MGE detailed information
MGE type: Prophage MGE length: 116592 bp
Accession: NZ_CP075852 Location: 547158..663749 Organism: Escherichia coli strain S19-651 Replicon: chromosome
Accession: NZ_CP075852 Location: 547158..663749 Organism: Escherichia coli strain S19-651 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFY28_RS02725 (543269) | 543269..543517 | - | 249 | WP_001065752.1 | protein YmgC | - |
| JFY28_RS02730 (543630) | 543630..543896 | - | 267 | WP_000888772.1 | biofilm/acid-resistance regulator AriR | - |
| JFY28_RS02735 (543925) | 543925..544197 | - | 273 | WP_000857995.1 | two-component-system connector protein YmgA | - |
| JFY28_RS02740 (544240) | 544240..544476 | - | 237 | WP_000554144.1 | regulatory protein YcgZ | - |
| JFY28_RS02745 (544790) | 544790..546001 | + | 1212 | WP_001299269.1 | blue light-responsive regulator BluF | - |
| JFY28_RS02750 (546206) | 546206..546937 | + | 732 | WP_000332303.1 | DNA-binding transcriptional repressor BluR | - |
| JFY28_RS02755 (547158) | 547158..547562 | + | 405 | WP_000373101.1 | DUF1398 domain-containing protein | - |
| JFY28_RS02760 (547615) | 547615..547725 | + | 111 | WP_032141808.1 | hypothetical protein | - |
| JFY28_RS02765 (547961) | 547961..548005 | + | 45 | WP_120795380.1 | protein YmgK | - |
| JFY28_RS02770 (548258) | 548258..548581 | + | 324 | WP_001307134.1 | anti-adapter protein IraM | - |
| JFY28_RS02775 (548684) | 548684..548851 | - | 168 | Protein_549 | isocitrate/isopropylmalate family dehydrogenase | - |
| JFY28_RS02780 (549180) | 549180..549392 | - | 213 | WP_198798517.1 | hypothetical protein | - |
| JFY28_RS02785 (549697) | 549697..549894 | - | 198 | WP_050437354.1 | hypothetical protein | - |
| JFY28_RS02790 (549956) | 549956..550696 | - | 741 | WP_135402199.1 | hypothetical protein | - |
| JFY28_RS02795 (550997) | 550997..552238 | + | 1242 | WP_032308697.1 | Prophage integrase IntA ; Integrase | Integrase |
| JFY28_RS02800 (552735) | 552735..552941 | + | 207 | WP_198798575.1 | AlpA family phage regulatory protein | - |
| JFY28_RS02805 (553092) | 553092..553271 | - | 180 | WP_032308698.1 | hypothetical protein | - |
| JFY28_RS02810 (553491) | 553491..553718 | - | 228 | WP_198798574.1 | hypothetical protein | - |
| JFY28_RS02815 (553776) | 553776..554081 | - | 306 | WP_000179576.1 | YlcI/YnfO family protein | - |
| JFY28_RS26580 (554271) | 554271..554609 | + | 339 | Protein_558 | ash family protein | - |
| JFY28_RS26585 (554640) | 554640..554828 | + | 189 | WP_231233486.1 | host cell division inhibitor Icd-like protein | - |
| JFY28_RS02825 (554821) | 554821..555288 | + | 468 | WP_198798567.1 | host cell division inhibitor Icd-like protein | - |
| JFY28_RS02830 (555278) | 555278..555508 | + | 231 | WP_000551676.1 | hypothetical protein | - |
| JFY28_RS02835 (555501) | 555501..555728 | + | 228 | WP_000549006.1 | hypothetical protein | - |
| JFY28_RS02840 (555734) | 555734..556033 | + | 300 | WP_198798568.1 | DUF4222 domain-containing protein | - |
| JFY28_RS02845 (556030) | 556030..557778 | + | 1749 | WP_062850878.1 | DUF5906 domain-containing protein | - |
| JFY28_RS02850 (558065) | 558065..558344 | + | 280 | Protein_565 | hypothetical protein | - |
| JFY28_RS02855 (558341) | 558341..558751 | + | 411 | WP_198798569.1 | single-stranded DNA-binding protein | - |
| JFY28_RS02860 (558762) | 558762..559034 | + | 273 | WP_198798570.1 | PerC family transcriptional regulator | - |
| JFY28_RS02865 (559294) | 559294..559575 | + | 282 | WP_217077945.1 | hypothetical protein | - |
| JFY28_RS02870 (559856) | 559856..560014 | + | 159 | WP_157949236.1 | hypothetical protein | - |
