MGE detailed information
MGE type: Mobilizable plasmid MGE length: 48758 bp
Accession: NZ_CP075667 Location: 1..48758 Organism: Escherichia coli strain STEC2018-553 Replicon: plasmid pSTEC2018_553-b
Accession: NZ_CP075667 Location: 1..48758 Organism: Escherichia coli strain STEC2018-553 Replicon: plasmid pSTEC2018_553-b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFY30_RS27885 (JFY30_27885) | 2971..3198 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| JFY30_RS27890 (JFY30_27890) | 3198..3596 | + | 399 | WP_000911313.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| JFY30_RS27895 (JFY30_27895) | 3605..5758 | - | 2154 | WP_053879280.1 | type IV conjugative transfer system coupling protein TraD | - |
| JFY30_RS27900 (JFY30_27900) | 6010..6741 | - | 732 | WP_000850423.1 | conjugal transfer complement resistance protein TraT | - |
| JFY30_RS27905 (JFY30_27905) | 6755..7264 | - | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| JFY30_RS27910 (JFY30_27910) | 7261..8229 | - | 969 | Protein_6 | conjugal transfer protein TraG | - |
| JFY30_RS27915 (JFY30_27915) | 8227..8475 | - | 249 | Protein_7 | type-F conjugative transfer system secretin TraK | - |
| JFY30_RS27920 (JFY30_27920) | 8462..9028 | - | 567 | WP_000399798.1 | type IV conjugative transfer system protein TraE | - |
| JFY30_RS27925 (JFY30_27925) | 9050..9361 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| JFY30_RS27930 (JFY30_27930) | 9376..9741 | - | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| JFY30_RS27935 (JFY30_27935) | 9775..10002 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| JFY30_RS27940 (JFY30_27940) | 10096..10782 | - | 687 | WP_198789084.1 | PAS domain-containing protein | - |
| JFY30_RS27945 (JFY30_27945) | 10972..11355 | - | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| JFY30_RS27950 (JFY30_27950) | 11678..12280 | + | 603 | WP_001368286.1 | hypothetical protein | VF |
| JFY30_RS27955 (JFY30_27955) | 12576..13397 | - | 822 | WP_001234490.1 | DUF932 domain-containing protein | - |
| JFY30_RS27960 (JFY30_27960) | 13516..13803 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| JFY30_RS27965 (JFY30_27965) | 13828..14034 | - | 207 | WP_000547940.1 | hypothetical protein | - |
| JFY30_RS27970 (JFY30_27970) | 14104..14631 | + | 528 | WP_033806434.1 | hypothetical protein | - |
| JFY30_RS27975 (JFY30_27975) | 14601..14792 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| JFY30_RS27980 (JFY30_27980) | 14789..15211 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| JFY30_RS27985 (JFY30_27985) | 15258..15683 | - | 426 | WP_001198918.1 | antirestriction protein | - |
| JFY30_RS27990 (JFY30_27990) | 16096..16872 | - | 777 | WP_001005035.1 | hypothetical protein | - |
| JFY30_RS27995 (JFY30_27995) | 16918..17472 | - | 555 | WP_077248347.1 | DUF1380 family protein | - |
| JFY30_RS28000 (JFY30_28000) | 17366..17587 | - | 222 | WP_001104870.1 | hypothetical protein | - |
| JFY30_RS28005 (JFY30_28005) | 17588..18271 | - | 684 | WP_000085939.1 | DNA methylase | - |
| JFY30_RS28010 (JFY30_28010) | 18348..18653 | - | 306 | WP_010891292.1 | hypothetical protein | - |
| JFY30_RS28015 (JFY30_28015) | 18657..19558 | - | 902 | Protein_27 | DUF1281 domain-containing protein | - |
| JFY30_RS28020 (JFY30_28020) | 20425..21396 | - | 972 | WP_000817035.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| JFY30_RS28025 (JFY30_28025) | 21396..22562 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| JFY30_RS28030 (JFY30_28030) | 23150..23905 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| JFY30_RS28035 (JFY30_28035) | 24679..25485 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| JFY30_RS28040 (JFY30_28040) | 25486..25791 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| JFY30_RS28045 (JFY30_28045) | 25793..26011 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| JFY30_RS28050 (JFY30_28050) | 26579..27091 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| JFY30_RS28055 (JFY30_28055) | 27125..28258 | - | 1134 | Protein_35 | DUF3800 domain-containing protein | - |
| JFY30_RS28060 (JFY30_28060) | 28425..29198 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| JFY30_RS28065 (JFY30_28065) | 29211..29711 | - | 501 | WP_000528932.1 | HEPN family nuclease | - |
| JFY30_RS28070 (JFY30_28070) | 29976..30206 | + | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| JFY30_RS28075 (JFY30_28075) | 30203..30619 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| JFY30_RS28080 (JFY30_28080) | 30664..32565 | - | 1902 | WP_231210559.1 | hypothetical protein | - |
| JFY30_RS28090 (JFY30_28090) | 33707..35908 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| JFY30_RS28095 (JFY30_28095) | 35934..37267 | - | 1334 | Protein_43 | L-lysine N6-monooxygenase | VF |
| JFY30_RS28100 (JFY30_28100) | 37264..39006 | - | 1743 | WP_198789090.1 | Aerobactin synthase | VF |
| JFY30_RS28105 (JFY30_28105) | 39006..39952 | - | 947 | Protein_45 | N(6)-hydroxylysine O-acetyltransferase | VF |
| JFY30_RS28110 (JFY30_28110) | 39953..41677 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| JFY30_RS28115 (JFY30_28115) | 41813..43006 | + | 1194 | WP_096849373.1 | MFS transporter | - |
| JFY30_RS28120 (JFY30_28120) | 43386..43766 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| JFY30_RS28125 (JFY30_28125) | 44107..44520 | - | 414 | Protein_49 | phosphopyruvate hydratase | - |
| JFY30_RS28130 (JFY30_28130) | 44518..44775 | + | 258 | Protein_50 | Tn3 family transposase | - |
| JFY30_RS28135 (JFY30_28135) | 45009..45866 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| JFY30_RS28140 (JFY30_28140) | 45863..46720 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| JFY30_RS28145 (JFY30_28145) | 46717..47544 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| JFY30_RS28150 (JFY30_28150) | 47544..48458 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|