MGE detailed information
MGE type: Genomic_island MGE length: 76005 bp
Accession: NZ_CP075665 Location: 4170430..4246434 Organism: Escherichia coli strain STEC2018-553 Replicon: chromosome
Accession: NZ_CP075665 Location: 4170430..4246434 Organism: Escherichia coli strain STEC2018-553 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFY30_RS20600 (4166837) | 4166837..4167556 | - | 720 | WP_000611298.1 | two-component system response regulator DcuR | - |
| JFY30_RS20605 (4167553) | 4167553..4169184 | - | 1632 | WP_001216487.1 | sensor histidine kinase | - |
| JFY30_RS20610 (4169365) | 4169365..4169595 | + | 231 | WP_000371698.1 | 4Fe-4S mono-cluster protein YjdI | - |
| JFY30_RS20615 (4169607) | 4169607..4169879 | + | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| JFY30_RS20620 (4170106) | 4170106..4170402 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | - |
| JFY30_RS20625 (4170430) | 4170430..4170603 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | - |
| JFY30_RS20630 (4170722) | 4170722..4172239 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| JFY30_RS20635 (4172476) | 4172476..4173933 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| JFY30_RS20640 (4173992) | 4173992..4176139 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| JFY30_RS20645 (4176219) | 4176219..4177553 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| JFY30_RS20650 (4177919) | 4177919..4179457 | - | 1539 | WP_001187182.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| JFY30_RS29095 (4179717) | 4179717..4179876 | - | 160 | Protein_4068 | integrase | - |
| JFY30_RS20655 (4180339) | 4180339..4180665 | - | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JFY30_RS20660 (4180662) | 4180662..4180925 | - | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| JFY30_RS20665 (4180997) | 4180997..4181863 | - | 867 | WP_000014511.1 | DUF4942 domain-containing protein | - |
| JFY30_RS20670 (4181948) | 4181948..4182145 | - | 198 | WP_000839256.1 | DUF957 domain-containing protein | - |
| JFY30_RS20675 (4182157) | 4182157..4182645 | - | 489 | WP_000761662.1 | DUF5983 family protein | - |
| JFY30_RS20680 (4182642) | 4182642..4183019 | - | 378 | WP_000854896.1 | TA system toxin CbtA family protein | Toxin Detail |
| JFY30_RS20685 (4183066) | 4183066..4183440 | - | 375 | WP_024175300.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| JFY30_RS20690 (4183603) | 4183603..4183824 | - | 222 | WP_000692358.1 | DUF987 domain-containing protein | - |
| JFY30_RS20695 (4183887) | 4183887..4184363 | - | 477 | WP_001186727.1 | RadC family protein | - |
| JFY30_RS20700 (4184379) | 4184379..4184864 | - | 486 | WP_000214386.1 | antirestriction protein | - |
| JFY30_RS20705 (4184954) | 4184954..4185772 | - | 819 | WP_001234751.1 | DUF932 domain-containing protein | - |
| JFY30_RS20710 (4185863) | 4185863..4186096 | - | 234 | WP_001117568.1 | DUF905 family protein | - |
| JFY30_RS20715 (4186167) | 4186167..4189013 | - | 2847 | WP_000820514.1 | Ag43/Cah family autotransporter adhesin | - |
| JFY30_RS20720 (4189207) | 4189207..4190435 | + | 1229 | WP_169073214.1 | IS3 family transposase IS2 | Transposase |
| JFY30_RS20725 (4190624) | 4190624..4191361 | - | 738 | WP_000634450.1 | AraC family transcriptional regulator | - |
| JFY30_RS28850 (4191584) | 4191584..4191725 | - | 142 | Protein_4084 | IS481 family transposase | - |
| JFY30_RS28855 (4192260) | 4192260..4192448 | + | 189 | WP_000520190.1 | DUF1187 family protein | - |
