter | - |
| KNV89_RS18655 (KNV89_18655) | 4265156..4265517 | + | 362 | Protein_3643 | transposase | - |
| KNV89_RS18660 (KNV89_18660) | 4265895..4266335 | + | 441 | WP_216282497.1 | hypothetical protein | - |
| KNV89_RS18665 (KNV89_18665) | 4266564..4266941 | + | 378 | WP_216282498.1 | hypothetical protein | - |
| KNV89_RS18670 (KNV89_18670) | 4267361..4267546 | - | 186 | Protein_3646 | transposase | - |
| KNV89_RS18675 (KNV89_18675) | 4267645..4268568 | + | 924 | WP_216282500.1 | hypothetical protein | - |
| KNV89_RS18680 (KNV89_18680) | 4268962..4269201 | + | 240 | WP_216282501.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| KNV89_RS18685 (KNV89_18685) | 4269204..4269512 | + | 309 | WP_027711206.1 | CcdB family protein | Toxin Detail |
| KNV89_RS18690 (KNV89_18690) | 4269889..4270686 | + | 798 | WP_216282502.1 | DUF2285 domain-containing protein | - |
| KNV89_RS18695 (KNV89_18695) | 4270770..4271066 | + | 297 | WP_171852246.1 | helix-turn-helix domain-containing protein | - |
| KNV89_RS18700 (KNV89_18700) | 4271093..4271905 | + | 813 | WP_216282503.1 | replication initiator protein A | - |
| KNV89_RS18705 (KNV89_18705) | 4272216..4272761 | + | 546 | WP_216282504.1 | S26 family signal peptidase | - |
| KNV89_RS18710 (KNV89_18710) | 4272962..4274902 | + | 1941 | WP_216282505.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| KNV89_RS18715 (KNV89_18715) | 4275009..4275223 | + | 215 | Protein_3655 | integrase | - |
| KNV89_RS18720 (KNV89_18720) | 4275446..4277095 | + | 1650 | WP_216282506.1 | DNA phosphorothioation-dependent restriction protein DptF | - |
| KNV89_RS18725 (KNV89_18725) | 4277100..4278428 | + | 1329 | WP_216282507.1 | DNA phosphorothioation-dependent restriction protein DptG | - |
| KNV89_RS18730 (KNV89_18730) | 4278409..4283490 | + | 5082 | WP_216282508.1 | DNA phosphorothioation-dependent restriction protein DptH | - |
| KNV89_RS18735 (KNV89_18735) | 4283487..4284074 | + | 588 | WP_245000892.1 | restriction endonuclease | - |
| KNV89_RS18740 (KNV89_18740) | 4284084..4285120 | - | 1037 | Protein_3660 | IS630 family transposase | - |
| KNV89_RS18745 (KNV89_18745) | 4285250..4285462 | + | 213 | WP_245000893.1 | restriction endonuclease | - |
| KNV89_RS18750 (KNV89_18750) | 4285581..4286903 | - | 1323 | WP_216282509.1 | class I SAM-dependent methyltransferase | - |
| KNV89_RS18755 (KNV89_18755) | 4286909..4287262 | - | 354 | WP_216282510.1 | DNA sulfur modification protein DndE | - |
| KNV89_RS18760 (KNV89_18760) | 4287262..4289262 | - | 2001 | WP_216282511.1 | DNA sulfur modification protein DndD | - |
| KNV89_RS18765 (KNV89_18765) | 4289252..4290886 | - | 1635 | WP_216282512.1 | DNA phosphorothioation system sulfurtransferase DndC | - |
| KNV89_RS18770 (KNV89_18770) | 4290883..4291968 | - | 1086 | WP_216282513.1 | DNA sulfur modification protein DndB | - |
| KNV89_RS18775 (KNV89_18775) | 4292247..4292429 | + | 183 | WP_216282514.1 | hypothetical protein | - |
| KNV89_RS18780 (KNV89_18780) | 4292687..4292908 | + | 222 | Protein_3668 | DUF3363 domain-containing protein | - |
| KNV89_RS18785 (KNV89_18785) | 4292946..4293275 | - | 330 | WP_107768169.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS22335 | 4293619..4293831 | + | 213 | Protein_3670 | IS3 family transposase | - |
| KNV89_RS18790 (KNV89_18790) | 4293927..4294265 | - | 339 | WP_216282515.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS18795 (KNV89_18795) | 4294405..4294710 | + | 306 | WP_216282516.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS18800 (KNV89_18800) | 4294886..4295800 | + | 915 | WP_216282517.1 | LysR family transcriptional regulator | - |
| KNV89_RS18805 (KNV89_18805) | 4295825..4296085 | + | 261 | WP_216282518.1 | entry exclusion lipoprotein TrbK | - |
| KNV89_RS18810 (KNV89_18810) | 4296303..4298060 | + | 1758 | Protein_3675 | conjugal transfer protein TraG | - |
| KNV89_RS18815 (KNV89_18815) | 4298255..4298695 | + | 441 | WP_216282520.1 | ribbon-helix-helix protein, CopG family | - |
| KNV89_RS18820 (KNV89_18820) | 4298749..4299702 | + | 954 | WP_245000999.1 | P-type conjugative transfer ATPase TrbB | - |
| KNV89_RS18825 (KNV89_18825) | 4299699..4300046 | + | 348 | WP_216282522.1 | TrbC/VirB2 family protein | - |