| JFY28_RS02875 (560769) | 560769..561317 | - | 549 | Protein_570 | recombinase family protein | - |
| JFY28_RS02880 (561443) | 561443..561757 | + | 315 | WP_152634098.1 | hypothetical protein | - |
| JFY28_RS02885 (561754) | 561754..562173 | + | 420 | WP_000782982.1 | tail assembly chaperone | - |
| JFY28_RS02890 (562145) | 562145..562747 | - | 603 | WP_032331725.1 | tail fiber assembly protein | - |
| JFY28_RS02895 (562747) | 562747..563529 | - | 783 | WP_032331726.1 | tail fiber protein | - |
| JFY28_RS02900 (563533) | 563533..564117 | - | 585 | WP_000383548.1 | YmfQ family protein | - |
| JFY28_RS02905 (564108) | 564108..565166 | - | 1059 | WP_021570569.1 | baseplate J/gp47 family protein | - |
| JFY28_RS02910 (565153) | 565153..565578 | - | 426 | WP_032331700.1 | phage GP46 family protein | - |
| JFY28_RS02915 (565578) | 565578..566126 | - | 549 | WP_001259084.1 | phage baseplate assembly protein V | - |
| JFY28_RS02920 (566126) | 566126..567205 | - | 1080 | WP_000999510.1 | baseplate protein | - |
| JFY28_RS02925 (567202) | 567202..568530 | - | 1329 | WP_032252894.1 | DNA circularization N-terminal domain-containing protein | - |
| JFY28_RS02930 (568641) | 568641..569087 | + | 447 | WP_000734912.1 | hypothetical protein | - |
| JFY28_RS02935 (569120) | 569120..570952 | - | 1833 | WP_032201156.1 | phage tail tape measure protein | - |
| JFY28_RS02940 (571094) | 571094..571363 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| JFY28_RS02945 (571363) | 571363..571719 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| JFY28_RS02950 (571719) | 571719..573215 | - | 1497 | WP_032331701.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| JFY28_RS02955 (573199) | 573199..573369 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| JFY28_RS02960 (573378) | 573378..573938 | - | 561 | WP_000779292.1 | hypothetical protein | - |
| JFY28_RS02965 (573935) | 573935..574441 | - | 507 | WP_032331702.1 | hypothetical protein | - |
| JFY28_RS02970 (574416) | 574416..574826 | - | 411 | WP_001676467.1 | phage head closure protein | - |
| JFY28_RS02975 (574823) | 574823..575146 | - | 324 | WP_000927719.1 | head-tail connector protein | - |
| JFY28_RS02980 (575149) | 575149..575349 | - | 201 | WP_000601360.1 | hypothetical protein | - |
| JFY28_RS02985 (575399) | 575399..576604 | - | 1206 | Protein_592 | phage major capsid protein | - |
| JFY28_RS02990 (576619) | 576619..577269 | - | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| JFY28_RS02995 (577247) | 577247..578488 | - | 1242 | WP_001514795.1 | phage portal protein | - |
| JFY28_RS03000 (578488) | 578488..578670 | - | 183 | WP_000605606.1 | protein YmfR | - |
| JFY28_RS03005 (578682) | 578682..580316 | - | 1635 | WP_254210623.1 | terminase large subunit | - |
| JFY28_RS03010 (580313) | 580313..580807 | - | 495 | WP_000929180.1 | phage terminase small subunit P27 family | - |
| JFY28_RS03015 (580933) | 580933..581283 | - | 351 | WP_024184542.1 | HNH endonuclease signature motif containing protein | - |
| JFY28_RS03020 (581787) | 581787..582128 | + | 342 | WP_001361772.1 | hypothetical protein | - |
| JFY28_RS26590 (582305) | 582305..582562 | - | 258 | WP_122990143.1 | peptidase | - |
| JFY28_RS03025 (582447) | 582447..582839 | - | 393 | WP_001351593.1 | DUF2570 domain-containing protein | - |
| JFY28_RS03030 (582823) | 582823..583299 | - | 477 | WP_001197773.1 | glycoside hydrolase family protein | - |
| JFY28_RS03035 (583303) | 583303..583629 | - | 327 | WP_001120492.1 | phage holin, lambda family | - |
| JFY28_RS03040 (583915) | 583915..584937 | + | 1023 | WP_001351594.1 | hypothetical protein | - |
