MGE detailed information
MGE type: Conjugative plasmid MGE length: 76891 bp
Accession: NZ_CP075483 Location: 1..76891 Organism: Escherichia coli strain NT1N25 Replicon: plasmid pNT1N25-76kb
Accession: NZ_CP075483 Location: 1..76891 Organism: Escherichia coli strain NT1N25 Replicon: plasmid pNT1N25-76kb
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI28_RS00010 (1) | 1..858 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| IGI28_RS00015 (1797) | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| IGI28_RS00020 (2543) | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| IGI28_RS00025 (2733) | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| IGI28_RS00030 (3383) | 3383..3798 | + | 416 | Protein_4 | IS1 family transposase IS1R | Transposase |
| IGI28_RS00035 (3834) | 3834..4379 | - | 546 | Protein_5 | Tn3 family transposase TnpA_Tn3 | Transposase |
| IGI28_RS00040 (4445) | 4445..5149 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IGI28_RS00050 (5764) | 5764..6501 | - | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| IGI28_RS00055 (6627) | 6627..6722 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| IGI28_RS00060 (6857) | 6857..7561 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| IGI28_RS00065 (7683) | 7683..8588 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| IGI28_RS00070 (8585) | 8585..9823 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| IGI28_RS00075 (9823) | 9823..10407 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| IGI28_RS00080 (10900) | 10900..11628 | - | 729 | WP_021318844.1 | IS6 family transposase IS6100 | Transposase |
| IGI28_RS00085 (11693) | 11693..12397 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IGI28_RS00090 (12462) | 12462..13142 | - | 681 | Protein_15 | IS91 family transposase ISAzo26 | Transposase |
| IGI28_RS00095 (13414) | 13414..14118 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| IGI28_RS00100 (14168) | 14168..14911 | + | 744 | Protein_17 | Beta-lactamase TEM | ARG |
| IGI28_RS00105 (15170) | 15170..15646 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| IGI28_RS00110 (15693) | 15693..16568 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| IGI28_RS00115 (16990) | 16990..17694 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| IGI28_RS00120 (17760) | 17760..17825 | + | 66 | Protein_21 | IS1 family transposase | - |
| IGI28_RS00125 (19275) | 19275..19509 | + | 235 | Protein_22 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IGI28_RS00130 (19637) | 19637..19840 | + | 204 | Protein_23 | hypothetical protein | - |
| IGI28_RS00135 (20041) | 20041..20391 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| IGI28_RS00140 (20394) | 20394..21356 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| IGI28_RS00145 (21503) | 21503..21796 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| IGI28_RS00150 (21873) | 21873..22556 | + | 684 | WP_000085883.1 | DNA methylase | - |
| IGI28_RS00155 (22557) | 22557..22778 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| IGI28_RS00160 (22792) | 22792..23226 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| IGI28_RS00165 (23277) | 23277..24053 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| IGI28_RS00170 (24471) | 24471..24896 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| IGI28_RS00175 (24943) | 24943..25365 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| IGI28_RS00180 (25362) | 25362..25553 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| IGI28_RS00185 (25867) | 25867..27534 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| IGI28_RS23385 (28263) | 28263..28417 | - | 155 | Protein_35 | hypothetical protein | - |
| IGI28_RS00190 (28934) | 28934..29164 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| IGI28_RS00195 (29216) | 29216..30577 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| IGI28_RS00200 (30624) | 30624..31187 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| IGI28_RS23390 (31273) | 31273..31734 | - | 462 | Protein_39 | hypothetical protein | - |
| IGI28_RS00205 (32036) | 32036..32563 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| IGI28_RS00210 (32621) | 32621..32854 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| IGI28_RS00215 (32915) | 32915..34938 | + | 2024 | Protein_42 | ParB/RepB/Spo0J family partition protein | - |
| IGI28_RS00220 (35007) | 35007..35441 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| IGI28_RS00225 (35438) | 35438..36200 | + | 763 | Protein_44 | plasmid SOS inhibition protein A | - |
| IGI28_RS00230 (36178) | 36178..36357 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - (36169) | 36169..36393 | + | 225 | NuclAT_0 | - | - |
| - (36169) | 36169..36393 | + | 225 | NuclAT_0 | - | - |
| - (36169) | 36169..36393 | + | 225 | NuclAT_0 | - | - |
| - (36169) | 36169..36393 | + | 225 | NuclAT_0 | - | - |
| IGI28_RS23395 (36379) | 36379..36528 | + | 150 | Protein_46 | plasmid maintenance protein Mok | - |