| KNV89_RS18830 (KNV89_18830) | 4300043..4300315 | + | 273 | WP_216282523.1 | VirB3 family type IV secretion system protein | - |
| KNV89_RS18835 (KNV89_18835) | 4300326..4302776 | + | 2451 | Protein_3680 | conjugal transfer protein TrbE | - |
| KNV89_RS18840 (KNV89_18840) | 4302776..4303507 | + | 732 | WP_216282524.1 | P-type conjugative transfer protein TrbJ | - |
| KNV89_RS18845 (KNV89_18845) | 4303507..4304667 | + | 1161 | WP_216284683.1 | P-type conjugative transfer protein TrbL | - |
| KNV89_RS18850 (KNV89_18850) | 4304670..4305374 | + | 705 | WP_216282525.1 | conjugal transfer protein TrbF | - |
| KNV89_RS18855 (KNV89_18855) | 4305371..4306252 | + | 882 | WP_216282526.1 | P-type conjugative transfer protein TrbG | - |
| KNV89_RS18860 (KNV89_18860) | 4306255..4307493 | + | 1239 | WP_216282527.1 | TrbI/VirB10 family protein | - |
| KNV89_RS18865 (KNV89_18865) | 4307539..4307850 | - | 312 | WP_038910902.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KNV89_RS18870 (KNV89_18870) | 4307847..4308131 | - | 285 | WP_012768898.1 | DNA-damage-inducible protein J | - |
| KNV89_RS18875 (KNV89_18875) | 4308377..4309912 | - | 1536 | WP_216282528.1 | ISNCY family transposase | - |
| KNV89_RS18880 (KNV89_18880) | 4310294..4311295 | + | 1002 | WP_216282529.1 | hypothetical protein | - |
| KNV89_RS18885 (KNV89_18885) | 4311392..4311700 | - | 309 | WP_245000894.1 | helix-turn-helix domain-containing protein | - |
| KNV89_RS18890 (KNV89_18890) | 4311938..4312741 | - | 804 | WP_159678686.1 | toll/interleukin-1 receptor domain-containing protein | - |
| KNV89_RS18895 (KNV89_18895) | 4313003..4314445 | - | 1443 | WP_216282530.1 | ISNCY family transposase | - |
| KNV89_RS18900 (KNV89_18900) | 4314847..4315716 | - | 870 | WP_216282531.1 | hypothetical protein | - |
| KNV89_RS18905 (KNV89_18905) | 4315953..4316426 | - | 474 | WP_216282532.1 | hypothetical protein | - |
| KNV89_RS18915 (KNV89_18915) | 4316785..4317672 | + | 888 | WP_216282534.1 | hypothetical protein | - |
| KNV89_RS18920 (KNV89_18920) | 4317695..4318842 | + | 1148 | WP_216282535.1 | IS3 family transposase | - |
| KNV89_RS18925 (KNV89_18925) | 4319173..4320000 | + | 828 | WP_216282536.1 | hypothetical protein | - |
| KNV89_RS18930 (KNV89_18930) | 4320328..4320555 | + | 228 | Protein_3698 | recombinase | - |
| KNV89_RS18935 (KNV89_18935) | 4320590..4320991 | - | 402 | WP_216282538.1 | H-NS family nucleoid-associated regulatory protein | - |
| KNV89_RS18940 (KNV89_18940) | 4321292..4321525 | - | 234 | WP_012770270.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS18945 (KNV89_18945) | 4321603..4321833 | - | 231 | WP_171851552.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS18950 (KNV89_18950) | 4321936..4322181 | + | 246 | WP_013316539.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS18955 (KNV89_18955) | 4322233..4322461 | - | 229 | Protein_3703 | IS1-like element transposase | - |
| KNV89_RS18960 (KNV89_18960) | 4322491..4322829 | + | 339 | WP_216282539.1 | SymE family type I addiction module toxin | - |
| KNV89_RS18965 (KNV89_18965) | 4322901..4323335 | - | 435 | WP_216282540.1 | SMI1/KNR4 family protein | - |
| KNV89_RS18970 (KNV89_18970) | 4323340..4327608 | - | 4269 | WP_216282541.1 | RHS repeat-associated core domain-containing protein | - |
| KNV89_RS18975 (KNV89_18975) | 4327620..4328027 | - | 408 | WP_216282542.1 | DUF1795 domain-containing protein | - |
| KNV89_RS18980 (KNV89_18980) | 4328041..4329894 | - | 1854 | WP_216282543.1 | type VI secretion system tip protein VgrG | - |
| KNV89_RS18985 (KNV89_18985) | 4330008..4330526 | - | 519 | WP_013318572.1 | Hcp family type VI secretion system effector | - |
| KNV89_RS18995 (KNV89_18995) | 4331344..4332135 | - | 792 | WP_216282544.1 | DgsA anti-repressor MtfA | - |
| KNV89_RS19005 (KNV89_19005) | 4332452..4332640 | - | 189 | WP_216282545.1 | hypothetical protein | - |
| KNV89_RS19010 (KNV89_19010) | 4332753..4333100 | + | 348 | WP_216282546.1 | DUF3168 domain-containing protein | - |
| KNV89_RS19015 (KNV89_19015) | 4333191..4335389 | + | 2199 | WP_216282547.1 | discoidin domain-containing protein | - |
| KNV89_RS19020 (KNV89_19020) | 4335546..4335713 | + | 168 | WP_013317453.1 | YqaE/Pmp3 family membrane protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|