MGE detailed information
MGE type: Conjugative plasmid MGE length: 72398 bp
Accession: NZ_CP075688 Location: 1..72398 Organism: Pseudomonas amygdali pv. lachrymans strain 8 Replicon: plasmid pPAL8-02
Accession: NZ_CP075688 Location: 1..72398 Organism: Pseudomonas amygdali pv. lachrymans strain 8 Replicon: plasmid pPAL8-02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4C37_RS28100 (C4C37_28100) | 203..1489 | + | 1287 | WP_005746133.1 | replication initiation protein | - |
| C4C37_RS28105 (C4C37_28105) | 1740..2027 | + | 288 | WP_004667956.1 | HU family DNA-binding protein | - |
| C4C37_RS28110 (C4C37_28110) | 2172..2870 | + | 699 | WP_005741149.1 | GNAT family N-acetyltransferase | - |
| C4C37_RS28115 (C4C37_28115) | 3324..3479 | + | 156 | WP_227024930.1 | DUF4113 domain-containing protein | - |
| C4C37_RS28120 (C4C37_28120) | 4606..7632 | - | 3027 | WP_005746130.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| C4C37_RS28125 (C4C37_28125) | 7622..8218 | - | 597 | WP_003381935.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| C4C37_RS29130 | 8535..9377 | - | 843 | WP_080437679.1 | XopAF/AvrXv3 family type III secretion system effector | - |
| C4C37_RS28135 (C4C37_28135) | 10011..11537 | - | 1527 | WP_054068140.1 | IS66 family transposase ISPpu19 | Transposase |
| C4C37_RS28145 (C4C37_28145) | 11805..12614 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C4C37_RS28150 (C4C37_28150) | 12611..13633 | - | 1023 | WP_005741072.1 | IS21 family transposase ISPsy4 | Transposase |
| C4C37_RS28155 (C4C37_28155) | 13702..13902 | - | 201 | WP_114805207.1 | IS66 family transposase ISPpu14 | Transposase |
| C4C37_RS28160 (C4C37_28160) | 13899..14231 | - | 333 | WP_005741230.1 | transposase | - |
| C4C37_RS28165 (C4C37_28165) | 14539..15291 | + | 753 | WP_054068184.1 | hypothetical protein | - |
| C4C37_RS28170 (C4C37_28170) | 15426..16403 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28175 (C4C37_28175) | 16552..17655 | + | 1104 | WP_004663854.1 | IS5 family transposase ISPsy19 | Transposase |
| C4C37_RS28180 (C4C37_28180) | 17821..18798 | - | 978 | WP_214551399.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS29135 | 19117..19635 | - | 519 | Protein_16 | restriction endonuclease | - |
| C4C37_RS28185 (C4C37_28185) | 19819..21048 | + | 1230 | WP_005746179.1 | IS91 family transposase IS801 | Transposase |
| C4C37_RS28190 (C4C37_28190) | 21406..22341 | + | 936 | WP_005746178.1 | AvrD family protein | - |
| C4C37_RS28195 (C4C37_28195) | 22683..23330 | + | 648 | WP_005746177.1 | histidine phosphatase family protein | - |
| C4C37_RS28200 (C4C37_28200) | 23476..24396 | + | 921 | WP_005746176.1 | TauD/TfdA family dioxygenase | - |
| C4C37_RS28205 (C4C37_28205) | 24414..25448 | + | 1035 | WP_005746175.1 | sulfotransferase family protein | - |
| C4C37_RS28210 (C4C37_28210) | 25489..26691 | + | 1203 | WP_214551403.1 | aspartate aminotransferase family protein | - |
| C4C37_RS28215 (C4C37_28215) | 26728..27384 | + | 657 | WP_044299722.1 | 2OG-Fe(II) oxygenase family protein | - |
| C4C37_RS28220 (C4C37_28220) | 27384..27962 | + | 579 | WP_005746172.1 | AAA family ATPase | - |
| C4C37_RS28225 (C4C37_28225) | 28035..28748 | - | 714 | WP_214551292.1 | UPF0149 family protein | - |
| C4C37_RS28230 (C4C37_28230) | 28798..31752 | - | 2955 | Protein_26 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| C4C37_RS28235 (C4C37_28235) | 31757..32332 | - | 576 | WP_031599078.1 | Tn3 family transposase ISPsy39 | Transposase |
| C4C37_RS28240 (C4C37_28240) | 32462..33571 | - | 1110 | WP_227024875.1 | HopW family type III effector protein | - |
| C4C37_RS28245 (C4C37_28245) | 34290..35267 | - | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28250 (C4C37_28250) | 36360..36722 | - | 363 | Protein_30 | IS3 family transposase ISPsy24 | Transposase |
| C4C37_RS28255 (C4C37_28255) | 36816..37025 | + | 210 | WP_225620208.1 | IS3 family transposase ISPsy24 | Transposase |
| C4C37_RS28260 (C4C37_28260) | 37112..38089 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28265 (C4C37_28265) | 38386..39528 | + | 1143 | WP_005746165.1 | IQ calmodulin-binding motif-containing protein | - |
| C4C37_RS28270 (C4C37_28270) | 39947..40228 | - | 282 | WP_002556029.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C4C37_RS28275 (C4C37_28275) | 40228..40416 | - | 189 | WP_002556028.1 | hypothetical protein | Antitoxin Detail |