| JFY28_RS03045 (584945) | 584945..585529 | + | 585 | WP_001122064.1 | hypothetical protein | - |
| JFY28_RS03050 (585533) | 585533..585883 | - | 351 | WP_001205459.1 | antiterminator Q family protein | - |
| JFY28_RS03055 (585901) | 585901..586890 | - | 990 | WP_001351595.1 | DUF968 domain-containing protein | - |
| JFY28_RS03060 (586898) | 586898..587695 | - | 798 | WP_001061404.1 | KilA-N domain-containing protein | - |
| JFY28_RS03065 (587715) | 587715..588104 | - | 390 | WP_032331705.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JFY28_RS03070 (588101) | 588101..588427 | - | 327 | WP_032331706.1 | LexA family transcriptional regulator | - |
| JFY28_RS03075 (588424) | 588424..589077 | - | 654 | WP_000066917.1 | phage N-6-adenine-methyltransferase | - |
| JFY28_RS03080 (589077) | 589077..589571 | - | 495 | WP_074433394.1 | PerC family transcriptional regulator | - |
| JFY28_RS03085 (589568) | 589568..590509 | - | 942 | WP_032331708.1 | helix-turn-helix domain-containing protein | - |
| JFY28_RS03090 (590499) | 590499..590678 | - | 180 | WP_071780779.1 | DUF4222 domain-containing protein | - |
| JFY28_RS03095 (590854) | 590854..591411 | - | 558 | WP_000526668.1 | protein YmfL | - |
| JFY28_RS03100 (591404) | 591404..591664 | - | 261 | WP_032331709.1 | helix-turn-helix transcriptional regulator | - |
| JFY28_RS03105 (591762) | 591762..592454 | + | 693 | WP_023993853.1 | XRE family transcriptional regulator | - |
| JFY28_RS03110 (593159) | 593159..593521 | + | 363 | WP_000135680.1 | protein YfdP | - |
| JFY28_RS03115 (593587) | 593587..594411 | + | 825 | WP_024246882.1 | DUF2303 family protein | - |
| JFY28_RS03120 (594540) | 594540..595088 | + | 549 | WP_032331716.1 | 5'-deoxynucleotidase | - |
| JFY28_RS03125 (595132) | 595132..595377 | + | 246 | WP_071792162.1 | excisionase | - |
| JFY28_RS03130 (595358) | 595358..596488 | + | 1131 | WP_024246528.1 | hypothetical protein ; Integrase | Integrase |
| JFY28_RS03135 (596512) | 596512..597078 | - | 567 | WP_024246527.1 | hypothetical protein | - |
| JFY28_RS03140 (597075) | 597075..598598 | - | 1524 | WP_024246526.1 | AAA family ATPase | - |
| JFY28_RS03145 (598766) | 598766..600016 | - | 1251 | WP_000444485.1 | NADP-dependent isocitrate dehydrogenase | - |
| JFY28_RS03150 (600188) | 600188..600841 | + | 654 | WP_001248691.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| JFY28_RS03155 (600851) | 600851..601312 | + | 462 | WP_000476093.1 | phosphatase NudJ | - |
| JFY28_RS03160 (601366) | 601366..602472 | + | 1107 | WP_001297484.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| JFY28_RS03165 (602508) | 602508..603149 | + | 642 | WP_001297479.1 | high frequency lysogenization protein HflD | - |
| JFY28_RS03170 (603153) | 603153..604523 | + | 1371 | WP_000423729.1 | adenylosuccinate lyase | - |
| JFY28_RS03175 (604691) | 604691..605362 | + | 672 | WP_001265481.1 | Transcriptional regulatory protein PhoP | VF |
| JFY28_RS03180 (605362) | 605362..606822 | + | 1461 | WP_000735412.1 | two-component system sensor histidine kinase PhoQ | - |
| JFY28_RS03185 (606898) | 606898..608019 | + | 1122 | WP_001295435.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| JFY28_RS03190 (608165) | 608165..609394 | - | 1230 | WP_000359438.1 | peptidase T | - |
| JFY28_RS03195 (609644) | 609644..610780 | + | 1137 | WP_000531601.1 | Spermidine/putrescine import ATP-binding protein PotA | VF |
| JFY28_RS03200 (610764) | 610764..611627 | + | 864 | WP_000799399.1 | spermidine/putrescine ABC transporter permease PotB | - |
