MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 49000 bp
Accession: NZ_CP075689 Location: 1..49000 Organism: Pseudomonas amygdali pv. lachrymans strain 8 Replicon: plasmid pPAL8-03
Accession: NZ_CP075689 Location: 1..49000 Organism: Pseudomonas amygdali pv. lachrymans strain 8 Replicon: plasmid pPAL8-03
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4C37_RS28460 (C4C37_28460) | 186..1622 | + | 1437 | WP_214551408.1 | replication initiation protein | - |
| C4C37_RS28465 (C4C37_28465) | 2211..3188 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28470 (C4C37_28470) | 3218..3430 | + | 213 | WP_214551410.1 | hypothetical protein | - |
| C4C37_RS28475 (C4C37_28475) | 3565..3708 | - | 144 | Protein_3 | transposase | - |
| C4C37_RS28480 (C4C37_28480) | 3916..4887 | + | 972 | WP_080956124.1 | XopAH/AvrB family type III secretion system effector | - |
| C4C37_RS28485 (C4C37_28485) | 5013..5990 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28490 (C4C37_28490) | 6197..7300 | + | 1104 | WP_004663854.1 | IS5 family transposase ISPsy19 | Transposase |
| C4C37_RS28495 (C4C37_28495) | 7533..8933 | + | 1401 | WP_052508578.1 | TrbI/VirB10 family protein | - |
| C4C37_RS28505 (C4C37_28505) | 10323..10850 | - | 528 | WP_227024935.1 | hypothetical protein | - |
| C4C37_RS28510 (C4C37_28510) | 11100..11348 | + | 249 | WP_005746122.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| C4C37_RS28515 (C4C37_28515) | 11361..11711 | + | 351 | WP_005746121.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C4C37_RS28520 (C4C37_28520) | 11880..12368 | - | 489 | WP_005746120.1 | hypothetical protein | - |
| C4C37_RS28525 (C4C37_28525) | 12578..12694 | + | 117 | Protein_13 | prevent-host-death protein | - |
| C4C37_RS28530 (C4C37_28530) | 12742..13416 | - | 675 | Protein_14 | IS3 family transposase ISPsy37 | Transposase |
| C4C37_RS28535 (C4C37_28535) | 13559..14536 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28540 (C4C37_28540) | 14604..14870 | - | 267 | WP_227024934.1 | hypothetical protein | - |
| C4C37_RS28545 (C4C37_28545) | 15044..15310 | + | 267 | WP_004642394.1 | hypothetical protein | - |
| C4C37_RS28550 (C4C37_28550) | 15307..15927 | + | 621 | WP_004642393.1 | hypothetical protein | - |
| C4C37_RS28555 (C4C37_28555) | 16282..17259 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28560 (C4C37_28560) | 17496..17921 | - | 426 | Protein_20 | IS5 family transposase ISPsy2 | Transposase |
| C4C37_RS28565 (C4C37_28565) | 17960..18193 | + | 234 | WP_005746115.1 | hypothetical protein | - |
| C4C37_RS28570 (C4C37_28570) | 18213..18545 | + | 333 | WP_005746114.1 | hypothetical protein | - |
| C4C37_RS28575 (C4C37_28575) | 18639..18854 | + | 216 | WP_005746113.1 | hypothetical protein | - |
| C4C37_RS28580 (C4C37_28580) | 19096..19356 | + | 261 | WP_005746111.1 | hypothetical protein | - |
| C4C37_RS28585 (C4C37_28585) | 19414..19626 | + | 213 | WP_005746110.1 | hypothetical protein | - |
| C4C37_RS28590 (C4C37_28590) | 19718..19909 | + | 192 | WP_005746109.1 | hypothetical protein | - |
| C4C37_RS28595 (C4C37_28595) | 19978..21000 | + | 1023 | WP_005741072.1 | IS21 family transposase ISPsy4 | Transposase |
| C4C37_RS28600 (C4C37_28600) | 20997..21806 | + | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C4C37_RS29155 | 22334..22782 | - | 449 | Protein_29 | tyrosine-type recombinase/integrase | - |
| C4C37_RS28610 (C4C37_28610) | 22812..23825 | - | 1014 | WP_005741118.1 | IS30 family transposase IS1394 | Transposase |
| C4C37_RS28615 (C4C37_28615) | 23891..24394 | - | 504 | WP_020339809.1 | hypothetical protein | - |
| C4C37_RS28620 (C4C37_28620) | 24527..24757 | + | 231 | WP_004668066.1 | carbon storage regulator | - |
| C4C37_RS28625 (C4C37_28625) | 24780..25193 | + | 414 | WP_005747117.1 | TraR/DksA family transcriptional regulator | - |
| C4C37_RS28630 (C4C37_28630) | 25231..25452 | + | 222 | WP_004666918.1 | hypothetical protein | - |
| C4C37_RS28635 (C4C37_28635) | 25778..26398 | - | 621 | WP_005747119.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C4C37_RS28640 (C4C37_28640) | 26928..27296 | + | 369 | WP_230852682.1 | transposase | - |
| C4C37_RS28645 (C4C37_28645) | 27293..27628 | + | 336 | WP_005747121.1 | IS66 family transposase ISPsy43 | Transposase |
| C4C37_RS28650 (C4C37_28650) | 27690..29258 | + | 1569 | WP_214551405.1 | IS66 family transposase ISPpu19 | Transposase |
| C4C37_RS28655 (C4C37_28655) | 29315..29833 | + | 519 | WP_005747123.1 | GNAT family N-acetyltransferase | - |
| C4C37_RS28660 (C4C37_28660) | 29980..32811 | - | 2832 | WP_214551407.1 | AAA family ATPase | - |
| C4C37_RS28665 (C4C37_28665) | 33018..33356 | + | 339 | WP_005747126.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C4C37_RS28670 (C4C37_28670) | 33356..33643 | + | 288 | WP_005622028.1 | XRE family transcriptional regulator | - |
| C4C37_RS28675 (C4C37_28675) | 33705..34121 | + | 417 | WP_005747127.1 | TrfB-related DNA-binding protein | - |
| C4C37_RS29160 | 35115..35228 | + | 114 | Protein_44 | SOS response-associated peptidase | - |
| C4C37_RS28680 (C4C37_28680) | 35547..36182 | - | 636 | WP_005747128.1 | hypothetical protein | - |
| C4C37_RS28685 (C4C37_28685) | 36273..36680 | - | 408 | Protein_46 | IS91 family transposase ISWz1 | Transposase |
| C4C37_RS28690 (C4C37_28690) | 36877..37452 | + | 576 | WP_031599078.1 | Tn3 family transposase ISPsy39 | Transposase |
| C4C37_RS28695 (C4C37_28695) | 37457..40411 | + | 2955 | Protein_48 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| C4C37_RS28700 (C4C37_28700) | 40461..41174 | + | 714 | WP_002556089.1 | UPF0149 family protein | - |
| C4C37_RS28705 (C4C37_28705) | 41229..41498 | - | 270 | Protein_50 | tyrosine-type recombinase/integrase | - |
| C4C37_RS28710 (C4C37_28710) | 41531..44557 | - | 3027 | WP_005746130.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| C4C37_RS28715 (C4C37_28715) | 44547..45143 | - | 597 | WP_003381935.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| C4C37_RS28720 (C4C37_28720) | 45594..46571 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS29165 | 46673..47515 | - | 843 | WP_080437679.1 | XopAF/AvrXv3 family type III secretion system effector | - |
| C4C37_RS28730 (C4C37_28730) | 48348..48602 | + | 255 | WP_005746128.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|