MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 77748 bp
Accession: NZ_CP075687 Location: 1..77748 Organism: Pseudomonas amygdali pv. lachrymans strain 8 Replicon: plasmid pPAL8-01
Accession: NZ_CP075687 Location: 1..77748 Organism: Pseudomonas amygdali pv. lachrymans strain 8 Replicon: plasmid pPAL8-01
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4C37_RS27665 (C4C37_27665) | 198..1511 | + | 1314 | WP_214551396.1 | replication initiation protein | - |
| C4C37_RS27670 (C4C37_27670) | 1737..2024 | + | 288 | WP_004667956.1 | HU family DNA-binding protein | - |
| C4C37_RS27675 (C4C37_27675) | 2169..2435 | + | 267 | WP_235774981.1 | hypothetical protein | - |
| C4C37_RS27680 (C4C37_27680) | 2608..2910 | - | 303 | Protein_3 | IS91 family transposase IS801 | Transposase |
| C4C37_RS27685 (C4C37_27685) | 3520..4962 | - | 1443 | WP_214551397.1 | hypothetical protein | - |
| C4C37_RS27690 (C4C37_27690) | 5189..5461 | - | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C4C37_RS27695 (C4C37_27695) | 5451..5636 | - | 186 | WP_004666945.1 | hypothetical protein | Antitoxin Detail |
| C4C37_RS27700 (C4C37_27700) | 5687..5965 | - | 279 | WP_054068781.1 | hypothetical protein | - |
| C4C37_RS29115 | 6060..6167 | - | 108 | Protein_8 | resolvase | - |
| C4C37_RS27705 (C4C37_27705) | 6480..6818 | - | 339 | Protein_9 | IS91 family transposase ISPsy3 | Transposase |
| C4C37_RS27710 (C4C37_27710) | 6925..7320 | + | 396 | WP_005622000.1 | CesT family type III secretion system chaperone | - |
| C4C37_RS27715 (C4C37_27715) | 7333..8175 | + | 843 | WP_080956113.1 | AvrPphF family type III effector | - |
| C4C37_RS27720 (C4C37_27720) | 8451..9608 | - | 1158 | WP_005740916.1 | putative DNA binding domain-containing protein | - |
| C4C37_RS27725 (C4C37_27725) | 9590..12256 | - | 2667 | WP_005740914.1 | hypothetical protein | - |
| C4C37_RS27730 (C4C37_27730) | 12366..12800 | - | 435 | WP_015060673.1 | hypothetical protein | Relaxase |
| C4C37_RS27735 (C4C37_27735) | 12803..13075 | - | 273 | WP_015060672.1 | hypothetical protein | - |
| C4C37_RS27740 (C4C37_27740) | 13170..13805 | - | 636 | WP_057416988.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C4C37_RS27745 (C4C37_27745) | 14108..15070 | - | 963 | WP_235774982.1 | hypothetical protein | - |
| C4C37_RS27750 (C4C37_27750) | 15418..15699 | - | 282 | WP_004666803.1 | hypothetical protein | - |
| C4C37_RS27755 (C4C37_27755) | 15699..16382 | - | 684 | WP_002556051.1 | AAA family ATPase | - |
| C4C37_RS27760 (C4C37_27760) | 16720..16977 | + | 258 | Protein_20 | TraR/DksA family transcriptional regulator | - |
| C4C37_RS27765 (C4C37_27765) | 17015..17236 | + | 222 | WP_007247505.1 | hypothetical protein | - |
| C4C37_RS27770 (C4C37_27770) | 17562..18182 | - | 621 | WP_046835450.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C4C37_RS27775 (C4C37_27775) | 18569..18889 | - | 321 | WP_015060653.1 | type II toxin-antitoxin system YafQ family toxin | - |
| C4C37_RS27780 (C4C37_27780) | 18816..19145 | - | 330 | WP_003381772.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C4C37_RS29120 | 19507..19902 | + | 396 | WP_004666990.1 | hypothetical protein | - |
| C4C37_RS27785 (C4C37_27785) | 20385..20762 | + | 378 | WP_046835400.1 | hypothetical protein | - |
| C4C37_RS27790 (C4C37_27790) | 20809..21645 | + | 837 | WP_101166150.1 | DUF932 domain-containing protein | - |