| JFY28_RS03205 (611792) | 611792..612124 | + | 333 | WP_198798526.1 | YkgJ family cysteine cluster protein | - |
| JFY28_RS03210 (612289) | 612289..612960 | - | 672 | WP_001537058.1 | DUF4376 domain-containing protein | - |
| JFY28_RS03215 (613310) | 613310..614776 | - | 1467 | WP_062903299.1 | prophage tail fiber N-terminal domain-containing protein | - |
| JFY28_RS03220 (614961) | 614961..618491 | - | 3531 | WP_217077947.1 | host specificity protein J | - |
| JFY28_RS03225 (618747) | 618747..619328 | - | 582 | WP_062864131.1 | tail assembly protein | - |
| JFY28_RS03230 (619325) | 619325..620068 | - | 744 | WP_198798552.1 | C40 family peptidase | - |
| JFY28_RS03235 (620079) | 620079..620777 | - | 699 | WP_033804610.1 | phage minor tail protein L | - |
| JFY28_RS03240 (620777) | 620777..621106 | - | 330 | WP_000847298.1 | phage tail protein | - |
| JFY28_RS03245 (621103) | 621103..623715 | - | 2613 | WP_198798553.1 | phage tail tape measure protein | - |
| JFY28_RS03250 (623705) | 623705..624109 | - | 405 | WP_044809160.1 | phage tail assembly protein T | - |
| JFY28_RS03255 (624136) | 624136..624567 | - | 432 | WP_032330778.1 | phage minor tail protein G | - |
| JFY28_RS03260 (624583) | 624583..625332 | - | 750 | WP_000235130.1 | phage tail protein | - |
| JFY28_RS03265 (625340) | 625340..625738 | - | 399 | WP_000682718.1 | phage tail terminator protein | - |
| JFY28_RS03270 (625751) | 625751..626374 | - | 624 | WP_000974971.1 | phage tail protein | - |
| JFY28_RS03275 (626377) | 626377..626658 | - | 282 | WP_001281346.1 | DNA breaking-rejoining protein | - |
| JFY28_RS03280 (626651) | 626651..626977 | - | 327 | WP_033807893.1 | DUF2190 family protein | - |
| JFY28_RS03285 (627065) | 627065..629044 | - | 1980 | WP_135402203.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| JFY28_RS03290 (629034) | 629034..630536 | - | 1503 | WP_033807892.1 | phage portal protein | - |
| JFY28_RS03295 (630536) | 630536..630748 | - | 213 | WP_000102415.1 | hypothetical protein | - |
| JFY28_RS03300 (630745) | 630745..632868 | - | 2124 | WP_033807891.1 | phage terminase large subunit family protein | - |
| JFY28_RS03305 (632865) | 632865..633341 | - | 477 | WP_016236020.1 | DUF1441 family protein | - |
| JFY28_RS03310 (633970) | 633970..634155 | - | 186 | WP_198798554.1 | Rz1 family lipoprotein | - |
| JFY28_RS03315 (634378) | 634378..634509 | - | 132 | WP_001280932.1 | hypothetical protein | - |
| JFY28_RS03320 (634524) | 634524..634706 | - | 183 | WP_021566721.1 | hypothetical protein | - |
| JFY28_RS03325 (634863) | 634863..635396 | - | 534 | WP_115438473.1 | lysozyme | - |
| JFY28_RS26595 (636451) | 636451..636699 | - | 249 | Protein_662 | YdfR family protein | - |
| JFY28_RS03335 (636704) | 636704..636919 | - | 216 | WP_000284510.1 | class II holin family protein | - |
| JFY28_RS03340 (636995) | 636995..637264 | - | 270 | WP_001537095.1 | DUF826 domain-containing protein | - |
| JFY28_RS03345 (637290) | 637290..637484 | - | 195 | WP_198798561.1 | DUF1378 family protein | - |
| JFY28_RS03350 (637624) | 637624..639612 | - | 1989 | WP_198798562.1 | DUF1737 domain-containing protein | - |
| JFY28_RS26600 (639867) | 639867..639998 | + | 132 | Protein_667 | hypothetical protein | - |
| JFY28_RS03355 (640181) | 640181..640378 | - | 198 | WP_000917768.1 | hypothetical protein | - |
| JFY28_RS03360 (640596) | 640596..641156 | - | 561 | WP_021577232.1 | DUF1133 family protein | - |
| JFY28_RS03365 (641165) | 641165..641524 | - | 360 | WP_021577231.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JFY28_RS03370 (641537) | 641537..642586 | - | 1050 | WP_001265238.1 | DUF968 domain-containing protein | - |