| JFY30_RS28860 (4192451) | 4192451..4192640 | - | 190 | Protein_4086 | IS66 family insertion sequence element accessory protein TnpB | - |
| JFY30_RS20735 (4192627) | 4192627..4192835 | - | 209 | Protein_4087 | IS66 family insertion sequence element accessory protein TnpB | - |
| JFY30_RS20740 (4193511) | 4193511..4194647 | + | 1137 | WP_001228922.1 | hypothetical protein | VF |
| JFY30_RS20745 (4194743) | 4194743..4196440 | + | 1698 | WP_000401034.1 | sulfatase | - |
| JFY30_RS20750 (4196509) | 4196509..4196766 | + | 258 | WP_001032733.1 | hypothetical protein | - |
| JFY30_RS20755 (4196987) | 4196987..4197202 | + | 216 | WP_001367551.1 | IS110 family transposase ISHar6 | Transposase |
| JFY30_RS20760 (4197376) | 4197376..4197633 | + | 258 | WP_001367505.1 | IS110 family transposase ISSde4 | Transposase |
| JFY30_RS20770 (4197948) | 4197948..4198967 | + | 1020 | WP_000878008.1 | IS110 family transposase ISEc66 | Transposase |
| JFY30_RS20775 (4199688) | 4199688..4199903 | + | 216 | Protein_4094 | integrase core domain-containing protein | - |
| JFY30_RS20780 (4200078) | 4200078..4202048 | + | 1971 | WP_096849352.1 | hypothetical protein | VF |
| JFY30_RS20785 (4202067) | 4202067..4202858 | + | 792 | WP_000977392.1 | DUF4198 domain-containing protein | - |
| JFY30_RS20790 (4203448) | 4203448..4204077 | + | 630 | WP_000021267.1 | ParB/RepB/Spo0J family partition protein | - |
| JFY30_RS20795 (4204259) | 4204259..4206004 | - | 1746 | WP_024165505.1 | nuclease-related domain-containing DEAD/DEAH box helicase | - |
| JFY30_RS20800 (4206234) | 4206234..4207454 | - | 1221 | WP_001124813.1 | DUF3440 domain-containing protein | - |
| JFY30_RS20805 (4207580) | 4207580..4207837 | - | 258 | Protein_4100 | mechanosensitive ion channel | - |
| JFY30_RS20810 (4207892) | 4207892..4208589 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| JFY30_RS20815 (4208605) | 4208605..4209186 | - | 582 | Protein_4102 | small-conductance mechanosensitive channel MscS | - |
| JFY30_RS20820 (4209348) | 4209348..4209536 | - | 189 | WP_001237806.1 | YqaE/Pmp3 family membrane protein | - |
| JFY30_RS20825 (4209555) | 4209555..4210088 | - | 534 | WP_225261556.1 | LuxR C-terminal-related transcriptional regulator | - |
| JFY30_RS20830 (4210184) | 4210184..4210660 | - | 477 | WP_001165712.1 | hypothetical protein | - |
| JFY30_RS20835 (4210723) | 4210723..4210929 | - | 207 | WP_000935977.1 | hypothetical protein | - |
| JFY30_RS20840 (4211057) | 4211057..4212259 | - | 1203 | WP_000700770.1 | hypothetical protein | VF |
| JFY30_RS20845 (4212527) | 4212527..4213867 | - | 1341 | WP_231213636.1 | hypothetical protein | VF |
| JFY30_RS20850 (4213972) | 4213972..4215200 | + | 1229 | WP_169073214.1 | IS3 family transposase IS2 | Transposase |
| JFY30_RS20855 (4215171) | 4215171..4215731 | - | 561 | WP_000522447.1 | hypothetical protein | - |
| JFY30_RS20860 (4215790) | 4215790..4217427 | - | 1638 | WP_198779643.1 | hypothetical protein | - |
| JFY30_RS20865 (4217713) | 4217713..4218960 | - | 1248 | WP_001368290.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| JFY30_RS20870 (4219020) | 4219020..4221167 | - | 2148 | WP_000835435.1 | hypothetical protein | VF |
| JFY30_RS20875 (4221172) | 4221172..4222335 | - | 1164 | WP_231201247.1 | TolC family protein | - |
| JFY30_RS28865 (4223129) | 4223129..4223386 | + | 258 | Protein_4115 | IS110 family transposase | - |