| C4C37_RS28280 (C4C37_28280) | 40605..41240 | - | 636 | WP_054068142.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C4C37_RS28285 (C4C37_28285) | 41563..42195 | + | 633 | WP_003381804.1 | ParA family protein | - |
| C4C37_RS28290 (C4C37_28290) | 42231..42485 | + | 255 | WP_003381801.1 | hypothetical protein | - |
| C4C37_RS28295 (C4C37_28295) | 42910..43575 | - | 666 | WP_004667059.1 | LexA family transcriptional regulator | - |
| C4C37_RS28300 (C4C37_28300) | 43663..43893 | + | 231 | WP_032704469.1 | Cro/CI family transcriptional regulator | - |
| C4C37_RS28305 (C4C37_28305) | 44243..44932 | + | 690 | WP_005746161.1 | Type IV secretion system protein virB1 | VF |
| C4C37_RS28310 (C4C37_28310) | 44929..45267 | + | 339 | WP_017279422.1 | hypothetical protein | - |
| C4C37_RS28315 (C4C37_28315) | 45280..45756 | + | 477 | WP_080544547.1 | VirB3 family type IV secretion system protein | - |
| C4C37_RS28320 (C4C37_28320) | 45671..48169 | + | 2499 | WP_235774983.1 | conjugal transfer protein | - |
| C4C37_RS28325 (C4C37_28325) | 48166..48852 | + | 687 | WP_004667979.1 | P-type DNA transfer protein VirB5 | - |
| C4C37_RS28330 (C4C37_28330) | 48885..49250 | + | 366 | WP_004643103.1 | hypothetical protein | - |
| C4C37_RS28335 (C4C37_28335) | 49261..50193 | + | 933 | WP_004667984.1 | type IV secretion system protein | - |
| C4C37_RS28340 (C4C37_28340) | 50267..50533 | + | 267 | WP_005746157.1 | hypothetical protein | - |
| C4C37_RS28345 (C4C37_28345) | 50570..51358 | + | 789 | WP_004667986.1 | Type IV secretion system protein virB8 | VF |
| C4C37_RS28350 (C4C37_28350) | 51348..52157 | + | 810 | WP_004667987.1 | P-type conjugative transfer protein VirB9 | - |
| C4C37_RS28355 (C4C37_28355) | 52144..53520 | + | 1377 | WP_005746156.1 | Type IV secretion system protein virB10 | VF |
| C4C37_RS28360 (C4C37_28360) | 53530..54585 | + | 1056 | WP_214551401.1 | Type IV secretion system protein VirB11 | VF |
| C4C37_RS28365 (C4C37_28365) | 54599..54985 | + | 387 | WP_005746154.1 | hypothetical protein | - |
| C4C37_RS28370 (C4C37_28370) | 54970..55335 | + | 366 | WP_004667995.1 | hypothetical protein | - |
| C4C37_RS28375 (C4C37_28375) | 55382..55648 | + | 267 | WP_004644125.1 | hypothetical protein | - |
| C4C37_RS28380 (C4C37_28380) | 55773..58184 | + | 2412 | WP_044299713.1 | ATP-binding protein | - |
| C4C37_RS28385 (C4C37_28385) | 58300..58533 | + | 234 | WP_004666680.1 | hypothetical protein | - |
| C4C37_RS28390 (C4C37_28390) | 58533..60206 | + | 1674 | WP_005746152.1 | type IV secretory system conjugative DNA transfer family protein | - |
| C4C37_RS28395 (C4C37_28395) | 60246..60608 | + | 363 | WP_005746150.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| C4C37_RS28400 (C4C37_28400) | 60636..62801 | + | 2166 | WP_005746149.1 | type IA DNA topoisomerase | - |
| C4C37_RS28405 (C4C37_28405) | 62828..63112 | + | 285 | WP_005746148.1 | hypothetical protein | - |
| C4C37_RS28410 (C4C37_28410) | 63140..63745 | + | 606 | WP_054068143.1 | single-stranded DNA-binding protein | - |
| C4C37_RS28415 (C4C37_28415) | 64056..64775 | + | 720 | WP_005746145.1 | StbB family protein | - |
| C4C37_RS28420 (C4C37_28420) | 64772..65344 | + | 573 | WP_005746144.1 | hypothetical protein | - |
| C4C37_RS28425 (C4C37_28425) | 65411..65854 | - | 444 | WP_005746143.1 | hypothetical protein | - |
| C4C37_RS28430 (C4C37_28430) | 66248..66973 | + | 726 | WP_005746141.1 | relaxosome component | - |
| C4C37_RS29140 | 66963..67625 | + | 663 | Protein_67 | hypothetical protein | Relaxase |
| C4C37_RS29145 | 67960..68379 | + | 420 | WP_005746139.1 | hypothetical protein | Relaxase |
| C4C37_RS29150 | 68667..70736 | + | 2070 | WP_227024933.1 | hypothetical protein | Relaxase |
| C4C37_RS28440 (C4C37_28440) | 70868..71113 | + | 246 | WP_005746137.1 | Major pilu subunit operon regulatory protein PapB | VF |
| C4C37_RS28445 (C4C37_28445) | 71191..71328 | + | 138 | WP_005746136.1 | hypothetical protein | - |
| C4C37_RS28450 (C4C37_28450) | 71468..71917 | + | 450 | WP_005746135.1 | GntR family transcriptional regulator | - |
| C4C37_RS28455 (C4C37_28455) | 71976..72203 | + | 228 | WP_005746134.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|