| JFY28_RS03375 (642588) | 642588..642866 | - | 279 | WP_032270698.1 | hypothetical protein | - |
| JFY28_RS03380 (643034) | 643034..643189 | - | 156 | WP_052977210.1 | type I toxin-antitoxin system toxin HokD | - |
| JFY28_RS03385 (643435) | 643435..643539 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| JFY28_RS26605 (643655) | 643655..643894 | - | 240 | Protein_675 | DUF551 domain-containing protein | - |
| JFY28_RS03395 (644906) | 644906..645084 | - | 179 | Protein_676 | hypothetical protein | - |
| JFY28_RS03400 (645086) | 645086..645868 | - | 783 | WP_198798413.1 | ead/Ea22-like family protein | - |
| JFY28_RS03405 (645865) | 645865..646089 | - | 225 | WP_021577603.1 | hypothetical protein | - |
| JFY28_RS03410 (646086) | 646086..646436 | - | 351 | WP_254210624.1 | DUF4406 domain-containing protein | - |
| JFY28_RS03420 (646433) | 646433..646825 | - | 393 | WP_198798412.1 | DUF977 family protein | - |
| JFY28_RS03425 (646841) | 646841..647566 | - | 726 | WP_198798411.1 | DUF1627 domain-containing protein | - |
| JFY28_RS03430 (647600) | 647600..648061 | - | 462 | WP_000139447.1 | replication protein P | - |
| JFY28_RS03435 (648054) | 648054..649067 | - | 1014 | WP_198798410.1 | DUF1376 domain-containing protein | - |
| JFY28_RS03440 (649154) | 649154..649591 | - | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| JFY28_RS03445 (649575) | 649575..649847 | - | 273 | WP_000887447.1 | YdaS family helix-turn-helix protein | - |
| JFY28_RS03450 (649957) | 649957..650358 | + | 402 | WP_001329851.1 | helix-turn-helix domain-containing protein | - |
| JFY28_RS03455 (650386) | 650386..650577 | + | 192 | WP_000100899.1 | hypothetical protein | Antitoxin Detail |
| JFY28_RS03460 (650577) | 650577..650864 | + | 288 | WP_000936798.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| JFY28_RS03465 (651137) | 651137..651292 | + | 156 | WP_000379557.1 | DUF1391 family protein | - |
| JFY28_RS03470 (651452) | 651452..651670 | + | 219 | WP_001171946.1 | protein YdfC | - |
| JFY28_RS03475 (652252) | 652252..652440 | + | 189 | WP_000449172.1 | cell division inhibition protein DicB | - |
| JFY28_RS03480 (652437) | 652437..652625 | + | 189 | WP_071995903.1 | DUF1482 family protein | - |
| JFY28_RS03485 (652718) | 652718..655162 | + | 2445 | WP_062861044.1 | exonuclease | - |
| JFY28_RS03490 (655224) | 655224..655493 | + | 270 | WP_000003742.1 | excisionase | - |
| JFY28_RS03495 (655462) | 655462..656580 | + | 1119 | WP_000074972.1 | hypothetical protein ; Integrase | Integrase |
| JFY28_RS03500 (656747) | 656747..657541 | + | 795 | WP_000580316.1 | spermidine/putrescine ABC transporter permease PotC | - |
| JFY28_RS03505 (657538) | 657538..658584 | + | 1047 | WP_000759309.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| JFY28_RS03510 (658642) | 658642..659103 | + | 462 | WP_000076381.1 | DUF3592 domain-containing protein | - |
| JFY28_RS03515 (659100) | 659100..659888 | + | 789 | WP_032330939.1 | TPM domain-containing protein | - |
| JFY28_RS03520 (660027) | 660027..660848 | - | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| JFY28_RS03525 (660864) | 660864..661775 | - | 912 | WP_000291270.1 | N-acetylglucosamine kinase | - |
| JFY28_RS03530 (661804) | 661804..663048 | - | 1245 | WP_001251350.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| JFY28_RS03535 (663048) | 663048..663749 | - | 702 | WP_001033694.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| JFY28_RS03540 (663742) | 663742..664941 | - | 1200 | WP_000284709.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|