| C4C37_RS27795 (C4C37_27795) | 21713..21913 | + | 201 | WP_017684525.1 | hypothetical protein | - |
| C4C37_RS27800 (C4C37_27800) | 21980..22258 | - | 279 | WP_004661031.1 | mobilization protein | - |
| C4C37_RS27805 (C4C37_27805) | 22302..22583 | - | 282 | WP_011106972.1 | hypothetical protein | - |
| C4C37_RS27810 (C4C37_27810) | 22556..22900 | - | 345 | WP_101166164.1 | hypothetical protein | - |
| C4C37_RS27815 (C4C37_27815) | 23161..23490 | + | 330 | WP_004661027.1 | plasmid mobilization protein MobA | - |
| C4C37_RS27820 (C4C37_27820) | 23501..25456 | + | 1956 | WP_101166152.1 | Protein TraI | Relaxase |
| C4C37_RS27825 (C4C37_27825) | 25751..26611 | - | 861 | WP_225877708.1 | Transcriptional activator protein LasR | VF |
| C4C37_RS27830 (C4C37_27830) | 26651..27244 | - | 594 | WP_005734709.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| C4C37_RS27835 (C4C37_27835) | 27241..28707 | - | 1467 | WP_046835402.1 | 2-amino-4-deoxychorismate synthase | VF |
| C4C37_RS27840 (C4C37_27840) | 29336..30688 | + | 1353 | WP_046835403.1 | phenylacetate--CoA ligase family protein | - |
| C4C37_RS27845 (C4C37_27845) | 30694..31239 | + | 546 | WP_046835423.1 | hypothetical protein | - |
| C4C37_RS27850 (C4C37_27850) | 31241..31924 | + | 684 | WP_003319174.1 | iron-containing redox enzyme family protein | - |
| C4C37_RS27855 (C4C37_27855) | 31928..32545 | + | 618 | WP_017699540.1 | flavodoxin family protein | - |
| C4C37_RS27860 (C4C37_27860) | 32548..33456 | + | 909 | WP_046835404.1 | EamA family transporter | - |
| C4C37_RS27865 (C4C37_27865) | 33443..34393 | + | 951 | WP_046835405.1 | alpha/beta fold hydrolase | - |
| C4C37_RS27870 (C4C37_27870) | 34515..34772 | + | 258 | WP_057420888.1 | hypothetical protein | - |
| C4C37_RS27875 (C4C37_27875) | 35069..36364 | - | 1296 | WP_101166156.1 | glycoside hydrolase family 68 protein | - |
| C4C37_RS27880 (C4C37_27880) | 36376..36561 | - | 186 | WP_024420279.1 | Com family DNA-binding transcriptional regulator | - |
| C4C37_RS29125 | 36490..36855 | + | 366 | WP_233593890.1 | hypothetical protein | - |
| C4C37_RS27890 (C4C37_27890) | 37055..39004 | - | 1950 | WP_214551398.1 | putative signaling protein | VF |
| C4C37_RS27895 (C4C37_27895) | 39640..40341 | + | 702 | WP_046835408.1 | FadR/GntR family transcriptional regulator | - |
| C4C37_RS27900 (C4C37_27900) | 40410..41603 | + | 1194 | WP_046835409.1 | L-2-hydroxyglutarate oxidase | - |
| C4C37_RS27905 (C4C37_27905) | 41644..42690 | + | 1047 | Protein_50 | MFS transporter | - |
| C4C37_RS27910 (C4C37_27910) | 42834..43811 | - | 978 | WP_214551399.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS27915 (C4C37_27915) | 43895..44203 | + | 309 | Protein_52 | MFS transporter | - |
| C4C37_RS27920 (C4C37_27920) | 44244..44429 | + | 186 | WP_010215822.1 | hypothetical protein | - |
| C4C37_RS27925 (C4C37_27925) | 44451..44834 | - | 384 | WP_046835411.1 | helix-turn-helix transcriptional regulator | - |
| C4C37_RS27930 (C4C37_27930) | 45049..45582 | + | 534 | WP_060411657.1 | transcription termination/antitermination NusG family protein | - |
| C4C37_RS27935 (C4C37_27935) | 45671..45880 | + | 210 | WP_003344343.1 | hypothetical protein | - |
| C4C37_RS27940 (C4C37_27940) | 46173..46664 | + | 492 | WP_046835587.1 | hypothetical protein | VF |
