MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 57889 bp
Accession: NZ_CP076386 Location: 3972575..4030463 Organism: Dickeya dadantii strain S3-1 Replicon: chromosome
Accession: NZ_CP076386 Location: 3972575..4030463 Organism: Dickeya dadantii strain S3-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KNV89_RS17465 (KNV89_17465) | 3968202..3970340 | - | 2139 | WP_216282317.1 | TonB-dependent siderophore receptor | - |
| KNV89_RS17470 (KNV89_17470) | 3970905..3971789 | - | 885 | WP_245000997.1 | MurR/RpiR family transcriptional regulator | - |
| KNV89_RS17475 (KNV89_17475) | 3972212..3972364 | - | 153 | Protein_3405 | Arm DNA-binding domain-containing protein | - |
| KNV89_RS17480 (KNV89_17480) | 3972329..3972559 | + | 231 | WP_216282319.1 | hypothetical protein | - |
| KNV89_RS17485 (KNV89_17485) | 3973015..3974715 | + | 1701 | WP_216282320.1 | AAA family ATPase | - |
| KNV89_RS17490 (KNV89_17490) | 3974712..3976334 | + | 1623 | WP_216282321.1 | ATP-dependent helicase | - |
| KNV89_RS17495 (KNV89_17495) | 3977647..3978531 | - | 885 | WP_216282322.1 | hypothetical protein | - |
| KNV89_RS17500 (KNV89_17500) | 3978907..3979755 | + | 849 | WP_216282323.1 | DNA/RNA non-specific endonuclease | - |
| KNV89_RS22305 | 3979868..3980010 | + | 143 | Protein_3411 | integrase | - |
| KNV89_RS22310 | 3980191..3980379 | + | 189 | Protein_3412 | transposase | - |
| KNV89_RS17510 (KNV89_17510) | 3980851..3981795 | + | 945 | WP_216282324.1 | zincin-like metallopeptidase domain-containing protein | - |
| KNV89_RS17515 (KNV89_17515) | 3982123..3982359 | + | 237 | WP_216282325.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| KNV89_RS17520 (KNV89_17520) | 3982362..3982676 | + | 315 | WP_216282326.1 | CcdB family protein | Toxin Detail |
| KNV89_RS22315 | 3982710..3982844 | - | 135 | Protein_3416 | mobilization protein mobC | - |
| KNV89_RS17525 (KNV89_17525) | 3983083..3984525 | + | 1443 | WP_216282327.1 | IS1182 family transposase | - |
| KNV89_RS17530 (KNV89_17530) | 3984908..3985972 | + | 1065 | WP_216282328.1 | hypothetical protein | - |
| KNV89_RS17535 (KNV89_17535) | 3986038..3986157 | - | 120 | Protein_3419 | IS481 family transposase | - |
| KNV89_RS17540 (KNV89_17540) | 3986197..3986340 | - | 144 | Protein_3420 | IS3 family transposase | - |
| KNV89_RS17545 (KNV89_17545) | 3986422..3986538 | + | 117 | Protein_3421 | transposase | - |
| KNV89_RS17550 (KNV89_17550) | 3986758..3987780 | - | 1023 | Protein_3422 | IS110 family transposase | - |
| KNV89_RS17555 (KNV89_17555) | 3987847..3988541 | + | 695 | Protein_3423 | IS3 family transposase | - |
| KNV89_RS17560 (KNV89_17560) | 3988768..3990012 | - | 1245 | WP_216282329.1 | IS110 family transposase | - |
| KNV89_RS17565 (KNV89_17565) | 3990098..3990394 | + | 297 | Protein_3425 | transposase | - |
| KNV89_RS17570 (KNV89_17570) | 3990603..3991463 | + | 861 | WP_216282330.1 | DNA-processing protein DprA | - |
| KNV89_RS17575 (KNV89_17575) | 3991477..3992790 | + | 1314 | WP_216282331.1 | hypothetical protein | - |
| KNV89_RS17580 (KNV89_17580) | 3992881..3992991 | + | 111 | Protein_3428 | DNA primase | - |
| KNV89_RS17585 (KNV89_17585) | 3993158..3993904 | - | 747 | WP_216282332.1 | MobC family replication-relaxation protein | - |
| KNV89_RS17590 (KNV89_17590) | 3993913..3995676 | - | 1764 | WP_216282333.1 | type IV secretion system DNA-binding domain-containing protein | - |
| KNV89_RS17595 (KNV89_17595) | 3996372..3996674 | - | 303 | WP_216282334.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| KNV89_RS17600 (KNV89_17600) | 3996715..3997731 | - | 1017 | WP_216282335.1 | P-type DNA transfer ATPase VirB11 | - |
| KNV89_RS17605 (KNV89_17605) | 3997721..3998929 | - | 1209 | WP_216282336.1 | VirB10/TraB/TrbI family type IV secretion system protein | - |