| IGI28_RS00235 (36470) | 36470..36595 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| IGI28_RS00240 (36914) | 36914..37210 | - | 297 | Protein_48 | hypothetical protein | - |
| IGI28_RS00245 (37510) | 37510..37806 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| IGI28_RS00250 (37917) | 37917..38738 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| IGI28_RS00255 (39035) | 39035..39682 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| IGI28_RS00260 (39959) | 39959..40342 | + | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| IGI28_RS00265 (40533) | 40533..41219 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| IGI28_RS00270 (41313) | 41313..41540 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| IGI28_RS00275 (41574) | 41574..41939 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| IGI28_RS00280 (41954) | 41954..42265 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| IGI28_RS00285 (42287) | 42287..42853 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| IGI28_RS00290 (42840) | 42840..43568 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| IGI28_RS00295 (43568) | 43568..44995 | + | 1428 | WP_032297072.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| IGI28_RS00300 (44985) | 44985..45575 | + | 591 | WP_000002778.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| IGI28_RS00305 (45562) | 45562..45759 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| IGI28_RS00310 (45771) | 45771..46022 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| IGI28_RS00315 (46019) | 46019..46534 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| IGI28_RS00320 (46669) | 46669..46890 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| IGI28_RS00325 (47050) | 47050..49677 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| IGI28_RS00330 (49674) | 49674..50060 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| IGI28_RS00335 (50057) | 50057..50689 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| IGI28_RS00340 (50686) | 50686..51678 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| IGI28_RS00345 (51705) | 51705..52013 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| IGI28_RS00350 (52076) | 52076..52597 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| IGI28_RS00355 (52624) | 52624..53262 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| IGI28_RS00360 (53259) | 53259..53630 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| IGI28_RS00365 (53656) | 53656..54078 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| IGI28_RS00370 (54075) | 54075..55925 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| IGI28_RS00375 (55952) | 55952..56209 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| IGI28_RS00380 (56202) | 56202..56945 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| IGI28_RS00385 (57106) | 57106..57342 | + | 237 | WP_000270010.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| IGI28_RS00390 (57329) | 57329..57874 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| IGI28_RS00395 (57864) | 57864..58178 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| IGI28_RS00400 (58132) | 58132..58524 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| IGI28_RS00405 (58511) | 58511..59884 | + | 1374 | WP_000944325.1 | conjugal transfer pilus assembly protein TraH | - |
| IGI28_RS00410 (59881) | 59881..62697 | + | 2817 | WP_015059018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| IGI28_RS00415 (62730) | 62730..63251 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| IGI28_RS00420 (63276) | 63276..64007 | + | 732 | WP_021559024.1 | conjugal transfer complement resistance protein TraT | - |
| IGI28_RS00425 (64210) | 64210..64947 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| IGI28_RS00430 (64998) | 64998..67232 | + | 2235 | WP_032316743.1 | type IV conjugative transfer system coupling protein TraD | - |
| IGI28_RS00435 (67232) | 67232..72502 | + | 5271 | WP_061093447.1 | Multifunctional conjugation protein TraI | Relaxase |
| IGI28_RS00440 (72522) | 72522..73268 | + | 747 | WP_193115341.1 | conjugal transfer pilus acetylase TraX | - |
| IGI28_RS00445 (73323) | 73323..73883 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| IGI28_RS00450 (74015) | 74015..74215 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| IGI28_RS00455 (74601) | 74601..75200 | + | 600 | WP_032083981.1 | PIN domain-containing protein | - |
| IGI28_RS00460 (75262) | 75262..75594 | + | 333 | WP_152916585.1 | hypothetical protein | - |
| - (75795) | 75795..75854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (75795) | 75795..75854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (75795) | 75795..75854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (75795) | 75795..75854 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| IGI28_RS00465 (75899) | 75899..76048 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| IGI28_RS00470 (76332) | 76332..76580 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|