| C4C37_RS27945 (C4C37_27945) | 46701..47174 | + | 474 | WP_005759124.1 | DotD/TraH family lipoprotein | - |
| C4C37_RS27950 (C4C37_27950) | 47171..47971 | + | 801 | WP_054071642.1 | hypothetical protein | VF |
| C4C37_RS27955 (C4C37_27955) | 47968..49149 | + | 1182 | WP_057421800.1 | Twitching mobility protein | VF |
| C4C37_RS27960 (C4C37_27960) | 49347..49931 | + | 585 | WP_046835585.1 | hypothetical protein | - |
| C4C37_RS27965 (C4C37_27965) | 49928..50479 | + | 552 | WP_050543862.1 | Phospholipase D | VF |
| C4C37_RS27970 (C4C37_27970) | 50516..50761 | + | 246 | WP_004668193.1 | hypothetical protein | - |
| C4C37_RS27975 (C4C37_27975) | 50790..51077 | + | 288 | WP_004668192.1 | IcmT/TraK family protein | - |
| C4C37_RS27980 (C4C37_27980) | 51120..55373 | + | 4254 | WP_214551394.1 | DUF5710 domain-containing protein | - |
| C4C37_RS27985 (C4C37_27985) | 55399..55752 | + | 354 | WP_019741197.1 | hypothetical protein | - |
| C4C37_RS27990 (C4C37_27990) | 55749..56456 | + | 708 | WP_046835416.1 | DotI/IcmL family type IV secretion protein | - |
| C4C37_RS27995 (C4C37_27995) | 56513..57571 | + | 1059 | WP_080956099.1 | hypothetical protein | VF |
| C4C37_RS28000 (C4C37_28000) | 57577..58935 | + | 1359 | WP_046835417.1 | conjugal transfer protein TraO | - |
| C4C37_RS28005 (C4C37_28005) | 58932..59642 | + | 711 | WP_004668187.1 | conjugal transfer protein TraP | - |
| C4C37_RS28010 (C4C37_28010) | 59651..60193 | + | 543 | WP_004661184.1 | conjugal transfer protein TraQ | - |
| C4C37_RS28015 (C4C37_28015) | 60269..60655 | + | 387 | WP_046835418.1 | hypothetical protein | VF |
| C4C37_RS28020 (C4C37_28020) | 60737..61348 | + | 612 | WP_046835419.1 | hypothetical protein | - |
| C4C37_RS28025 (C4C37_28025) | 61323..64379 | + | 3057 | WP_054068816.1 | conjugal transfer protein | - |
| C4C37_RS28030 (C4C37_28030) | 64403..64639 | + | 237 | WP_046835421.1 | hypothetical protein | - |
| C4C37_RS28035 (C4C37_28035) | 64682..65896 | + | 1215 | WP_004666881.1 | conjugal transfer protein TraW | - |
| C4C37_RS28040 (C4C37_28040) | 65886..66488 | + | 603 | WP_046835601.1 | conjugal transfer protein TraX | - |
| C4C37_RS28045 (C4C37_28045) | 66515..68659 | + | 2145 | WP_101166159.1 | DotA/TraY family protein | - |
| C4C37_RS28050 (C4C37_28050) | 68818..69795 | + | 978 | WP_007247761.1 | IS5 family transposase IS52 | Transposase |
| C4C37_RS28055 (C4C37_28055) | 69976..70221 | + | 246 | WP_004668176.1 | hypothetical protein | - |
| C4C37_RS28060 (C4C37_28060) | 70218..70862 | + | 645 | WP_019742115.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C4C37_RS28065 (C4C37_28065) | 70955..72154 | + | 1200 | WP_054068818.1 | hypothetical protein | - |
| C4C37_RS28070 (C4C37_28070) | 72240..73316 | + | 1077 | WP_101166161.1 | thioredoxin fold domain-containing protein | - |
| C4C37_RS28075 (C4C37_28075) | 73303..75591 | + | 2289 | WP_214551395.1 | F-type conjugative transfer protein TrbC | - |
| C4C37_RS28080 (C4C37_28080) | 75619..76041 | + | 423 | WP_046835576.1 | hypothetical protein | - |
| C4C37_RS28085 (C4C37_28085) | 76062..76625 | + | 564 | WP_044322441.1 | hypothetical protein | - |
| C4C37_RS28090 (C4C37_28090) | 76813..77241 | + | 429 | WP_044322440.1 | GntR family transcriptional regulator | - |
| C4C37_RS28095 (C4C37_28095) | 77320..77547 | + | 228 | WP_046835575.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|