| KNV89_RS17610 (KNV89_17610) | 3998926..3999819 | - | 894 | WP_216282337.1 | P-type conjugative transfer protein VirB9 | - |
| KNV89_RS17615 (KNV89_17615) | 3999816..4000499 | - | 684 | WP_216282338.1 | type IV secretion system protein | - |
| KNV89_RS17620 (KNV89_17620) | 4000718..4001746 | - | 1029 | WP_216282339.1 | type IV secretion system protein | - |
| KNV89_RS17625 (KNV89_17625) | 4001822..4002097 | - | 276 | WP_216282340.1 | EexN family lipoprotein | - |
| KNV89_RS17630 (KNV89_17630) | 4002108..4002827 | - | 720 | WP_216282341.1 | type IV secretion system protein | - |
| KNV89_RS17635 (KNV89_17635) | 4002852..4005599 | - | 2748 | WP_216282342.1 | VirB3 family type IV secretion system protein | - |
| KNV89_RS17640 (KNV89_17640) | 4005610..4005885 | - | 276 | WP_216282343.1 | TrbC/VirB2 family protein | - |
| KNV89_RS17645 (KNV89_17645) | 4005888..4006553 | - | 666 | WP_216284662.1 | lytic transglycosylase domain-containing protein | - |
| KNV89_RS17650 (KNV89_17650) | 4006623..4006856 | - | 234 | WP_216282344.1 | hypothetical protein | - |
| KNV89_RS17655 (KNV89_17655) | 4007283..4007813 | + | 531 | Protein_3443 | transposase | - |
| KNV89_RS17660 (KNV89_17660) | 4008237..4009820 | + | 1584 | WP_216282345.1 | hypothetical protein | - |
| KNV89_RS17665 (KNV89_17665) | 4009889..4010650 | + | 762 | WP_216282346.1 | hypothetical protein | - |
| KNV89_RS17670 (KNV89_17670) | 4010853..4012262 | + | 1410 | WP_216282347.1 | FRG domain-containing protein | - |
| KNV89_RS17675 (KNV89_17675) | 4012315..4012849 | + | 535 | Protein_3447 | Tn3 family transposase | - |
| KNV89_RS17680 (KNV89_17680) | 4013264..4014211 | + | 948 | WP_245000881.1 | hypothetical protein | - |
| KNV89_RS22450 | 4014187..4014264 | + | 78 | Protein_3449 | DUF3265 domain-containing protein | - |
| KNV89_RS17685 (KNV89_17685) | 4014502..4014711 | - | 210 | WP_216282348.1 | TraR/DksA family transcriptional regulator | - |
| KNV89_RS17690 (KNV89_17690) | 4014701..4015285 | - | 585 | WP_216282349.1 | DUF2857 domain-containing protein | - |
| KNV89_RS17695 (KNV89_17695) | 4015302..4015496 | - | 195 | WP_012884167.1 | AlpA family transcriptional regulator | - |
| KNV89_RS17700 (KNV89_17700) | 4016162..4016419 | - | 258 | WP_216282350.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS17705 (KNV89_17705) | 4016533..4016811 | - | 279 | WP_216282351.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS17710 (KNV89_17710) | 4016945..4017232 | + | 288 | WP_026594947.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS17715 (KNV89_17715) | 4017511..4017756 | - | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| KNV89_RS17720 (KNV89_17720) | 4018514..4019032 | + | 519 | WP_013317120.1 | Hcp family type VI secretion system effector | - |
| KNV89_RS17725 (KNV89_17725) | 4019145..4020998 | + | 1854 | WP_216282352.1 | type VI secretion system tip protein VgrG | - |
| KNV89_RS17730 (KNV89_17730) | 4021012..4021419 | + | 408 | WP_216282353.1 | DUF1795 domain-containing protein | - |
| KNV89_RS17735 (KNV89_17735) | 4021431..4025753 | + | 4323 | WP_216282354.1 | RHS repeat-associated core domain-containing protein | - |
| KNV89_RS17740 (KNV89_17740) | 4025750..4026307 | + | 558 | WP_192990806.1 | hypothetical protein | - |
| KNV89_RS17745 (KNV89_17745) | 4026593..4027519 | - | 927 | WP_171853093.1 | hypothetical protein | - |
| KNV89_RS17750 (KNV89_17750) | 4028536..4028847 | + | 312 | WP_216282355.1 | DUF736 domain-containing protein | - |
| KNV89_RS17755 (KNV89_17755) | 4029003..4030286 | - | 1284 | WP_216282356.1 | integrase arm-type DNA-binding domain-containing protein | - |
| KNV89_RS17765 (KNV89_17765) | 4030723..4033836 | - | 3114 | WP_216282357.1 | beta-galactosidase | - |
| KNV89_RS17770 (KNV89_17770) | 4034017..4035096 | - | 1080 | WP_216282358.1 | LacI family DNA-binding transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|