| JFY30_RS20880 (4223936) | 4223936..4224979 | + | 1044 | WP_000912969.1 | subtilase AB5 cytotoxin subunit A | - |
| JFY30_RS20885 (4224996) | 4224996..4225418 | + | 423 | WP_024166125.1 | subtilase AB5 cytotoxin subunit B | - |
| JFY30_RS20890 (4225733) | 4225733..4226719 | - | 987 | WP_001367443.1 | sialate O-acetylesterase | - |
| JFY30_RS20895 (4226820) | 4226820..4227554 | + | 735 | WP_001282578.1 | transcriptional regulator NanR | - |
| JFY30_RS20900 (4227590) | 4227590..4228513 | - | 924 | WP_001058128.1 | alpha/beta hydrolase | - |
| JFY30_RS20905 (4228575) | 4228575..4229684 | - | 1110 | WP_000865294.1 | N-acetylneuraminate epimerase | - |
| JFY30_RS20910 (4229697) | 4229697..4230407 | - | 711 | WP_001380660.1 | oligogalacturonate-specific porin KdgM family protein | - |
| JFY30_RS20915 (4230453) | 4230453..4231283 | - | 831 | WP_000948499.1 | alpha/beta hydrolase | - |
| JFY30_RS20920 (4231287) | 4231287..4232759 | - | 1473 | WP_000376548.1 | MFS transporter | - |
| JFY30_RS20925 (4232808) | 4232808..4233683 | - | 876 | WP_000629093.1 | N-acetylmannosamine kinase | - |
| JFY30_RS20930 (4233716) | 4233716..4234633 | - | 918 | WP_198789061.1 | N-acetylneuraminate lyase | - |
| JFY30_RS20935 (4234751) | 4234751..4235303 | + | 553 | Protein_4127 | transposase domain-containing protein | - |
| JFY30_RS20940 (4235579) | 4235579..4236223 | - | 645 | WP_198779606.1 | N-6 DNA methylase | - |
| JFY30_RS20945 (4236335) | 4236335..4237282 | - | 948 | WP_000005864.1 | DUF1281 domain-containing protein | - |
| JFY30_RS20950 (4237396) | 4237396..4238373 | - | 978 | WP_000850395.1 | zincin-like metallopeptidase domain-containing protein | - |
| JFY30_RS20955 (4238466) | 4238466..4238849 | - | 384 | WP_000521993.1 | hypothetical protein | - |
| JFY30_RS20960 (4238965) | 4238965..4239594 | - | 630 | WP_001293036.1 | hypothetical protein | - |
| JFY30_RS20965 (4239676) | 4239676..4240053 | - | 378 | WP_000287229.1 | hypothetical protein | - |
| JFY30_RS20970 (4240249) | 4240249..4240728 | - | 480 | WP_000555830.1 | hypothetical protein | - |
| JFY30_RS20975 (4240811) | 4240811..4241203 | - | 393 | WP_000102862.1 | hypothetical protein | - |
| JFY30_RS20980 (4241605) | 4241605..4241928 | - | 324 | WP_000340670.1 | hypothetical protein | - |
| JFY30_RS20985 (4241961) | 4241961..4242863 | - | 903 | WP_000091033.1 | integrase domain-containing protein | - |
| JFY30_RS20990 (4244177) | 4244177..4245133 | + | 957 | WP_000332798.1 | hypothetical protein | - |
| JFY30_RS20995 (4245138) | 4245138..4245713 | + | 576 | WP_000347956.1 | LysE family translocator | - |
| JFY30_RS21000 (4245862) | 4245862..4246434 | - | 573 | WP_000956341.1 | hypothetical protein | - |
| JFY30_RS21005 (4246626) | 4246626..4246801 | + | 176 | Protein_4141 | integrase core domain-containing protein | - |
| JFY30_RS21010 (4246847) | 4246847..4247110 | - | 264 | WP_000803996.1 | type B 50S ribosomal protein L31 | - |
| JFY30_RS21015 (4247300) | 4247300..4247539 | + | 240 | WP_001058544.1 | hypothetical protein | - |
| JFY30_RS21020 (4247590) | 4247590..4249086 | - | 1497 | WP_000210545.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| JFY30_RS21025 (4249093) | 4249093..4249434 | - | 342 | WP_000087137.1 | hypothetical protein | - |
| JFY30_RS21030 (4249439) | 4249439..4250836 | - | 1398 | WP_198789063.1 | integrating conjugative element protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|