MGE detailed information
MGE type: Genomic_island MGE length: 21210 bp
Accession: NZ_CP076230 Location: 4846521..4867730 Organism: Escherichia coli O157:H7 strain Rafaela_II Replicon: chromosome
Accession: NZ_CP076230 Location: 4846521..4867730 Organism: Escherichia coli O157:H7 strain Rafaela_II Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XF37_RS24525 (4842247) | 4842247..4842789 | + | 543 | WP_000934391.1 | hypothetical protein | - |
| XF37_RS24530 (4843082) | 4843082..4845232 | + | 2151 | WP_001298933.1 | pyruvate/proton symporter BtsT | - |
| XF37_RS24535 (4845282) | 4845282..4845485 | + | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
| XF37_RS24540 (4845496) | 4845496..4846452 | + | 957 | WP_001297640.1 | GTPase | - |
| XF37_RS24545 (4846521) | 4846521..4847879 | - | 1359 | WP_001304004.1 | DUF262 domain-containing protein | - |
| XF37_RS28330 (4847888) | 4847888..4848172 | - | 285 | WP_001304005.1 | DUF262 domain-containing protein | - |
| XF37_RS24550 (4848450) | 4848450..4850882 | + | 2433 | WP_000819018.1 | DEAD/DEAH box helicase family protein | - |
| XF37_RS24555 (4850949) | 4850949..4852418 | + | 1470 | WP_001302468.1 | type I restriction-modification system subunit M | - |
| XF37_RS24560 (4852418) | 4852418..4854172 | + | 1755 | WP_000110082.1 | restriction endonuclease subunit S | - |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4854322) | 4854322..4854398 | - | 77 | NuclAT_15 | - | Antitoxin Detail |
| XF37_RS24565 (4854393) | 4854393..4854734 | + | 342 | WP_000132630.1 | endoribonuclease SymE | Toxin Detail |
| XF37_RS24570 (4854781) | 4854781..4855944 | - | 1164 | WP_001304006.1 | DUF1524 domain-containing protein | - |
| XF37_RS24575 (4855992) | 4855992..4856873 | - | 882 | WP_001304007.1 | DUF262 domain-containing protein | - |
| XF37_RS24580 (4857016) | 4857016..4857168 | - | 153 | WP_001418365.1 | hypothetical protein | - |
| XF37_RS24585 (4857311) | 4857311..4858723 | + | 1413 | WP_000199295.1 | PLP-dependent aminotransferase family protein | - |
| XF37_RS24590 (4859083) | 4859083..4859923 | - | 841 | Protein_4815 | Recombination-promoting nuclease RpnD | VF |
| XF37_RS24595 (4860390) | 4860390..4861622 | + | 1233 | WP_001136983.1 | multidrug efflux MFS transporter MdtM | - |
| XF37_RS24600 (4861663) | 4861663..4862934 | + | 1272 | WP_001037406.1 | DUF445 domain-containing protein | - |
| XF37_RS24605 (4863050) | 4863050..4864201 | + | 1152 | WP_001301805.1 | double-cubane-cluster-containing anaerobic reductase | - |
| XF37_RS24610 (4864211) | 4864211..4864978 | + | 768 | WP_000222489.1 | putative 2-hydroxyacyl-CoA dehydratase activator YjiL | - |
| XF37_RS24615 (4864975) | 4864975..4865241 | + | 267 | WP_000657677.1 | DUF3343 domain-containing protein | - |
| XF37_RS24620 (4865553) | 4865553..4867730 | + | 2178 | WP_000535057.1 | hypothetical protein | VF |
| XF37_RS24625 (4867996) | 4867996..4868838 | + | 843 | WP_000746206.1 | YjiK family protein | - |
| XF37_RS24630 (4868906) | 4868906..4870084 | + | 1179 | WP_001089435.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | NC_002655 | 5456776..5475497 | 0.003 | |||
| Escherichia coli O157:H7 str. Sakai | NC_002695 | 5426911..5445631 | 0.003 |